mRNA_P-littoralis_Contig6.119.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI) HSP 1 Score: 524 bits (1350), Expect = 7.470e-174 Identity = 298/466 (63.95%), Postives = 341/466 (73.18%), Query Frame = 3
Query: 258 VDFPRWHPDQQRHRFNASGRIPATVTPLRRRRRRSFPSPNG---------AVAKAAVVLFVTVSSFCLVSPTVGLVIEEPFFATFDHVAAAFGPNVLSVEPPVESRPLVKARPRDGCSPLLTSMDNRAIALVERGSCNFTQKVLNAQDAGASAVIVSDTPTTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRLWNNRSWIPGT-GRLRASLGAAGHIELDTRRAGAVEMVGIYLLLSVLLMAFSGVCGLLFALALTWWVYQRGYRARAMRKLKCFTFRRKYPPPSGTPVDANQITDSSRSDDRRSSETKAGRGGSAAVAVTVVDQHARPSSCNTGGTASAGPPSQRRGHPDKSSSSGNGDMRAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKADAFGKGGLLSAAAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAQLSL 1625
++ P D+ +H +GR P R + P+ G A A AA VL T+ S CL +GLVIEEPF ATFDHVAAAFGP+VLS EPPVESRPLV+A+PRDGC PL +MD AIALVERG+CNFTQKVL+AQ AGASAV+V+DTP T+KW MVMYGD EN +GI+IPAVLVSHATG+RLW+NRSW+PG GRLRAS+GAAGHI + R GA+EM+GIYLLLSVLL+AFSGVCGL+FAL TW YQRGYR RAMRKLK FTFRR+ PPP T ++SD +S + +GR A VD +S GT SA D SSS+ NG MR EDDDLCAICLET+EDG+SLTGLPCRHSFH +CIRPWLSGKSALCPMCK++AFGKGGL A APRLEAAFAELAALCTENLAVLGLFFLASVACGVIAA+LSL
Sbjct: 36 IEEPASRRDKHQHGLGRAGRCPRWRHRPSGSRGATLPATGGGAVWFAWPTAGATAAAVLVTTLLS-CLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTW--YQRGYRTRAMRKLKSFTFRRRPPPP----------TLGNQSDPAGTSSSNSGR------ASGTVDATTGQASSLGNGTGSAA-------SEDNSSSNDNGFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSL 475
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: A0A4D9CZZ7_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA) HSP 1 Score: 178 bits (451), Expect = 6.020e-44 Identity = 134/403 (33.25%), Postives = 198/403 (49.13%), Query Frame = 3
Query: 453 LVIEEPFFATFDHVAAAFGPNVLSVEPPVESRPLVKARPRDGCSPL-------------------LTSMDNRA-IALVERGSCNFTQKVLNAQDAGASAVIVSDTPTTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRLWN---------NRSWIPGTGRLRASLGAAGHIELDTRRAGAVEMVGIYLLLSVLLMAFSGVCGLLFALALTWWVYQRGYRARAMRKLKCFTFRRKY----------PPPSGTPVDANQITDSSRSDDRRSSETKAG-RG--GSAAVAVTVVDQHAR-----PSSCNTGGTASAGPPSQRRGHPDKSSSSGNGDM---------------RAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKADAF 1475
LV+++P + HV AAFGPN+L +E P+ +R LV P D CS L L++ R IAL++R CNFT+KV AQ A A+ VIV D+ E+W +M G +E I IP+V VSH+TG L N + G R+R +L GH+ T++ G +E + Y+++S++L++FSG CGLL AL +T YQR +R RA+R LK ++RK G+ + SR+ + + G RG G ++ + Q +R P+ + ++G + RG +G+G+ E+ CAICL+ +EDG+ L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 23 LVVDQPCCSKHLHVPAAFGPNILGLESPLHARQLVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGKIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVT--CYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASPTSLPDRRKGLRGLWGLLSLRRVMDKQRSRIPLPLPAHPHLESLPASGL-GKGRGGRFPCPLTGDGEAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 422
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: W7TBK1_9STRA (Protease-associated RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.550e-41 Identity = 136/396 (34.34%), Postives = 186/396 (46.97%), Query Frame = 3
Query: 498 AAFGPNVLSVEPPVESRPLVKARPRDGCSPLLT---------------------SMDNRAIALVERGSCNFTQKVLNAQDAGASAVIVSDTPTTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRLWN---------NRSWIPGTGRLRASLGAAGHIELDTRRAGAVEMVGIYLLLSVLLMAFSGVCGLLFALALTWWVYQRGYRARAMRKLKCFTFRRKYPPPSGTPVDANQITDSSRSDDR-------RSSET------KAGRG--GSAAVAVTVVDQ----------HARPSSCNTGGTASAGPPSQRRGHPDKSSSSGNGDM---------------RAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKADAF 1475
AAFGPN+L +E P+ +R LV P D CS L S+ R IAL++R CNFT+KV AQ A A+ VIV D+ E+W +M G +E I IP+V VSH+TG L N + G R+R +L GH+ T++ G +E + Y+++S++L++FSG CGLL AL +T YQR +R RA+R LK ++RK S P+ A D S R+S T K RG G ++ + Q H R S G A RG +G+G+ E+ CAICL+ +EDG+ L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 10 AAFGPNILGLESPLHARELVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGR-IALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVT--CYQRAFRHRALRGLKVEKYQRKKV--SQQPLLAYNSKDKGSSASTSPSALLSRASPTSLPDRRKGLRGLWGLLSLRRVINKQRSRIPLPLPAHPRLESVPASGLGKA------RGGRSPCPLTGDGEAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 394
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: A0A7S2RLQ5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLQ5_9STRA) HSP 1 Score: 122 bits (305), Expect = 4.330e-25 Identity = 115/383 (30.03%), Postives = 158/383 (41.25%), Query Frame = 3
Query: 450 GLVIE-EPFFAT--FDHVAAAFGPNVLSVEPPVESRPLVKARPRDGCS---------PLLTS---MDNRAIALVERGSCNFTQKVLNAQDAGASAVIV-SDTPTTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRLWNNRSWIPGTG-------RL---------------RASLGAAGHIELDTRRAGAVEMVGIYLLLSVLLMAFSGVCGLLFALALTWWVYQRGYRARAMRKLKCFTFRRKYPPPSGTPVDANQITDSSRSDDRRSSETKAGRGGSAAVAVTVVDQHARPSSCNTGGTASAGPPSQRRGHPDKSSSSGNGDMRAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKADAFGKG 1484
GLV+E P A F HV AAFG + V + LV A P+ GC P S +++ L++RG CNFT KV+ AQ GA+A I+ D P ++WE+ M + + IP++ VS+ TG RLW + I GTG RL R S+ A G++ + + +E IY+++S+ L+ S L AL L W Y + R RA+ L F KY P + A T S S SE ++ P C D C+ICL+ + GE+L LPC H FH CI PWL +S CP+CK A G
Sbjct: 60 GLVLELSPGAAVEQFSHVPAAFG-----LHHDVTNLRLVPAEPKHGCECASGECLGRPAPVSPFGLEDGFALLIQRGQCNFTDKVIWAQHRGAAAAIICDDQPRDDRWEVTMSSQDQTPVPVSIPSIFVSYRTGQRLWQ-AAQIHGTGGGMTQRWRLLLSGVGFTAAGMRFPRVSVNATGNVMVSMQLVRPLETFIIYVVVSLALLTLSACLWLSLALGLAW--YTQLQRRRALMALHRF----KYDPSTTVAPPATPYTSPSASSH---SEKRS------------------PVLCR--------------------------------DTTCSICLDDYASGETLRALPCGHVFHDRCITPWLERRSVDCPLCKQPALPAG 377
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: A0A1V9Y6L8_9STRA (PA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6L8_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.700e-15 Identity = 53/123 (43.09%), Postives = 67/123 (54.47%), Query Frame = 3
Query: 453 LVIEEPFFATFDHVAAAFGPNVLSVEPPVESRPLVKARPRDGCSPLLTSMDNRAIALVERGSCNFTQKVLNAQDAGASAVIVSDT---PTTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRL 812
LVIE P A H+ A FG V + + + A P C+PL + + IALV+RG CNF+ KVLNAQ A A AVIV D E W + M D N+ + IP+V VSH +GDRL
Sbjct: 18 LVIERPCCAKLRHIHARFGRRVTNSDEYTRLE-VATAVPIQSCAPLRNDLHGK-IALVKRGGCNFSYKVLNAQRAHAKAVIVYDDYPRQRNESWAIRMVPDHTNSSSVFIPSVFVSHESGDRL 138
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: A0A024UE84_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE84_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.980e-13 Identity = 53/122 (43.44%), Postives = 65/122 (53.28%), Query Frame = 3
Query: 453 LVIEEPFFATFDHVAAAFGPNVLSVEPPVESRPLVKARPRDGCSPLLTSMDNRAIALVERGSCNFTQKVLNAQDAGASAVIVSDTP--TTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRL 812
LVIE P HV A FG N + V LV RP D CS + + + +AL+ RG+CNF KVL AQ AGA AV+V D+ W + M GD NA + IP+V VS A G RL
Sbjct: 24 LVIERPCCHVERHVPARFG-NFYPKD--VNKLELVAVRPFDACSRIRNDIAGK-VALMARGNCNFAHKVLQAQVAGAKAVVVMDSEHRVNTSWVVTMIGDAGNATQVVIPSVFVSRAIGLRL 141
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: W4GRN5_9STRA (PA domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRN5_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.080e-13 Identity = 53/133 (39.85%), Postives = 67/133 (50.38%), Query Frame = 3
Query: 432 LVSPTVGLVIEEPFFATFDHVAAAFG----PNVLSVEPPVESRPLVKARPRDGCSPLLTSMDNRAIALVERGSCNFTQKVLNAQDAGASAVIVSDTP--TTEKWEMVMYGDKENAKGIEIPAVLVSHATGDRL 812
+V P LVI+ P HV A FG +V+ +E LV RP D C + + + +AL+ RG CNF KVL AQ AGA AV+V D W + M GD NA + IP+V VS A G RL
Sbjct: 18 IVLPLNALVIDRPCCNVERHVPARFGHLYPKDVVQLE-------LVVVRPFDACGLIRNDLSGK-VALMVRGDCNFAHKVLQAQTAGAKAVVVMDNEHRMNNSWVVTMVGDPGNASQVVIPSVFVSRAIGLRL 142
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: A0A3M7LWG7_9PLEO (RING-8 n=1 Tax=Pyrenophora seminiperda CCB06 TaxID=1302712 RepID=A0A3M7LWG7_9PLEO) HSP 1 Score: 79.0 bits (193), Expect = 1.460e-11 Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 3
Query: 1308 DMRAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKAD 1469
DM AE D CAIC++T ED + + GL C H+FHA C+ PWL+G+ A CP+CKAD
Sbjct: 249 DMLAEPGDTCAICIDTLEDDDDIRGLACGHAFHASCVDPWLTGRRACCPLCKAD 302
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: A0A6G0WJ90_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJ90_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.190e-11 Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 1314 RAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKADAFGKGGLLS 1496
+++D+DLC+ICLETFE + LPCRH FH ECI PWL +S+ CP+CK +A L++
Sbjct: 225 KSDDEDLCSICLETFERETLVKVLPCRHEFHQECIDPWLENRSSQCPLCKREALDNASLVT 285
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Match: B2WPN9_PYRTR (RING-8 protein n=2 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=B2WPN9_PYRTR) HSP 1 Score: 77.8 bits (190), Expect = 3.410e-11 Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 3
Query: 1308 DMRAEDDDLCAICLETFEDGESLTGLPCRHSFHAECIRPWLSGKSALCPMCKAD 1469
+M AE D CAICL+T ED + + GL C H+FHA C+ PWL+G+ A CP+CKAD
Sbjct: 243 EMLAEPGDTCAICLDTLEDDDDVRGLTCGHAFHASCVDPWLTGRRACCPLCKAD 296 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig6.119.1 >prot_P-littoralis_Contig6.119.1 ID=prot_P-littoralis_Contig6.119.1|Name=mRNA_P-littoralis_Contig6.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=508bp MDFPDFRPSVLLGSRQRTTAHGSTGGSSCCCTKIIRNKELTSACNPNNDVback to top mRNA from alignment at P-littoralis_Contig6:446537..457848- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig6.119.1 ID=mRNA_P-littoralis_Contig6.119.1|Name=mRNA_P-littoralis_Contig6.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11312bp|location=Sequence derived from alignment at P-littoralis_Contig6:446537..457848- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig6:446537..457848- >mRNA_P-littoralis_Contig6.119.1 ID=mRNA_P-littoralis_Contig6.119.1|Name=mRNA_P-littoralis_Contig6.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1524bp|location=Sequence derived from alignment at P-littoralis_Contig6:446537..457848- (Pylaiella littoralis U1_48)back to top |