mRNA_P-littoralis_Contig6.135.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.135.1
Unique NamemRNA_P-littoralis_Contig6.135.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: D8LN10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN10_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 4.330e-97
Identity = 154/185 (83.24%), Postives = 170/185 (91.89%), Query Frame = 3 
Query:  540 GGRRGPLPKKRPLVYLGEAVNDAILEMCVVNKGRPLARSMTDFVEYSIEALASGYSVEALLLELQLLDSITRVPGETLTGVEKRYRTQWITALHAVMQNLKYMEEQEPRTAEEFHIKSQVDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQKLEDAAAA 1094
            GG  GP PKKRPLV+L +A+NDAILEMCV NKGRPLA+SMTDFVE+S+E LASGYS E LLLELQLLDS TRVPG+TLTGVEKRYRTQWI+AL  VMQNLK+++EQEP++ EEFHIKSQVDVV+RGRQTNDEQTFVKFDKALATGGVAGGVATECI ISPQ+VPLSQL+LL IRALQKLEDAA A
Sbjct:   12 GGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 196
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: A0A6H5KRS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS9_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 7.790e-93
Identity = 156/199 (78.39%), Postives = 174/199 (87.44%), Query Frame = 3 
Query:  504 RMDATAAGDQGGGGRRGPLPKKRPLVYLGEAVNDAILEMCVVNKGRPLARSMTDFVEYSIEALASGYSVEALLLELQLLDSITRVPGETLTGVEKRYRTQWITALHAVMQNLKYMEEQEPRTAEEFHIKSQ--VDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQKLEDAAAA 1094
            RM A +  ++  G   GP PKKRPLV+L +A+NDAILEMCV NKGRPLA+SMTDFVE S+E LASGYS E LLLELQLLDS TRVPG+TLTGVEKRYRTQWI+AL  VMQNLK+++EQEP++ EEFHIKSQ  VDVV+RGRQTNDEQTFVKFDKALATGGVAGGVATECI ISPQ+VPLSQL+LL IRALQKLEDAA A
Sbjct:  114 RMGAGSGDERYQGAPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVELSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 312
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: A0A1Y1HTH8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTH8_KLENI)

HSP 1 Score: 111 bits (278), Expect = 3.700e-24
Identity = 78/228 (34.21%), Postives = 124/228 (54.39%), Query Frame = 3 
Query:  432 RCVFRRSSNGCGRIQRVVHNSCWSR------MDATAAGDQGGGGRRGPLPKKRPLVYLGEAVNDAILEMCVVNKGRPLARSMTDFVEYSIEALASGYSVEALLLELQLLDS----ITR-VPGETLTGVEKRYRTQWITALHAVMQNLKYMEE---QEPRTAEEFHIKSQVDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQK 1073
            RC ++ + +   ++Q      CW R      +   AA D    G        R L  + + +  A  E+CV N GRP A ++ DFV  ++EA   G S + + ++LQ        I R V G  LTG E+RYR+QW+  ++  +Q LK   E   Q+P T +E  I + +  VL G++T +EQ+ VKFD+AL+T G +GG  +E  V++PQ +P++QL+LL ++ L +
Sbjct:   23 RCSWQEAGSNPCQLQERQGALCWLRKLRRHSVCCRAASD----GTNSQPQGCRSLDDVCQDIEKAFSEVCVENLGRPAAAALFDFVAATVEAYMLGASRDKVTIQLQYGSKEAYRIERDVAGYRLTGSEERYRSQWLDVIYTTLQLLKQGSEEWRQQPATQDESLI-AIIHRVLEGQRTGEEQSLVKFDRALSTAGASGGATSERRVVAPQWIPVTQLVLLTMKVLNE 245
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: A0A388LBA0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LBA0_CHABU)

HSP 1 Score: 108 bits (271), Expect = 1.340e-22
Identity = 67/179 (37.43%), Postives = 105/179 (58.66%), Query Frame = 3 
Query:  570 RPLVYLGEAVNDAILEMCVVNKGRPLARSMTDFVEYSIEALASGYSVEALLLELQL----LDSI-TRVPGETLTGVEKRYRTQWITALHAVMQNLKYMEEQE----PRTAEEFHIKSQVDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQKLE 1079
            R L  L   V  A  E+CV N GRP   ++ DF   + EA   G++ + L LEL+     +D    +  G  LT  E+RYR+QWI  ++  +  +K +E +E    P   +E+ +++ V  VL G++T +EQT VKFD+ALAT G +GG A +  VI+PQ VP+SQ++LL ++ + + +
Sbjct:  134 RSLPQLCRLVERAFFEVCVQNLGRPAGMALYDFTVATSEAFFKGFTRDQLALELRFGSHHMDGYGVQAAGYRLTSSEERYRSQWIDTIYVTLHMMKVVEPEEASNTPDMGDEW-LRNIVHRVLEGQRTGEEQTAVKFDRALATAGASGGAAAQKKVIAPQWVPVSQIVLLTMKVVAEAQ 311
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: A0A2R6W5D4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W5D4_MARPO)

HSP 1 Score: 103 bits (258), Expect = 2.710e-21
Identity = 59/179 (32.96%), Postives = 102/179 (56.98%), Query Frame = 3 
Query:  567 KRPLVYLGEAVNDAILEMCVVNKGRPLARSMTDFVEYSIEALASGYSVEALLLELQLLD-----SITRVPGETLTGVEKRYRTQWITALHAVMQNLKYMEEQEPRTA-----EEFHIKSQVDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQK 1073
            K  L  +   +     E+CV N+GRP   ++ +FV  ++ A  +G++ + L L+L   D     S     G  LT  E++YR+QW+  ++  +Q LK ++ Q  R++      + H+ S V  V+ G+Q+ DEQ+FVKFD+ LAT G +GG   +   ++PQ +PL+QL+LL ++ + +
Sbjct:   82 KPSLADICRCLQHCFFEICVENRGRPAGTALHEFVGAAVAAYLAGHTRDRLSLQLAYGDNGMEESKLETEGFRLTASEEQYRSQWLDTIYTTLQFLKVVDNQASRSSLVTAQTDSHLFSIVRRVVEGQQSGDEQSFVKFDRGLATKGASGGAIAQREAVAPQFIPLTQLVLLTMKVVNE 260
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: A0A0G4F2M6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2M6_VITBC)

HSP 1 Score: 94.7 bits (234), Expect = 1.860e-18
Identity = 62/163 (38.04%), Postives = 95/163 (58.28%), Query Frame = 3 
Query:  615 EMCVVNKGRPLARSMTDFVEYSIEA-LASGYSVEALLLELQLLDSI--TRVPGETLTGVEKRYRTQWITALHAVMQNLKYM------EEQEPRT-AEEFHIKSQVDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQK 1073
            E C+ N+GR LA ++ DFVE  ++  +  G S   L LE Q+   I   R P E LT  +K  R +WI  +   ++ L  +      E + P T A +  ++  V   ++G+QT D Q++V FD++LAT G  GGVATE + + PQV+PLSQL+LL ++A+ +
Sbjct:   55 EACLHNRGRSLAEALGDFVEECVDVFIYGGCSPVQLQLETQVEGEIHCERNPLERLTQDDKEARARWIRCVWLTLRTLGVVSVRRDSEVEGPSTSAADAALQGLVSTTVKGQQTGDRQSYVPFDRSLATRGNQGGVATENVAVPPQVIPLSQLVLLTMKAVNE 217
[Close]
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Match: A0A2K1KSW5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSW5_PHYPA)

HSP 1 Score: 91.3 bits (225), Expect = 8.040e-17
Identity = 52/153 (33.99%), Postives = 89/153 (58.17%), Query Frame = 3 
Query:  615 EMCVVNKGRPLARSMTDFVEYSIEALASGYSVEALLLELQ-----LLDSITRVPGETLTGVEKRYRTQWITALHAVMQNLKYMEEQEPRT--AEEFHIKSQVDVVLRGRQTNDEQTFVKFDKALATGGVAGGVATECIVISPQVVPLSQLILL 1052
            E+CV N GR   +++ +FV  +++A  +GY+ + L L++      + +      G  LT  E+ YRTQW+T ++  +Q LK  + +   +   E   +   +   L G++  +EQ+ VKFD+ LAT G +GG  +E +VISPQ VP++Q++LL
Sbjct:  113 EICVQNLGRSAGQALHEFVCAAVDAFMAGYTFDRLNLQIVHGSGGMEEFKMENAGYRLTASEEYYRTQWLTTIYVTLQMLKVADNEASASFVTENLQLVQIIHRTLEGQRHGEEQSLVKFDRGLATKGASGGAVSEKLVISPQWVPVTQIVLL 265
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LN10_ECTSI4.330e-9783.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRS9_9PHAE7.790e-9378.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HTH8_KLENI3.700e-2434.21Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A388LBA0_CHABU1.340e-2237.43Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2R6W5D4_MARPO2.710e-2132.96Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0G4F2M6_VITBC1.860e-1838.04Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2K1KSW5_PHYPA8.040e-1733.99Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:516108..519484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LN10
Model size1654
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.31e-100
EggNOG OGs2EQ6P@1|root,2ST8S@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000950.1
Cds size900
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.135.1prot_P-littoralis_Contig6.135.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 516665..519287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791236.8087504-UTR-P-littoralis_Contig6:516107..5166641680791236.8087504-UTR-P-littoralis_Contig6:516107..516664Pylaiella littoralis U1_48UTRP-littoralis_Contig6 516108..516664 -
1680791236.8763106-UTR-P-littoralis_Contig6:519287..5194841680791236.8763106-UTR-P-littoralis_Contig6:519287..519484Pylaiella littoralis U1_48UTRP-littoralis_Contig6 519288..519484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791236.8214476-CDS-P-littoralis_Contig6:516664..5167621680791236.8214476-CDS-P-littoralis_Contig6:516664..516762Pylaiella littoralis U1_48CDSP-littoralis_Contig6 516665..516762 -
1680791236.83299-CDS-P-littoralis_Contig6:517281..5173841680791236.83299-CDS-P-littoralis_Contig6:517281..517384Pylaiella littoralis U1_48CDSP-littoralis_Contig6 517282..517384 -
1680791236.8453875-CDS-P-littoralis_Contig6:517574..5176341680791236.8453875-CDS-P-littoralis_Contig6:517574..517634Pylaiella littoralis U1_48CDSP-littoralis_Contig6 517575..517634 -
1680791236.8552015-CDS-P-littoralis_Contig6:517814..5179511680791236.8552015-CDS-P-littoralis_Contig6:517814..517951Pylaiella littoralis U1_48CDSP-littoralis_Contig6 517815..517951 -
1680791236.8650832-CDS-P-littoralis_Contig6:518785..5192871680791236.8650832-CDS-P-littoralis_Contig6:518785..519287Pylaiella littoralis U1_48CDSP-littoralis_Contig6 518786..519287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.135.1

>prot_P-littoralis_Contig6.135.1 ID=prot_P-littoralis_Contig6.135.1|Name=mRNA_P-littoralis_Contig6.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=300bp
MMPCGLTRSCRNLLFMIMTASRIGELLSSKATCCHHGGGRGVLFVHVPAP
PTPARLARFRTSGLWTSDVYHQNAQGAGRCVFRRSSNGCGRIQRVVHNSC
WSRMDATAAGDQGGGGRRGPLPKKRPLVYLGEAVNDAILEMCVVNKGRPL
ARSMTDFVEYSIEALASGYSVEALLLELQLLDSITRVPGETLTGVEKRYR
TQWITALHAVMQNLKYMEEQEPRTAEEFHIKSQVDVVLRGRQTNDEQTFV
KFDKALATGGVAGGVATECIVISPQVVPLSQLILLAIRALQKLEDAAAA*
back to top

mRNA from alignment at P-littoralis_Contig6:516108..519484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.135.1 ID=mRNA_P-littoralis_Contig6.135.1|Name=mRNA_P-littoralis_Contig6.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3377bp|location=Sequence derived from alignment at P-littoralis_Contig6:516108..519484- (Pylaiella littoralis U1_48)
CCCCGACCGTCGACCGTCGAGACTTCGAGACACACAGCAGAGACAGCAAG
CAGAGCGGAGGATATGTGTCCATAGTCCACACCCTTTGCAGCAGCAGATG
AGGAGTAGCGCACAGTAGCAGTATTCACACACATCACCTGGTACTCTACA
GCACGACACAGAGGCCCGGTCTTGCCACCACCGGGTACCTTCATACCATG
ATGCCTTGTGGCCTTACACGATCATGCCGCAATCTGCTGTTCATGATCAT
GACTGCCTCTCGAATAGGAGAGCTGTTATCTTCCAAAGCAACATGTTGCC
ATCACGGCGGTGGACGAGGAGTTTTGTTTGTGCATGTTCCCGCCCCGCCC
ACTCCCGCACGGCTGGCGAGATTTCGAACATCGGGGTTGTGGACCAGTGA
CGTTTACCACCAGAACGCCCAAGGTGCAGGGCGGTGTGTTTTCCGAAGAA
GCAGCAACGGTTGCGGGAGAATCCAGAGAGTAGTCCACAACAGCTGTTGG
AGCAGAATGGATGCAACCGCAGCCGGGGACCAGGGAGGGGGGGGTAGGCG
TGGACCTCTGCCGAAGAAACGGCCCTTGGTGTATCTGGGCGAGGCGGTGA
ACGATGCAATTTTGGAGATGTGCGTGGTAAATAAGGGCCGACCGCTGGCC
AGATCGATGACGGATTTTGTCGAGTACAGTATCGAGGCCCTGGCGTCTGG
TGAGCTGCTGCTGTAGTCTAAATGCTGTGTATCGGATACTCGTTACCTGG
CTGCAAAGCATTTTGTTCACCCGGAGCTGACAGCAGTGCTGGAGTGCGAT
GAGGGTTAATCCTACACACCACACACAAGTAGTCAGCAAAATAGAGGCTT
TCGGAGGTCAAGTTCCTGAGCCTCTCTCCGGAGATCGATTGGCCCCTGTT
GTCGCGCTTCTACGAATTTGACTCTTTGCGATGAAGATAGCATGTTTTTA
CTGCGCTTTTTCTCGTCTCTGATCCAGTTTCTCAGTATCATCAGAATATC
ATACTGCTGTGAGGACAAGCATATGCTAGGGATCGAAACCCCTTCATGTT
TTGGGTTTATCGTTAGTATTAAACATTTCGATCAGTCAAAAACATTGTAA
ATACCCCCAGCTAAAACAGGAAGAGACAACGGTACAAAAAAAGCTGCAAG
TTACCTTACCAAAACCGATCGTGGCTACCGGTTGTTTCAGAAAGGACGGT
ATACTTGGCATACGGGGCTGCACAAAGCGTAAACATAGTTCCTTCATGTT
CAAACTTAGAAAGACATTTAAATGGCCGCAGTTTCCTATCGGTCAACATA
GGCGCCACTGGTTTCAATTGGTACCTTTTAGTCTACTGGGCCCCAGAACA
AGGGAATAACGCCCTACGTTCTTGAAGGCGTTCTTGAACCGGGATAGAAC
TCGCCCGTACGGTGTTCGAATAAAAACCGCGCTTGCATCCCCTCTCGTGT
GTCGGGGCTATATTGTTCGGGTCAATGCGTGAAGTTTCACTCACGTCCTT
GTGTGTACCTGATCTGCTTTTTTCCGTATGTAGGGTACTCGGTGGAGGCG
CTGCTCTTGGAGCTCCAGCTGCTGGACAGCATTACACGAGTGCCGGGGGA
GACCCTCACGGGCGTCGAAAAGCGGTACCGCACGCAATGGATAACGGCAC
TGCACGCCGTAATGCAGAATGTAAGTCCCGTGTGTTGTCCACGGTAGTAC
TGGTTTGACTGAAGAGGCTTATATTGGTGTTGGTGGCGGTATTTTCCTAA
CGAAACCCCTCTGCAGCCACATTCACAATAATAGGCACTGATCTTTTTCT
GCCTCTTTTGTCATGTGCATCGTCGTCACTTGCGCGTTTCCCTTGCGCAG
CTAAAGTACATGGAGGAGCAGGAACCAAGGACAGCCGAGGAGTTCCACAT
TAAGAGTCAGGTATGCTGACATGCGACGGGTGATAATTCCGCACGGCCGT
GGGGATCGTCATGTGGGAAGCGTGGTGGGAGCGAAATATCTGCAGCGACT
TTGGGGGGGATGGGGGGATTCTACAAGCCAATCATGACATATCTCGCCGC
CAGCACACATAATCGCCCACCGCTCGTATGCACCGTGCACAATTTTCTAG
GTGGACGTGGTTCTGCGAGGGAGGCAAACTAACGACGAGCAGACCTTCGT
CAAATTCGACAAAGCCTTAGCTACCGGCGGAGTCGCTGGCGGTGTGGCCA
CTGGTGAGACCCGCCGCTTCTTCACCCGTGCTTGGGAGTCTTACGACTCG
CTTCGTTTCGCCTTTTTTTATTGGTTTTGTTTACCGAACGCTTTATTTTG
GGTCGGCGACTGGTTTTCGAAAATGCCGGTGTTACTGCCGCCAATGTATC
TTTGAACTATGGTATGAGGACCGAACGGTTTCTGAAAAACAAGGCTTGAC
TGGTTTTGTTGACAAGCAAACGTGATATCTTGTCGGCGAGGTGCTACACA
TCAAGCGATTTGAACTGCGGAAAGTAGTGTGTAACCGTAGTGTTTTTGGA
ACACTTCCCTCTTCCTACCTTGCCCCTGCCCTTTGCCGGAAGATATTTTT
TCTTTTCGCGCCTCACCCGTTTCACCCTTGCCGCCTCGTAGCATCGCTCT
CTGTTTCACCTCCTTGCCATCGATGCCCGCTGTTGTTGCCTTCTTTCCTT
CGGCGTGTTCGTGTGCGTATGCTTAATTTTTCAACGGCCCGACCCACCAC
CCGACCTGTCCATGCCGTGAAGAGTGCATCGTGATATCGCCACAAGTGGT
TCCTTTGTCTCAGCTGATACTGTTGGCTATTCGAGCCCTTCAGAAATTGG
AAGATGCGGCGGCGGCGTAAAATGTAGCTGCACCTCGGAGGCGGAGGAGT
ATGAAACTGGTACCACGTACCTGCTGTGCGGGTAGAACCTCCCACCGGCG
GCTGGTCTTAATGTTAAAACCACACAGCGAAATTATGGATGCCGAGCGTA
TCTTGTAAAACAAGGCCTGGCCATTCTTGATCTGTGTTTGGGGGATTTTA
CGTATTTCTCTTTAATTTGAGGCTGAACCACGCTGAATTTCCGCCGATTG
ACCATTGTCCGCCCCACAATATGGGCAGGAGGATACGTTTTGATCTGAAA
AAAAAAATGCCTCTGGGTGAACTTCTATTCGTTGCAAGTACGAGGAAGAA
ATGATCGATGTACGTCGTCTCCTTTAATTGGGTGTCGTTGGCTGAATTCG
CTGTCCTAGATTTCGTTCCAGCACGCCCAGTCTCGGCCACATTTGGGAGA
GTCATTATTTACTCTTGTCAATCAGCTTGGATCTGTCGGCCGAAGGGAGT
GCAGCGGTCATTTCGGGAAAGGACGTTTGTCTCCACTTAAGTGTTGATTT
TGGGGAAAGATGTAGAAAACACACATC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig6:516108..519484-

>mRNA_P-littoralis_Contig6.135.1 ID=mRNA_P-littoralis_Contig6.135.1|Name=mRNA_P-littoralis_Contig6.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=900bp|location=Sequence derived from alignment at P-littoralis_Contig6:516108..519484- (Pylaiella littoralis U1_48)
ATGATGCCTTGTGGCCTTACACGATCATGCCGCAATCTGCTGTTCATGAT
CATGACTGCCTCTCGAATAGGAGAGCTGTTATCTTCCAAAGCAACATGTT
GCCATCACGGCGGTGGACGAGGAGTTTTGTTTGTGCATGTTCCCGCCCCG
CCCACTCCCGCACGGCTGGCGAGATTTCGAACATCGGGGTTGTGGACCAG
TGACGTTTACCACCAGAACGCCCAAGGTGCAGGGCGGTGTGTTTTCCGAA
GAAGCAGCAACGGTTGCGGGAGAATCCAGAGAGTAGTCCACAACAGCTGT
TGGAGCAGAATGGATGCAACCGCAGCCGGGGACCAGGGAGGGGGGGGTAG
GCGTGGACCTCTGCCGAAGAAACGGCCCTTGGTGTATCTGGGCGAGGCGG
TGAACGATGCAATTTTGGAGATGTGCGTGGTAAATAAGGGCCGACCGCTG
GCCAGATCGATGACGGATTTTGTCGAGTACAGTATCGAGGCCCTGGCGTC
TGGGTACTCGGTGGAGGCGCTGCTCTTGGAGCTCCAGCTGCTGGACAGCA
TTACACGAGTGCCGGGGGAGACCCTCACGGGCGTCGAAAAGCGGTACCGC
ACGCAATGGATAACGGCACTGCACGCCGTAATGCAGAATCTAAAGTACAT
GGAGGAGCAGGAACCAAGGACAGCCGAGGAGTTCCACATTAAGAGTCAGG
TGGACGTGGTTCTGCGAGGGAGGCAAACTAACGACGAGCAGACCTTCGTC
AAATTCGACAAAGCCTTAGCTACCGGCGGAGTCGCTGGCGGTGTGGCCAC
TGAGTGCATCGTGATATCGCCACAAGTGGTTCCTTTGTCTCAGCTGATAC
TGTTGGCTATTCGAGCCCTTCAGAAATTGGAAGATGCGGCGGCGGCGTAA
back to top