mRNA_P-littoralis_Contig6.207.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.207.1
Unique NamemRNA_P-littoralis_Contig6.207.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.207.1 vs. uniprot
Match: D7FIP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP3_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 4.200e-87
Identity = 150/188 (79.79%), Postives = 162/188 (86.17%), Query Frame = 3 
Query:  240 AAHASSSLSPGVCGGYLDRGLPH---GSRGGAPTSVVMLLADDGT-TSADGRADVGQLVSELNKADRADTLLNSMIKINEVVDADEDGVLENPFATESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVLVAPALIIVLAS 791
            AA  SSSL  G   G   RG+ H   G RG +P +V+M+LAD+G  +SADGRADV QLV EL KADR DTLLNSM+KIN+VVD DEDGVLENPFA ESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAV VAPALI++LA+
Sbjct:   99 AAILSSSLPAGAASG--SRGVRHHLDGGRGSSPANVLMVLADEGDFSSADGRADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 284
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BLAST of mRNA_P-littoralis_Contig6.207.1 vs. uniprot
Match: A0A836CGK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.410e-34
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  372 ADGRADVGQLVSELNKADRADTLLNSMIKINEVVDADEDGVLENPFATESIVKGLIDKRRAG---GEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVLVAPALIIVLAS 791
            A   AD+   ++EL++A  AD  L +M+K+NE++D+D DG +ENP A E +V+GL  K+R     GE W  + + A+G+L+R+LDP+N   LRPYL +APFLGG YYLA FFVQQKF   FP AYF  V V VAP L +++ S
Sbjct:    5 ASAEADMDGALAELSRAKDADQTLTAMVKVNEILDSD-DGTMENPLAREIVVRGLSAKKREARTTGE-WRDDIDFAYGVLRRRLDPYNTFALRPYLGVAPFLGGLYYLAAFFVQQKFPEAFPLAYFSLVGVFVAPILFLLVNS 145
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BLAST of mRNA_P-littoralis_Contig6.207.1 vs. uniprot
Match: A0A7S2XUD1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.130e-16
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 3 
Query:  390 VGQLVSELNKADRADTLLNSMIKINEVVDADEDGVLENPFATESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVLVAPALIIVL 785
            V + +  L  ++    + N++  I  ++  DEDG L      + +V+ + +K+ +    W +  E  F ++KRKLDP+N V+L PYLK+APF+GGA YLA+ +VQQ     F YAY        AP  II L
Sbjct:  123 VSEAIEALKSSEGPRQISNALEGIYNLIQ-DEDGPLVETADKKLVVQKVREKKASSQAVWTAENEIEFSVIKRKLDPYNTVVLGPYLKVAPFVGGAIYLALIWVQQSLPRVFDYAYIVGALAFAAPIFIIAL 253
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BLAST of mRNA_P-littoralis_Contig6.207.1 vs. uniprot
Match: A0A6T5PVA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PVA6_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 2.290e-16
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 3 
Query:  390 VGQLVSELNKADR-ADTLLNSMIKINEVVDADEDGVLENPFATESIVKGLIDKR-RAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRG-FFPYAYFGAVAVLVAPALIIVLAS 791
            V Q+V+++    +  D+++    ++N +  AD+D VL +P   + +V+ LI+K+     E WD      +GILKRKLDP+N V L  YL +AP+LGG  YLA+  VQ+   G  F  AY        APA+++ LAS
Sbjct:   95 VSQIVTDIKTQQKDTDSIIGLFAEVNRM--ADDDEVLIDPKDRKEVVRALIEKKANQADEKWDEQVYNGYGILKRKLDPYNTVALGGYLSVAPYLGGLLYLALVAVQRALPGRAFDVAYVVGALAFFAPAVLLALAS 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIP3_ECTSI4.200e-8779.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGK9_9STRA1.410e-3450.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XUD1_9STRA1.130e-1636.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5PVA6_HETAK2.290e-1637.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:833593..837023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIP3
Model size1729
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.95e-91
EggNOG OGs2D01M@1|root,2SCF0@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000520.1
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791240.1181583-UTR-P-littoralis_Contig6:833592..8345271680791240.1181583-UTR-P-littoralis_Contig6:833592..834527Pylaiella littoralis U1_48UTRP-littoralis_Contig6 833593..834527 -
1680791240.1658576-UTR-P-littoralis_Contig6:836967..8370231680791240.1658576-UTR-P-littoralis_Contig6:836967..837023Pylaiella littoralis U1_48UTRP-littoralis_Contig6 836968..837023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791240.1318092-CDS-P-littoralis_Contig6:834527..8347371680791240.1318092-CDS-P-littoralis_Contig6:834527..834737Pylaiella littoralis U1_48CDSP-littoralis_Contig6 834528..834737 -
1680791240.1432002-CDS-P-littoralis_Contig6:835550..8356161680791240.1432002-CDS-P-littoralis_Contig6:835550..835616Pylaiella littoralis U1_48CDSP-littoralis_Contig6 835551..835616 -
1680791240.1531184-CDS-P-littoralis_Contig6:836505..8369671680791240.1531184-CDS-P-littoralis_Contig6:836505..836967Pylaiella littoralis U1_48CDSP-littoralis_Contig6 836506..836967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.207.1prot_P-littoralis_Contig6.207.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 834528..836967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.207.1

>prot_P-littoralis_Contig6.207.1 ID=prot_P-littoralis_Contig6.207.1|Name=mRNA_P-littoralis_Contig6.207.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MIMTTTSDKNNNDNHHHNDDDDTQTTKNAASSAAPAWAAASRTAVACLAT
AAILSSSLSTAAAHASSSLSPGVCGGYLDRGLPHGSRGGAPTSVVMLLAD
DGTTSADGRADVGQLVSELNKADRADTLLNSMIKINEVVDADEDGVLENP
FATESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKI
APFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVLVAPALIIVLAS*
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mRNA from alignment at P-littoralis_Contig6:833593..837023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.207.1 ID=mRNA_P-littoralis_Contig6.207.1|Name=mRNA_P-littoralis_Contig6.207.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3431bp|location=Sequence derived from alignment at P-littoralis_Contig6:833593..837023- (Pylaiella littoralis U1_48)
GCAGTGGCAGCAATAGCCGGTTGGCGGCCTCCCCCTGCCGATCACTTCCT
CCCAGCATGATCATGACCACCACAAGCGATAAGAACAACAATGACAACCA
TCACCACAACGACGACGACGACACACAGACCACGAAAAACGCGGCTTCGT
CGGCGGCTCCAGCCTGGGCAGCGGCCTCTCGAACCGCGGTCGCCTGCCTG
GCCACCGCCGCCATCCTGTCCTCCTCCTTGTCAACAGCCGCCGCGCACGC
TTCGTCGTCATTATCGCCGGGAGTCTGTGGTGGCTACTTAGATAGGGGAT
TGCCGCACGGGAGCAGGGGGGGCGCGCCGACCAGTGTGGTGATGCTGTTG
GCCGACGATGGGACTACGTCGGCCGACGGCAGGGCGGACGTGGGTCAGCT
GGTGTCGGAGCTCAACAAGGCCGACAGGGCGGACACGCTGCTGAACTCGA
TGATCAAGATCAATGAAGTGGTGGATGCGGATGAGGACGGGGTGCTGGAG
AACCCCTTCGCGACTGAGGTGCGGTGCGGTGCGGCGGTGCTGCTGTCGTG
GTGTCGCCTATTGAAATTTTGCCTGCGTTCATTCAGCAGGACCGCTGTGT
GGTGCTGCTGCTGTGTGAGCTTGGCTTGGGTTGGCTCACCTTATCCAACA
TACGAAGTTGTTTGTACTTAGGAGGCGCACAGCACGTCTGTACTTGGGGT
TAGCGATCGCTCACGACTCCAAGGTAAGAGAAGGCCGGTAAAGGCATACC
ACTGCAGTCCAGCGACACCAAGAAACATCCTGGTAACATTTTCAGATTGT
CCAAGGCAGCACTTGCTTATGCTTCCTGTTGCTGAAAAAATCCGGACTGC
AGATACAACATTATAATCGGCCTGTACCCTAACAATCCAAACAGCAAACC
ATTCTAGAGGTCCGTTAATTTTTGCCGCCGGATGGACGTCTTGAAAACTT
GGTAATAATATGCCCCCCCCCCCCTCCCGACTACTGTGCCTCAACCATAT
GTATTCGTTGAAACCTGGAGTGGATTTCTGTTTCCTGTTTTTTCAAAAGG
CGATTCCCCGCAGCTATCTTAAATTTTCCCTCGAACACCTTTCCGGCTAT
TTAGGCAGAGAGGGGGAAAGGACTAGCTGAACGGGAAATGTGTATCGGTC
TGTCATCCTCAGTTTGATACAAGAGTCGTGTGTCGATAGCAGCGCGGCGT
GCCTGATGGTGCGATTCGCGCTTGATCGCTCTCTCTCTCTCTCTGTGCGC
TTGAAGGATCGTCGCGCTTTTGGGTGCTGCCTAAGCTAGCTTTCCGAGTC
TCTTCCGTTATGTGTTTTCCGCTGATGTCCATCCAAGGCCGACCAACGAG
ACGTCTTGCTGTTTTTCGCGCCGTCTTTGTCGTCCGTCTCGTGCTGCATG
TACACAGAGCATTGTCAAAGGGCTGATTGACAAGCGGAGGGCTGGGGGAG
AAGCCTGGGATAGCAACACAGAGGTGTGTGTGTGCGTGTGTGTTCTCGTG
CGTACGTGCATGCGTGTGTGATGTTCGTGTGCTGTGTTGGTTTGTGTGTA
CATCGAGTGAGAAAAGCGGTGAAAGAGAGATCGAGAGAGAGAGATCACAC
GATCCGGATCACACCGCGGCACTACAGTTTAATGGAATTCAACTTGTTGA
TGAGGTACATAAGTGGAGAATGAAACAGTTAAGCACAGTTCTTTTAGACA
AGCACACACTGCAGCGATTCCGGAGAAGCGCTGACGCAAGCGCTCTTCGT
GTTGGGCTGTCATGGTCCCACCGACAGTAACCGCTCGAAATGCCGTACTT
GCAGTTGTGCGTCGACCCGTGGCTGAAAACACTGGCTGACGCCGCGCCAA
GGAGAGATCAGTTCTGCGCCAGGAACAACCGACCATCATCATGGGTGTCT
GTACAAGCATGCCCGGGTTCCCTTGTGTCCGGGTATAACCAGGCCGAACG
GAGGCCCCACTCACGATCTGTCTACTGCTGTTCACCATCCAAGCAACCGC
AGCCGGCCACCCCACCCAGCCACCGCTCCAAGCGGACCTACCCCAACCAA
CCGAGGAGCACGGGAATGGTCAATTTTGATTTTCCTAATATTTTCCATCT
TGCCTTTTTTTTGCACCTCATCGAATTTTCGAAGCACACAGGATCACTCA
CCCACCCACCTACCCACGCACCCAATCTTGCTCACCCACGAACCGATAAA
CTTGACTCACAATCAATCCCCCTTGGGTCCGCCTCAATCTCTGTGCCCTC
GACGCTCGAAACGAAAAAACATCAAACTTGGACAAGACCGCCTTCGGCAT
CTTGAAGCGAAAGCTGGACCCGTTCAACGTGGTTCTCCTGCGGCCGTACC
TGAAGATCGCGCCCTTCTTGGGGGGCGCGTACTACCTTGCGGTGTTCTTC
GTGCAGCAGAAGTTCAGAGGCTTCTTCCCGTACGCGTACTTCGGGGCGGT
GGCCGTCCTCGTGGCCCCGGCACTAATTATTGTCCTGGCAAGTTGATGGA
TCGTTTTTCAATCAGGGAAATAAACTAAAGAGTGACCGTGTGTACTGCAG
GGAAGCTGGCTTGGTGTCGTTGATGCACCAAAAAGGCGGGTCACTGAACA
AAAAAAATGACGTCGAACGAGCAATTGCTCTAGATTGGCCTGGCCTGGTA
CAAAAGCCGAAGAAGGATTTTCACATCATTTTTCACTCCTTGTCAAGAAA
ATTTTACGGTCACAAACTCGATTTTCCTATTCGGACGACACGACGTTCGG
GCAACATTTGTTATGCTTTTAAGTTGAGTTGTTTCCTTGGGGTCGAACCG
GGTGTCGTGTGTGGTCTGTCTTTCCGTATCGATCGGATCAGCTAAAGAGC
GAGAGATCGAAGAGAGGCTAGCTTCATTGCAAGGCTGTTATCCGTACAGC
AGGGCGGGAGCTGAGTGCATTTCGTGCATAATGGGACAAAACGTCCACCC
GTTCTTCTGTCGGTTACCGCAGACTACAGCAGCAGTCTAGTTTTGTGCTC
TGACGATATGTCACCCAGGTGGGTGCGATGAGACAGCCTCTACTGTGCAG
CAGTCGGCAGGGCAACGTGTCGCGGAGAATGGAATTTCTTGCTTGAGAAC
GCGAAGAACGCGCACACATGGAGCGGGCAGATAAGGGGGGTCGGCTGGCT
TCTTTCACGGACCATACGCGAGGAAACAGGCATCACAGAGATCCTGGGAG
TGCCGACTCTCCTTCGGTTACGATAAGAAGGGGTTGCCTTTTTTCCTTCA
TCAAAAAGGTGTATCGTACTACCGTACAGGAACAATTATTGAGCAAAATT
GCAACGCAAGCTACATGAGTTACATGCTTTCGAGATTCGCGCACCCCAAG
TGCCGAATGAAATCTTAATCTTCCGAAAAAAGAGTGTCCGCGTTAGAAAA
ATCACACTTTGGATAAAATAAAATGCCATCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:833593..837023-

>mRNA_P-littoralis_Contig6.207.1 ID=mRNA_P-littoralis_Contig6.207.1|Name=mRNA_P-littoralis_Contig6.207.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig6:833593..837023- (Pylaiella littoralis U1_48)
ATGATCATGACCACCACAAGCGATAAGAACAACAATGACAACCATCACCA
CAACGACGACGACGACACACAGACCACGAAAAACGCGGCTTCGTCGGCGG
CTCCAGCCTGGGCAGCGGCCTCTCGAACCGCGGTCGCCTGCCTGGCCACC
GCCGCCATCCTGTCCTCCTCCTTGTCAACAGCCGCCGCGCACGCTTCGTC
GTCATTATCGCCGGGAGTCTGTGGTGGCTACTTAGATAGGGGATTGCCGC
ACGGGAGCAGGGGGGGCGCGCCGACCAGTGTGGTGATGCTGTTGGCCGAC
GATGGGACTACGTCGGCCGACGGCAGGGCGGACGTGGGTCAGCTGGTGTC
GGAGCTCAACAAGGCCGACAGGGCGGACACGCTGCTGAACTCGATGATCA
AGATCAATGAAGTGGTGGATGCGGATGAGGACGGGGTGCTGGAGAACCCC
TTCGCGACTGAGAGCATTGTCAAAGGGCTGATTGACAAGCGGAGGGCTGG
GGGAGAAGCCTGGGATAGCAACACAGAGACCGCCTTCGGCATCTTGAAGC
GAAAGCTGGACCCGTTCAACGTGGTTCTCCTGCGGCCGTACCTGAAGATC
GCGCCCTTCTTGGGGGGCGCGTACTACCTTGCGGTGTTCTTCGTGCAGCA
GAAGTTCAGAGGCTTCTTCCCGTACGCGTACTTCGGGGCGGTGGCCGTCC
TCGTGGCCCCGGCACTAATTATTGTCCTGGCAAGTTGA
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