mRNA_P-littoralis_Contig6.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.97.1
Unique NamemRNA_P-littoralis_Contig6.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:376438..378947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons3
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791235.2391536-UTR-P-littoralis_Contig6:376437..3765761680791235.2391536-UTR-P-littoralis_Contig6:376437..376576Pylaiella littoralis U1_48UTRP-littoralis_Contig6 376438..376576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791235.2544806-CDS-P-littoralis_Contig6:376576..3766621680791235.2544806-CDS-P-littoralis_Contig6:376576..376662Pylaiella littoralis U1_48CDSP-littoralis_Contig6 376577..376662 +
1680791235.2681713-CDS-P-littoralis_Contig6:377498..3776191680791235.2681713-CDS-P-littoralis_Contig6:377498..377619Pylaiella littoralis U1_48CDSP-littoralis_Contig6 377499..377619 +
1680791235.2791877-CDS-P-littoralis_Contig6:378566..3789471680791235.2791877-CDS-P-littoralis_Contig6:378566..378947Pylaiella littoralis U1_48CDSP-littoralis_Contig6 378567..378947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.97.1prot_P-littoralis_Contig6.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 376577..378947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.97.1

>prot_P-littoralis_Contig6.97.1 ID=prot_P-littoralis_Contig6.97.1|Name=mRNA_P-littoralis_Contig6.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MDFSLDDLLDQVEGALNEEESPHRKLAPRRRGDEQRQENIASEWSPHHPL
ESSQPPESARGNKINMVAMYGTAAAAAAAAAESIPVSSAMTAGVMEATAS
PPTQVPTVRSLIDANFDSDSDDSPQRFATTKTAVPNYVNGVDFDSDSPDL
ERTTSPVRFAGAAGGHVGSDPAPLSVPKAVPGTTAVDVDFDSDDSP
back to top

mRNA from alignment at P-littoralis_Contig6:376438..378947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.97.1 ID=mRNA_P-littoralis_Contig6.97.1|Name=mRNA_P-littoralis_Contig6.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2510bp|location=Sequence derived from alignment at P-littoralis_Contig6:376438..378947+ (Pylaiella littoralis U1_48)
CTTTTCCGTAACCTTTGAGCAGCATCTCAGATCTCAGTGAAATATCTCTG
GCTTCTGGCGTTCGGGTGTAAATAAGGATGCCCGACAACAACAGTTACGT
GTAGACGCGCAAGGTATGCATATGCTTGATCACATGTGAATGGACTTCTC
GCTCGATGACCTCCTGGACCAAGTGGAAGGGGCCCTCAACGAAGAAGAAT
CTCCTCACCGAAAATTGGCGCCGCGGTAAGGGAAGATCTCTCCAATAAGG
ACCGTGGCTTTGGATTCTTTTGGATACATCGTTTCGATATGATTCATCGT
TTGGATATATCTTTTACTTGCTACAAGTACAGGTCGGTACAAAGCACTAC
GTACCTGGTATTATTTTTCGACATTTGCTCTGTTGGCACTTTTTAATAGC
CCAGCTGCATCAGTAGAGTACATCGTATTCACACACAGCGCGCAAGCACC
GGGTTTACCATACATACGATGACGAGTGCGGTCAGACTGCTGCTGCTGCT
GCGTTCAGCTCGCTACCTGTCTGTTTTGTGACCTATCCAAATAATTCAGG
CTATCGTGAGAACATGATCGATCCCTCTCTCGGGCCAAATGTCTCTGCAG
ATATTCATGTGGAGGCCATTCTGACTACAGAGTTGGTGCAGCCATGTCTT
TGAAGTTTTTACACGTGGAGAAGAAGCTGAAAATCCCAGTTGCTGATAAT
ACGGAAATACGCCAAATAAATGTGTCCGGCGCACAGCAGTTTTATGTACA
TTACAACACGACCGCAAGAAACACGCGTTTGGAGACCAACAATTAATTAT
CTATCGGAGAAACTCTTCAACTACCGGTAGATGGCATTTTTCTCAGGCCA
CCCAAGGTGTTCGTTCCGACCTGGACTGTTGAGGCACGGCGCGTACTGTA
CGTACCTGGTACCTGCCAAGGGGTCGACTACGTGAACCAAAGTCAACATT
CCCCCCTCAATAATACCCTGCATCATCATCAGCACTTGTATCATACTCGT
ATATACGAATCTCGCATCTGCGTGCCATGCATGGATGGGCAAAATGTCCT
TCATCTTGCAGAAGAAGGGGTGATGAGCAACGACAGGAAAATATCGCTTC
CGAGTGGAGTCCCCACCATCCACTGGAATCCAGCCAGCCGCCGGAATCTG
CACGCGGGAACAAGATCAACATGGTTGCGATGGTATAATGTTGTGATGTG
TGCGTTTTTATTTGAGTCATGATACATCTGTCAACGTAGGAAGGTTTTTT
TCGAGCTGCCAACGTTGGCAGGATTAATCATCCTGCCAACTATTAAAATG
TTTGCCATTGATTTCGACGCCATCGCCCATATCTCGTGAAACGAGCATCC
GGTGGCCAAAGCAGAAGGTGGGGCGGTTTGCCACGGCCTTGGGCTGTCCA
ACTAGGAGCTAAATCGTCGACCAAATAAAAAGGGGAACAAGTATGTGACG
CGGTCTTTTTTTATTTAGTCGACTTTAGTCGACGATATAGCTCCCACAGG
TAGGGCAGCCCAAGGCCGTGGCAAACCGTCTCAACTTCTACTTTGACCAC
CGAATGCTCGTGAAACGAGATGAGGACGGTGACATACTCTGTTGGCACAA
TTATTCAATCTACCAACGCTGGCGGCAAAACAAAACCTGCACACATTGGC
AGTTTTATCAAAATTCTTTGAGTTTCATACGGTGTGGCAGGGTGACGTAT
TTGTCGTCACATCACAGCAGAATCAAAGAGCCGTGTACGAGTATCAGTTT
ATGGGTTTTTTCTCCCGATTACTACTGAGTCGTGTGGTAGCGTAGATGCC
ATGTTTAGTTCATGTGAACACAGCAGTCAGTCTCGACGATATACTCGATG
ACACTTTCGGTAACCCCACCCTTCTGCAGTTTATATTTTGGGTCGTGCGT
ACGTAGCCTCTTCACAAGTATGCCGCCCCCACGGCAACTTCACACTTTCA
TGCATATGTATCATATCTTCATACATATTCATGCAAAAAAGATTTACCTT
CACCCTTCCTCCCATAGGTCAATTAACAATGCGCCACAGGACAAATTGCC
ACCCTACCAACAACGTGATTACTGCCATTATCGCCCGGGTCTCCTCGTCG
TGTCCAATTCCGTGCTTTGTCCTTCTCAGTATGGGACAGCAGCAGCAGCA
GCAGCAGCAGCAGCTGAATCAATACCCGTATCATCGGCGATGACAGCAGG
AGTGATGGAAGCGACGGCTTCTCCTCCGACACAAGTCCCGACGGTCCGTT
CCCTCATCGACGCCAATTTTGACTCTGATTCAGACGACTCTCCCCAACGA
TTCGCGACGACGAAGACGGCGGTTCCAAATTATGTCAATGGCGTAGATTT
TGATTCCGACTCTCCTGACCTTGAACGAACGACATCCCCTGTTCGCTTTG
CCGGGGCAGCAGGCGGTCATGTCGGTTCCGATCCAGCCCCTCTTTCAGTC
CCGAAGGCGGTTCCCGGCACCACTGCCGTGGACGTCGACTTTGATTCCGA
CGATTCTCCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig6:376438..378947+

>mRNA_P-littoralis_Contig6.97.1 ID=mRNA_P-littoralis_Contig6.97.1|Name=mRNA_P-littoralis_Contig6.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig6:376438..378947+ (Pylaiella littoralis U1_48)
ATGGACTTCTCGCTCGATGACCTCCTGGACCAAGTGGAAGGGGCCCTCAA
CGAAGAAGAATCTCCTCACCGAAAATTGGCGCCGCGAAGAAGGGGTGATG
AGCAACGACAGGAAAATATCGCTTCCGAGTGGAGTCCCCACCATCCACTG
GAATCCAGCCAGCCGCCGGAATCTGCACGCGGGAACAAGATCAACATGGT
TGCGATGTATGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCTGAATCAA
TACCCGTATCATCGGCGATGACAGCAGGAGTGATGGAAGCGACGGCTTCT
CCTCCGACACAAGTCCCGACGGTCCGTTCCCTCATCGACGCCAATTTTGA
CTCTGATTCAGACGACTCTCCCCAACGATTCGCGACGACGAAGACGGCGG
TTCCAAATTATGTCAATGGCGTAGATTTTGATTCCGACTCTCCTGACCTT
GAACGAACGACATCCCCTGTTCGCTTTGCCGGGGCAGCAGGCGGTCATGT
CGGTTCCGATCCAGCCCCTCTTTCAGTCCCGAAGGCGGTTCCCGGCACCA
CTGCCGTGGACGTCGACTTTGATTCCGACGATTCTCCT
back to top