mRNA_P-littoralis_Contig6.213.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.213.1
Unique NamemRNA_P-littoralis_Contig6.213.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.213.1 vs. uniprot
Match: D7FIP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP0_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 8.620e-128
Identity = 216/361 (59.83%), Postives = 258/361 (71.47%), Query Frame = 1 
Query:    1 MDDVAANEDSPTTWSDYDARGGDEADLASLPAAVRAIVEECRAQSKQTSTATA-AEEAVPYPCRMYEEAVPGQEDMLQLQWMRVDMSSMDSERCWGQASQDEEHDCGPDSGLVLPVVYSLDPAQLLPLTLTGLPPELQRYRQGSNSSYGFDLAPEEEPEDRLFKLGKNLTEALSSDQYSRGRGEGLPPEIVAEVALLSRSDWSICLERYFDLRRCDPAMVAQVLSTAAAPTLNCLLGTVLPAVVSSISCRNSVDAESTARDTTGRSSSRKSGEEGAVGTMDIDRYSQRDIAAVHAICNLAASVAASAPRGGGRAQKEGADPVQFRDKLSRSELRKLGPLGKEAEVALAEAFFYRNTAGVSF 1080
            M D  + E+  ++WSD++ RGG EADL+SLPAAVRAIVEECRA+S         A E +PYPCRMYEE++PG+E MLQLQWMR+DMS+MDSERCWG+AS D EHDCGPDSGLVLP VYS+DPAQ+LP T+ GLPPELQR  QGSN  +    A ++ PED LFKLG+ LTEA S +     R EGLPP+++AEVA LSR+DWS+CLERY D RRCDP  +AQVL  A+ PTL+CLLGTVLP +V+ IS  ++     T+ +T G   S  SG  G           QR+ AA+ AIC LAASVAAS         +  ADPV FRDK+S SELRKLG LGKEAEVALAEAFFY   AG +F
Sbjct:    1 MADTTSQENECSSWSDFETRGGGEADLSSLPAAVRAIVEECRAKSANPPPPEQQAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGF-CQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRAEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPTAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSSET-GTKDSSASGRNGGEQAATSAGNGQRNTAALLAICRLAASVAASV--------RGDADPVAFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAAF 351
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP0_ECTSI8.620e-12859.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:846394..849006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1641
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000480.1
Cds size1083
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.213.1prot_P-littoralis_Contig6.213.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 846394..848448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791240.395388-CDS-P-littoralis_Contig6:846393..8466451680791240.395388-CDS-P-littoralis_Contig6:846393..846645Pylaiella littoralis U1_48CDSP-littoralis_Contig6 846394..846645 +
1680791240.4057465-CDS-P-littoralis_Contig6:846778..8468951680791240.4057465-CDS-P-littoralis_Contig6:846778..846895Pylaiella littoralis U1_48CDSP-littoralis_Contig6 846779..846895 +
1680791240.4163363-CDS-P-littoralis_Contig6:847108..8472101680791240.4163363-CDS-P-littoralis_Contig6:847108..847210Pylaiella littoralis U1_48CDSP-littoralis_Contig6 847109..847210 +
1680791240.434544-CDS-P-littoralis_Contig6:847523..8476901680791240.434544-CDS-P-littoralis_Contig6:847523..847690Pylaiella littoralis U1_48CDSP-littoralis_Contig6 847524..847690 +
1680791240.4486325-CDS-P-littoralis_Contig6:848003..8484481680791240.4486325-CDS-P-littoralis_Contig6:848003..848448Pylaiella littoralis U1_48CDSP-littoralis_Contig6 848004..848448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791240.4598153-UTR-P-littoralis_Contig6:848448..8490061680791240.4598153-UTR-P-littoralis_Contig6:848448..849006Pylaiella littoralis U1_48UTRP-littoralis_Contig6 848449..849006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.213.1

>prot_P-littoralis_Contig6.213.1 ID=prot_P-littoralis_Contig6.213.1|Name=mRNA_P-littoralis_Contig6.213.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=361bp
MDDVAANEDSPTTWSDYDARGGDEADLASLPAAVRAIVEECRAQSKQTST
ATAAEEAVPYPCRMYEEAVPGQEDMLQLQWMRVDMSSMDSERCWGQASQD
EEHDCGPDSGLVLPVVYSLDPAQLLPLTLTGLPPELQRYRQGSNSSYGFD
LAPEEEPEDRLFKLGKNLTEALSSDQYSRGRGEGLPPEIVAEVALLSRSD
WSICLERYFDLRRCDPAMVAQVLSTAAAPTLNCLLGTVLPAVVSSISCRN
SVDAESTARDTTGRSSSRKSGEEGAVGTMDIDRYSQRDIAAVHAICNLAA
SVAASAPRGGGRAQKEGADPVQFRDKLSRSELRKLGPLGKEAEVALAEAF
FYRNTAGVSF*
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mRNA from alignment at P-littoralis_Contig6:846394..849006+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.213.1 ID=mRNA_P-littoralis_Contig6.213.1|Name=mRNA_P-littoralis_Contig6.213.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2613bp|location=Sequence derived from alignment at P-littoralis_Contig6:846394..849006+ (Pylaiella littoralis U1_48)
ATGGACGATGTTGCCGCTAATGAGGATTCACCCACTACATGGTCAGACTA
CGACGCTCGGGGTGGGGATGAAGCAGACCTAGCGTCGCTGCCAGCTGCTG
TGAGAGCCATCGTAGAGGAGTGCAGGGCCCAGTCGAAGCAGACGTCTACT
GCTACTGCTGCGGAGGAAGCGGTGCCGTACCCATGTCGAATGTACGAGGA
GGCCGTGCCGGGGCAAGAGGACATGCTCCAGCTGCAGTGGATGCGAGTCG
ATGTGAGAGGCCCAGCTTACTCAGTATGACATACAATACAAGTATGCGGT
GGGACGTGTTCGACACCACATTCAATTCAAACCCGAAATCACGTCCGCGT
GTCCAACCGTCGTTGTCTGTGTGTTTCGCAAGCAGATGTCGAGCATGGAC
AGCGAACGCTGCTGGGGACAGGCTTCCCAGGACGAGGAGCACGATTGCGG
CCCAGATTCTGGCCTGGTACTGCCCGTGGTGTACAGCTTGGACCCTGCTC
AGGTGAATGTGAGCATACGAAGACCAAGAGGGCTCGCAGGTTATCGCATT
TCGTCGTGATTGCTTCAAAATAAAGCCAGCTATTTCGGTGGGAACTGCCC
ATCATACCTTCCACGATACCCACAGCAGTACCCGCTTGTAGACTGCTGTT
GTACCGTGCCTGCTAGCTTCTGATCGTCATGTGTCTTGACTGCCACATCT
CTTTCGGCCACGCAGCTTCTGCCGTTGACGCTCACTGGACTACCGCCAGA
GCTCCAGCGTTATCGGCAAGGCAGCAACAGCAGCTATGGATTTGATCTGG
CTCCGGAGGAAGAGCCGGTAAGGGATGGACTTGTCATCATTGTTGTTGTT
GTTGGTGTTGGTGGTGGTGGTGGTGGTGTTGGTATTGTTGTTGTTGTTGT
TGGTGGTGGTGGTGGTGATGTGTCTTGTTGTTTCACTGTTGGAACCTTCT
CCATTGAGGGAATTTTCACTGCGTGGGCACAGGTTCTGTGTCGCGTTCTC
GTACTCGAGACCCGCTGAGTTTACGTAAATATACCCGTCAGAACCTAAAT
GACTGCGTTACTCTCGTGGGCATTCTTTCGCCAATAGTCTCAAGGATTTT
TTGTTTTGCTTCTGGAAATTCTCATCACAGGAAGATCGCCTTTTCAAGCT
CGGCAAAAACCTAACGGAGGCGCTTTCCAGCGACCAGTACAGCCGTGGGC
GAGGGGAGGGCCTACCCCCAGAGATCGTCGCAGAAGTTGCGTTGTTATCG
CGCTCGGATTGGTCTATCTGCCTCGAACGATACTTTGACTTGCGGAGGTG
AGCGAACGGCATACTTCCTTGTTTTCCGCGCTGCATACTTTTGACTCATC
CATTTATCTCGTGCGATACACACAGCCTGATTGCGAAGCAAGTCCCAGTT
AGTTAACAGTTGCTTCTTCCCGTGGATACGGTGCTCTTGATACCGAGGCA
ACTGCTATCAGCAAGTGGTCAATGCAGTCAAAACATCGACGGCCTACATT
TTATACGAAAACGAGGAAATTACATTGCGCCGACCGACCCAAGTGTCCCC
TTTAGCTGCATTACACCCTGTAGCCCCCCCCCCCCGCCCCGCCCCACCGA
CGAACAATAGGTGCGACCCTGCGATGGTTGCACAAGTACTCTCCACCGCA
GCCGCCCCGACCCTCAACTGCCTCCTGGGCACGGTGCTGCCGGCGGTTGT
ATCCAGCATCTCGTGCCGTAACTCCGTCGATGCTGAATCCACCGCCCGGG
ATACGACAGGACGCAGCAGCAGTCGGAAGAGTGGAGAAGAGGGTGCCGTA
GGAACGATGGATATCGATAGATATAGCCAGAGAGACATTGCGGCCGTCCA
CGCGATCTGTAACTTGGCGGCCTCAGTTGCAGCCTCTGCTCCGAGGGGAG
GAGGGCGAGCACAGAAGGAAGGAGCAGATCCCGTGCAGTTTCGAGACAAG
TTGTCCAGGAGCGAGCTTCGGAAGCTGGGTCCGCTTGGAAAGGAGGCGGA
AGTGGCGCTTGCAGAGGCGTTTTTTTACAGGAATACGGCGGGAGTATCGT
TTTGATTAGCCCGTTTCAGCTTGCCTTGTGCAAGGTTGCTATATCCTTCA
TTGTGCTTTGATTTGATTCCACCACGTTTCCATGTCGAGAAAGAAAAATT
GTCTGAATGGCACGAATGCTGGTTTAGCCGTCGCGCTTGTCCTGAAGGAG
CAGTCGTGTAGTCCGTGTGTGAAGGGGTTGTTTACCATGCTTTCCTTCCG
AAGTGGCGGACACGCCATTATCGAAGCTATGCGGCGGAATTTCGTCCACG
ACTGTGAATTACTTGGTTTTTGATCTGTTATTTAGAGGTAGCTGCGGGTC
GTCGCTGACCGGCTTGTCGCAGTCATCGTTGTGCTTGGCTTTTCAGAAAA
CCGCCGCTGCTGCTACAGTAAAAAGTATCAATCAAACCGAACCTAGGCGA
GGCCGCCTGATGTCACGACATGTGATGAGCATACGTGCTGTTGGCGGGGT
CGCGGAGTGGCCCGGGGAGAGCGAAACAAGCGATAATCGAAAACCGCTGA
AGCTGCTGCTGATGAAACAACTACGACAGTCCCGTAGGTTTGCCGCAGGC
CTTCAGTCTACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:846394..849006+

>mRNA_P-littoralis_Contig6.213.1 ID=mRNA_P-littoralis_Contig6.213.1|Name=mRNA_P-littoralis_Contig6.213.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1083bp|location=Sequence derived from alignment at P-littoralis_Contig6:846394..849006+ (Pylaiella littoralis U1_48)
ATGGACGATGTTGCCGCTAATGAGGATTCACCCACTACATGGTCAGACTA
CGACGCTCGGGGTGGGGATGAAGCAGACCTAGCGTCGCTGCCAGCTGCTG
TGAGAGCCATCGTAGAGGAGTGCAGGGCCCAGTCGAAGCAGACGTCTACT
GCTACTGCTGCGGAGGAAGCGGTGCCGTACCCATGTCGAATGTACGAGGA
GGCCGTGCCGGGGCAAGAGGACATGCTCCAGCTGCAGTGGATGCGAGTCG
ATATGTCGAGCATGGACAGCGAACGCTGCTGGGGACAGGCTTCCCAGGAC
GAGGAGCACGATTGCGGCCCAGATTCTGGCCTGGTACTGCCCGTGGTGTA
CAGCTTGGACCCTGCTCAGCTTCTGCCGTTGACGCTCACTGGACTACCGC
CAGAGCTCCAGCGTTATCGGCAAGGCAGCAACAGCAGCTATGGATTTGAT
CTGGCTCCGGAGGAAGAGCCGGAAGATCGCCTTTTCAAGCTCGGCAAAAA
CCTAACGGAGGCGCTTTCCAGCGACCAGTACAGCCGTGGGCGAGGGGAGG
GCCTACCCCCAGAGATCGTCGCAGAAGTTGCGTTGTTATCGCGCTCGGAT
TGGTCTATCTGCCTCGAACGATACTTTGACTTGCGGAGGTGCGACCCTGC
GATGGTTGCACAAGTACTCTCCACCGCAGCCGCCCCGACCCTCAACTGCC
TCCTGGGCACGGTGCTGCCGGCGGTTGTATCCAGCATCTCGTGCCGTAAC
TCCGTCGATGCTGAATCCACCGCCCGGGATACGACAGGACGCAGCAGCAG
TCGGAAGAGTGGAGAAGAGGGTGCCGTAGGAACGATGGATATCGATAGAT
ATAGCCAGAGAGACATTGCGGCCGTCCACGCGATCTGTAACTTGGCGGCC
TCAGTTGCAGCCTCTGCTCCGAGGGGAGGAGGGCGAGCACAGAAGGAAGG
AGCAGATCCCGTGCAGTTTCGAGACAAGTTGTCCAGGAGCGAGCTTCGGA
AGCTGGGTCCGCTTGGAAAGGAGGCGGAAGTGGCGCTTGCAGAGGCGTTT
TTTTACAGGAATACGGCGGGAGTATCGTTTTGA
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