prot_P-littoralis_Contig6.63.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig6.63.3
Unique Nameprot_P-littoralis_Contig6.63.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length326
Homology
BLAST of mRNA_P-littoralis_Contig6.63.3 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.340e-34
Identity = 209/351 (59.54%), Postives = 237/351 (67.52%), Query Frame = 0
Query:    1 MFCLNPPLKRAPKGDWLCPNCAKKIL-AAGENDADASG--------GKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------QLRLAALAVLDESSSEGA--GNEASNGIGXXXXXXXXXXXXXXXXXXXXIAKXXXXXXXXXXXXXXXXXXXXXDICLVCGQDGDAGKILRCCDCSGSGGGMGVYHSHCLKEQPPVDKPEGEWMCPRCVTKKRKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIASRGGEESLA----------KRMKREWSESQEALLATAVKKFGSGKWKQMAGDPDFDFEGKPPEALKFKWRAISKR 322
            ++CL+PPLKRAPKGDWLCP C +K+L A+G++D  AS         GK ++   XXXXXXXXXXXXXXXXXXXXXXXXX        ++RLAAL              N A+  +G  XXXXXXXXXXXXXXXXXX   XXXXXXXXX            DICLVC +  D  +ILRC  CSG G GMG+YH+ CL +       EGEW+CPRCVTKKRK GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       K+ +R WS S EALLATAVKK G+GKWK+M  DP+FDFEG P  ALK KWR +S++
Sbjct: 1179 VYCLSPPLKRAPKGDWLCPKCVEKVLDASGDDDVPASASTTGPARKGKGSSASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQEMRLAALXXXXXXXXXXXXLANNANGVVGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEEEEE-----DICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPRRAWSASMEALLATAVKKVGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQK 1524          
BLAST of mRNA_P-littoralis_Contig6.63.3 vs. uniprot
Match: D8LN06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN06_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.790e-31
Identity = 144/252 (57.14%), Postives = 162/252 (64.29%), Query Frame = 0
Query:   72 LRLAALAVLDESSSEGAGNEASNGIGXXXXXXXXXXXXXXXXXXXXIAKXXXXXXXXXXXXXXXXXXXXXDICLVCGQDGDAGKILRCCDCSGSGGGMGVYHSHCLKEQPPVDKPEGEWMCPRCVTKKRKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIASRGGEESLAKRM-KREWSESQEALLATAVKKFGSGKWKQMAGDPDFDFEGKPPEALKFKWRAISKR 322
            +RLAALAVL+ESS +   NE                           A XXXXXXXXXXXXXX       DICLVC +  D  +ILRC +CSG G GMG+YH+ CL +       EGEW+CPRCVTKKRK G     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 +R WS S EALLATAVKK G+GKWK+M  DP+FDFEG P  AL+ KWR +S++
Sbjct:    1 MRLAALAVLEESSED---NEEPANNANGVVDANESGEETESDGPEATAXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGGPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRAWSSSMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALRQKWRTLSQK 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.63.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU5_9PHAE1.340e-3459.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN06_ECTSI3.790e-3157.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..127
NoneNo IPR availableCOILSCoilCoilcoord: 49..78
NoneNo IPR availableGENE3D1.10.10.60coord: 262..322
e-value: 3.2E-9
score: 38.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..145
NoneNo IPR availablePANTHERPTHR47162OS02G0192300 PROTEINcoord: 140..205
coord: 1..70
IPR001005SANT/Myb domainSMARTSM00717santcoord: 269..322
e-value: 5.8E-4
score: 29.2
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 265..320
score: 6.922398
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 143..196
e-value: 0.0017
score: 27.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..28
e-value: 1.1E-6
score: 30.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 103..203
e-value: 4.2E-13
score: 51.1
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 141..198
score: 8.849199
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1..24
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 130..200
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 268..319

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:269524..273615 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.63.3mRNA_P-littoralis_Contig6.63.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig6 268566..273713 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig6.63.3 ID=prot_P-littoralis_Contig6.63.3|Name=mRNA_P-littoralis_Contig6.63.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=326bp
MFCLNPPLKRAPKGDWLCPNCAKKILAAGENDADASGGKAAAAEGKGAAA
KAKAAREAKEEEAREEEAKQQLRLAALAVLDESSSEGAGNEASNGIGGGE
GSGEETESDAEQARREAIAKVEQEEEVDDDDDDDDDDDDDEDICLVCGQD
GDAGKILRCCDCSGSGGGMGVYHSHCLKEQPPVDKPEGEWMCPRCVTKKR
KSGGGGGGGSGKSPAGKKKAKSGTGGKDSKSTAVAASKKRKGAATAEGGG
GSGSGIASRGGEESLAKRMKREWSESQEALLATAVKKFGSGKWKQMAGDP
DFDFEGKPPEALKFKWRAISKRFSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
IPR009057Homeobox-like_sf