prot_P-littoralis_Contig6.117.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig6.117.1
Unique Name	prot_P-littoralis_Contig6.117.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	331

Homology

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.060e-126
Identity = 218/257 (84.82%), Postives = 229/257 (89.11%), Query Frame = 0

Query:   50 DSATPPSVPEEKLDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYGLGXXXXXXXXXAVXGMGAGGMPYGMMNGMGGPMMNGQQPNYVFPGPGARGGMYGRGSM 306
            +  TPP VPE KLDGKELL ALKKQVEFYFSKQNLQ+DGFLVSKMNA MCVPV VIAQFHKIQQLTSDTALI ESVKDSTVCTVTPDGIKPSIKQERNTIILREIPS+TPQEKIR+IFTGDGVAPIK++RSDVGDTWFVTM+SEDDAL TILALR K+FEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAA+APYGLG         A  GM  GG+PYGMMNGMG PMMNGQ PNY + GPGARGGMYGRG M
Sbjct:   57 EGTTPPVVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAAAAPYGLGAGP------AGAGM-PGGIPYGMMNGMGAPMMNGQ-PNYGYSGPGARGGMYGRGGM 305

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.650e-121
Identity = 249/308 (80.84%), Postives = 260/308 (84.42%), Query Frame = 0

Query:    1 MIMEDSPISVAVPPMTTEVGAXXXXXXXXXXXXXXXXXXXXXTDTAPA--VDSATPPSVPEEKLDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYGLGXXXXXXXXXAVXGMGAGGMPYGMMNGMGGPMMNGQQPNYVFPGPGARGGMYGRGSM 306
            M ME+SP  V VPP+T E   XXXXXXXXXXXXXXXXXXXXX         +  +PP VPE KLDGKELL ALKKQVEFYFSKQNLQ+DGFLVSKMNA MCVPV VIAQFHKIQQLTSDTALI ESVKDSTVCTVT DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIK++RSDVGDTWFVTM+SEDDALNTILALR K+FEGKAIKARLKSENLLRSFFPVPTAAEVQPTAA          XXXXXXX  A  GM  GG+PYGMMNGMG PMMNGQ PNY + GPGARGGMYGRG M
Sbjct:    1 MRMENSPGPVEVPPVTPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXAGA--GM-PGGIPYGMMNGMGAPMMNGQ-PNYGYSGPGARGGMYGRGGM 304

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A7S4DKN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK)

HSP 1 Score: 224 bits (571), Expect = 6.020e-69
Identity = 115/176 (65.34%), Postives = 143/176 (81.25%), Query Frame = 0

Query:   62 LDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQP 237
            L+G+ L EA+KKQ+EFYFS+QNLQTDGFLVSKMNA+M VP+ VIA+F KI+ LT +  +I  +++ S VC VT D IKP+ K ERNTIILREIPS TP+EK+REIFTG+G+API  +RSDVGDTWFVT+ SE  A+   LALR ++FEG+ +KARLKSENLLR+F+PVP AA   P
Sbjct:   31 LEGEALREAVKKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREIFTGEGMAPITNIRSDVGDTWFVTLGSEAAAVAACLALRERAFEGRPVKARLKSENLLRAFYPVPQAAADAP 206

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A836CHL1_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 8.520e-69
Identity = 115/176 (65.34%), Postives = 145/176 (82.39%), Query Frame = 0

Query:   61 KLDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEK-------IREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPV 229
            +L+GKEL++AL++QVEFYFSK NLQ+DGFLVS+M+A  CVP+ VIAQF K++ LT+D   IA +V +S+VCTVTP GI+P++K ER+TIILREIPS+TP  K       +RE+F G+G+API+ VRSDVG TWFVT  SE DA+ TILALRS++FEGK +KARLK ENLLRSFFPV
Sbjct:   47 RLEGKELVDALRQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTPPAKASCCCTCVRELFAGEGMAPIRGVRSDVGATWFVTCASEADAMATILALRSRTFEGKPVKARLKGENLLRSFFPV 222

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A2P4XI52_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XI52_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.960e-57
Identity = 112/189 (59.26%), Postives = 144/189 (76.19%), Query Frame = 0

Query:   62 LDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYG 248
            L+G EL +A+K+QVEFYFS+ NL  D +LVS+MN+ M VPV VI  F KI+QLT +TAL+ E+V+DST+C++  + D IKP+IK ER TIILREIPS T  E++  IF G G   + +VRSDVGDTWFVTM+SE +A++T+LALRSK+F G AIKARLKSEN+L+SF+P   A  V    A +A APYG
Sbjct:    9 LEGAELKQAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPTQPAENV---IAPSAGAPYG 192

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A0W8DNS3_PHYNI (Ammonium Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI)

HSP 1 Score: 196 bits (499), Expect = 1.170e-56
Identity = 110/188 (58.51%), Postives = 140/188 (74.47%), Query Frame = 0

Query:   63 DGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYG 248
            +G EL EA+K+QVEFYFS+ NL  D +LVS+MN+ M VPV VI  F KI+QLT D AL+ ++V+DSTVC++  + D IKP+IK ER TIILREIPS T  E++  IF G G   + +VRSDVGDTWFVTM+SE +A++T+LALRSK+F G  IKARLKSEN+L+SF+P   A  V    A +  APYG
Sbjct:   10 EGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKSFYPTQPAENV---IAPSVGAPYG 192

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A6G0W682_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W682_9STRA)

HSP 1 Score: 198 bits (503), Expect = 6.580e-56
Identity = 116/193 (60.10%), Postives = 137/193 (70.98%), Query Frame = 0

Query:   60 EKLDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDG--IKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPT--AAEVQPTAAAAASAPYG 248
            EK  G  L +A+K QVEFYFSK NL  D FLVS+MNA M VP+ VI  F KI+QLT D AL+ E++KDS VC+++P+G  IKP+IK ERNTIILREIPS T  + +  IF  DG   + +VRSDVGDTWFVTM SE+ A+NT+LALRSKSF    IKARLKSEN+LRSF P  T  AA   PT   A    YG
Sbjct:    4 EKPVGDALKDAVKNQVEFYFSKANLANDSFLVSQMNAQMYVPLDVILGFSKIKQLTEDAALVVEAIKDSKVCSLSPEGDAIKPNIKSERNTIILREIPSATEPKVVEAIF--DGCGTVTSVRSDVGDTWFVTMASEEVAVNTLLALRSKSFNDAPIKARLKSENILRSFIPTDTSAAASTSPTPYQATKPYYG 194

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A024TXK9_9STRA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.380e-55
Identity = 109/172 (63.37%), Postives = 131/172 (76.16%), Query Frame = 0

Query:   62 LDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDG--IKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPT 231
            L G  L EALK QVEFYFSK NL  D FLVS+MN+ M VPV VI  F KI+ LT+D AL+ +S+KDSTVC+++P+G  IKP+IK ERNTIILREIPS T  + +  IF G G   + +VRSDVGDTWFVTM +E+DA+NT+LALRSK+F    IKARLKSEN+LRSF P  T
Sbjct:    7 LSGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIFEGCGT--VASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPEST 176

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: A0A0P1AUF3_PLAHL (La-related protein 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF3_PLAHL)

HSP 1 Score: 192 bits (489), Expect = 1.700e-55
Identity = 109/193 (56.48%), Postives = 139/193 (72.02%), Query Frame = 0

Query:   58 PEEKLDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYG 248
            P + L+G EL EA+K+QVEFYFS+ NL  D +LVS+MN+ M VPV VI  F KI+QLT +T L+ E+V+DSTVC+++   D IKP+IK ER TIILREIPS T  E++  IF   G   +  VRSDVGDTWF+TM SE +A++T+LALRSK+  G AIKARLKSEN+L+SF+P   A  V    A +   PYG
Sbjct:    5 PVKALEGAELKEAIKRQVEFYFSRSNLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFKDCG--KVIGVRSDVGDTWFITMSSEAEAVDTLLALRSKTLNGAAIKARLKSENILKSFYPTQPAENV---IAPSVGVPYG 192

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BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Match: G4YGZ8_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YGZ8_PHYSP)

HSP 1 Score: 198 bits (504), Expect = 3.630e-55
Identity = 110/188 (58.51%), Postives = 140/188 (74.47%), Query Frame = 0

Query:   63 DGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCVPVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTILALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYG 248
            +G EL EA+K+QVEFYFS+ NL  D +LVS+MN+ M VPV VI  F KI+QLT D AL+ E+V+DST+C++    D IKP+IK ER TIILREIPS T  E++  IF  DG   + +VRSDVGDTWFVTM++E +A++T+LALRSK+F G AIKARLKSEN+L+SF+P   A  V    A +  APYG
Sbjct:   26 EGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEAIF--DGCGKVASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPSQPAENV---IAPSVGAPYG 208

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig6.117.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KRS0_9PHAE	2.060e-126	84.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LL21_ECTSI	1.650e-121	80.84	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S4DKN7_HETAK	6.020e-69	65.34	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A836CHL1_9STRA	8.520e-69	65.34	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A2P4XI52_9STRA	2.960e-57	59.26	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A0W8DNS3_PHYNI	1.170e-56	58.51	Ammonium Transporter (Amt) Family n=1 Tax=Phytopht...	[more]
A0A6G0W682_9STRA	6.580e-56	60.10	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A024TXK9_9STRA	1.380e-55	63.37	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A0P1AUF3_PLAHL	1.700e-55	56.48	La-related protein 4 n=1 Tax=Plasmopara halstedii ...	[more]
G4YGZ8_PHYSP	3.630e-55	58.51	Uncharacterized protein n=5 Tax=Phytophthora TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 65..145 e-value: 3.3E-17 score: 73.2
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 71..126 e-value: 1.7E-17 score: 63.1
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 61..150 score: 19.25975
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 64..144 e-value: 3.0E-21 score: 77.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 145..225 e-value: 3.3E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..54
None	No IPR available	PANTHER	PTHR22792:SF131	LA-RELATED PROTEIN LARP4B	coord: 26..233
None	No IPR available	CDD	cd12430	RRM_LARP4_5_like	coord: 147..220 e-value: 9.28871E-27 score: 98.9436
IPR045180	La domain containing protein	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 26..233
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 147..220 score: 9.302753
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 65..140
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 140..224

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig6	contig	P-littoralis_Contig6:435371..443710 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig6.117.1	mRNA_P-littoralis_Contig6.117.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig6 435371..444351 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig6.117.1 ID=prot_P-littoralis_Contig6.117.1|Name=mRNA_P-littoralis_Contig6.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=331bp
MIMEDSPISVAVPPMTTEVGAAAATATAGGGSSDKPSAAAAATDTAPAVD
SATPPSVPEEKLDGKELLEALKKQVEFYFSKQNLQTDGFLVSKMNAHMCV
PVVVIAQFHKIQQLTSDTALIAESVKDSTVCTVTPDGIKPSIKQERNTII
LREIPSETPQEKIREIFTGDGVAPIKAVRSDVGDTWFVTMDSEDDALNTI
LALRSKSFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAASAPYGLG
GMGGGGPGGAVGGMGAGGMPYGMMNGMGGPMMNGQQPNYVFPGPGARGGM
YGRGSMMMQQGAAGGAMRFGGGMQQQHAGMV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR036388	WH-like_DNA-bd_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045180	La_dom_prot
IPR000504	RRM_dom
IPR036390	WH_DNA-bd_sf
IPR035979	RBD_domain_sf