mRNA_P-littoralis_Contig6.92.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig6.92.4 vs. uniprot
Match: D8LN18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN18_ECTSI) HSP 1 Score: 689 bits (1777), Expect = 1.020e-224 Identity = 577/1193 (48.37%), Postives = 675/1193 (56.58%), Query Frame = 1
Query: 325 LRQSMTAMSAAGTADAWIGGGSGADGDGGSAMMSGGDEEGLGLLRQQLSAVQRIRIEHERKDAAIAALRLEVATLRQQKEEMLALHRERSGEWTRLVKMEERCRRLEEGGRDTDRRWTREKEDWKKQLVEAQEQCRAERDRAE----------------------------------FRAGSMAERLNSELEGERARSRGLEEKLRVLEAGVTAAKDESGRLIPRLKTLEETNEALRVELAVASGRSSKAELELAQLNTYRPLMQHADSIDLKRAEAEDGLRAAAVELAREREALAAARQEAADLRLALDQSGSRLAVAETKVSREAAEVVARRASSELADIRGLLGEIAGSLARSTKTSADGPGNESPGWSSNSNGGGNSGAGDFPSVGLAVDGSSSRSXXXXXXARLISAVSAGVKGLLAERAAGASALREMGNRYSQGRREAEEASAGARERDAAHREQLVELRSWCESEVEAQRRAKKAAQTAADCALRDLSAAAKKISAFEKEKSRICARVAAADVHLSSLAEEASAAKTGLRLVARACAPLVERCRVLAAQKRLLIKWHGPATSATSAAAADGGQRDRMASPGCRFSGGAAAPTV-------------------AAQPRTAVLLVDELRSLVAALGRESREAEGQRQDGQHGRGLGPSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGNPDTGMFQXXXXXXXXXXXXQQPLVSLRAVGIAAVAVQRLLRLAACRAARRDSARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRSRPDTRLQQNNGSNDDGGVCDGNGDGGVISLGPRGSGG------VAMLAENEIVPPPSMSLALSSLLDRRATDGNGAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAARCLGLLSALVLENAS-----------WGRGWGVVRGSAGGAAXXXVMAGGVGEAGAGPSLLQAIAGGQLGHWWRLEKRGLVPSPPWDGRS---------ASRVFASRCERHHGRDAWKAQQRLAETEEAFRLLGATRRGTAALARLAGEAETRLLESEARRLRAKDEIEALAASKEALRAALDRKSELVSFLEERVHMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASARRKREAKKALKGAQAATQEK 3666
LR+S A+S GTA++W+ G G GGDEEGLGLLRQQLSAVQRIRIEHERKDA IAALRLE + DT RR TRE+E W+KQL + QEQCRAERDRAE FRAG++ ERLN+E+E ERA+SRGLE+KLRVLE + A RLIP +K+++ NEALR EL VAS R S+ ELELAQL YRPL++ AD ID +R AE+GLRAA EL+RER+ALAAA+ AA+LRLAL++ L DIRG L E++ LARS +A G SPGWS+N + A D P G G ++++A+SAGVKGLLAER ASALRE+ NR+SQG+REAEEASA R+RD AHREQLVELRSWCESEVEAQRRAK+AAQTAADCALRDLS A + IS FEKEK+RI A + LS++ EEASAAK GLRL+ARAC PL+ERCR+LA KRLL KWH + +Q T VL++D LRSLV AL ++ G ++GQ GRGLG +G AGN ++PLVSLRA IAAVAVQRL+RLAACRA+RR++ XXXXXXXXXXXXXXXXXXXX P+ SR + D G+ + +I LGPRGSGG V ML + ++V P SMSLAL SLL + DG G XXXXXXXXXX RC+GLL ALV+ +A +GRG+ G+A V G +A SLL+ +AGGQ+GHW R+EKRGLVP G S ASRV ASRC RHHG+D WKA Q A EEA LLGATRRGTAALARLAGEAE RLLESEA RL+AK E+EAL ASK+ALR AL++KSELVSFLEERV MMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASA+RKREA++A KGAQ A QEK
Sbjct: 90 LRESAAALSG-GTAESWMSGSGG-----------GGDEEGLGLLRQQLSAVQRIRIEHERKDATIAALRLEASA-------------------------------------DTARRCTREEEAWRKQLRDMQEQCRAERDRAEELAALEPALAKARSEAVAXXXXXARDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLRVLEEELAGA----NRLIPEVKSIQGANEALRAELVVASERRSEVELELAQLKVYRPLVERADFIDRRRVAAEEGLRAATAELSRERDALAAAKDGAAELRLALERREXXXXXXXXXXXXXXXXXXXXXXXXXLGDIRGFLVELSALLARSNAEAAS-DGEASPGWSTNGSSTIPPSASDAPGAGAGAGG----------CVKVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASADTRDRDTAHREQLVELRSWCESEVEAQRRAKRAAQTAADCALRDLSTARRLISDFEKEKARISGNAVALNARLSTVTEEASAAKNGLRLLARACWPLLERCRLLAEHKRLLAKWHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSQQPTMVLIIDGLRSLVDALSQD-----GDEEEGQAGRGLGSENGGGDPPAPASRAHGTPRRPGSSEGGGGCGEVGDT-AGNVHNHQHHDKRQQ-------RRPLVSLRATCIAAVAVQRLVRLAACRASRREAX----------------------------XXXXXXXXXXXXXXXXXXXXTAAGGRPSPSR-----------HGDAGIGEA-----IIPLGPRGSGGGSGGGGVPMLLDTQVVSPGSMSLALMSLLGDHSKDGTG----------DPSQAGGVACRGDGGXXXXXXXXXXXXGERCMGLLGALVVVDAGNISSAAATGEWFGRGF---EGTA-------VETGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASAQRKREARQARKGAQVANQEK 1141
BLAST of mRNA_P-littoralis_Contig6.92.4 vs. uniprot
Match: A0A6H5KPE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE9_9PHAE) HSP 1 Score: 224 bits (572), Expect = 1.500e-57 Identity = 266/629 (42.29%), Postives = 304/629 (48.33%), Query Frame = 1
Query: 1639 EVEAQRRAKKAAQTAADCALRDLSAAAKKISAFEKEKSRICARVAAADVHLSSLAEEASAAKTGLRLVARACAPLVERCRVLAAQKRLLIKWHGPATSATSAAAADGGQRDRMASPGCRFSGGAAAPTVAAQPRT-------------------AVLLVDELRSLVAALGRESREAEGQRQDGQHGRGLGPSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGNPDTGMFQXXXXXXXXXXXXQQ--PLVSLRAVGIAAVAVQRLLRLAACRAARRDSARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRSRPDTRLQQNNGSNDDGGVCDGNGDGGVISLGPRGSGG------VAMLAENEIVPPPSMSLALSSLLDRRATDGNGAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAARCLGLLSALVLENAS--------------WGRGWGVVRGSAGGAAXXXVMAGGVGEAGAGPSLLQAIAGGQLGHWWRLEKRGLVPSPPWDGRS---------ASRVFASRCERHHGRDAWKAQQRLAETEEAFRLLGATRRGTAALARLAGEAETRLLESEARRLRAKDEI 3375
+VEAQRRAKKAAQTAADCALRDLS A + IS FE+EKSRI AA + LS++ EEASAAK GLRL+ RAC PL+ERCR+LA KRLL KWHG + VL++D LRSLV AL +G ++GQ G GLG ++G G + G QQ PLVSLRA IAAVAVQRL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RP + G +D +I LGPRGSGG V ML + ++V P SMSLAL SLL + DG G + XXXXXXXX RC+GLL ALV+ +A G RG G A V+ G +A SLLQ +AGGQ+GHW R+EKRGLVP G S ASRV ASRC RHHG + WKA+Q A EEA LLGATRRGTAALARLAGEAE RLLESEA RL+AK EI
Sbjct: 20 QVEAQRRAKKAAQTAADCALRDLSTARRLISGFEEEKSRISGNAAALNARLSTITEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLMIDGLRSLVDAL-----RQDGDEEEGQAGGGLGSNNGRGGSPAPASRTHGTPRRPGSCEGG----------GGCGEVGDMAGNVHYHQNHDKRQQRRPLVSLRATCIAAVAVQRLV----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGRPSPSPHGDAGIRED-----------IIPLGPRGSGGGSSGGGVPMLLDTQVVSPASMSLALMSLLADLSKDGTGDPSQAGCVACRSDGGXXXXXXXXD-------------GERCMGLLGALVVVDAGNVSSXXXXXXXXXXXXAGEWFTRGDKGTA----VVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGPEVWKARQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEI 571
BLAST of mRNA_P-littoralis_Contig6.92.4 vs. uniprot
Match: A0A6H5KR29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR29_9PHAE) HSP 1 Score: 184 bits (468), Expect = 3.880e-50 Identity = 111/127 (87.40%), Postives = 120/127 (94.49%), Query Frame = 1
Query: 3403 LRAALDRKSELVSFLEERVHMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASARRKREAKKALKGAQAATQEKAARAQLQNELLSLRSYVLRSEQTVQELQEEARRQARETG 3783
+R AL++KSELVSFLEERV MMEGEASGTVPAAALAGTE+ALTESLAEVETLRVRSASLYAELAEASA+RKREA++A KGAQ A QEKA RAQLQ+ELLSLRSYVLRSEQTVQELQE+ARRQARE G
Sbjct: 1 MRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTERALTESLAEVETLRVRSASLYAELAEASAQRKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQG 127 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.92.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig6.92.4 >prot_P-littoralis_Contig6.92.4 ID=prot_P-littoralis_Contig6.92.4|Name=mRNA_P-littoralis_Contig6.92.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1276bp STRESSPRRRKHRATATTATTATLKLSSTPPAPRLRRRQRRPLQQPSPQQback to top mRNA from alignment at P-littoralis_Contig6:355412..374107+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig6.92.4 ID=mRNA_P-littoralis_Contig6.92.4|Name=mRNA_P-littoralis_Contig6.92.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=18696bp|location=Sequence derived from alignment at P-littoralis_Contig6:355412..374107+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig6:355412..374107+ >mRNA_P-littoralis_Contig6.92.4 ID=mRNA_P-littoralis_Contig6.92.4|Name=mRNA_P-littoralis_Contig6.92.4|organism=Pylaiella littoralis U1_48|type=CDS|length=3828bp|location=Sequence derived from alignment at P-littoralis_Contig6:355412..374107+ (Pylaiella littoralis U1_48)back to top |