mRNA_P-littoralis_Contig1156.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1156.1.1
Unique NamemRNA_P-littoralis_Contig1156.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1156.1.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.150e-10
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 KEKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSEL 267
            K KKR+RC HTL+VA+F+ + G  ST + +G       A+  ASSGG  LPRTPQ+      + Y  K+ DML Y+ R   PP  PS L
Sbjct:  119 KNKKRARCAHTLVVAVFSRI-GLDSTASSTGE----GGAAAGASSGGSALPRTPQVFLDSDAESYCSKLADMLTYMRRLALPPTAPSGL 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1156.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2H3_ECTSI2.150e-1044.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1156contigP-littoralis_Contig1156:10..300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categorysignal peptide
Exons1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789476.2305567-CDS-P-littoralis_Contig1156:9..3001680789476.2305567-CDS-P-littoralis_Contig1156:9..300Pylaiella littoralis U1_48CDSP-littoralis_Contig1156 10..300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1156.1.1prot_P-littoralis_Contig1156.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1156 10..300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1156.1.1

>prot_P-littoralis_Contig1156.1.1 ID=prot_P-littoralis_Contig1156.1.1|Name=mRNA_P-littoralis_Contig1156.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
KEKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVL
PRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSELPPVTAEAG
back to top

mRNA from alignment at P-littoralis_Contig1156:10..300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1156.1.1 ID=mRNA_P-littoralis_Contig1156.1.1|Name=mRNA_P-littoralis_Contig1156.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig1156:10..300+ (Pylaiella littoralis U1_48)
AAGGAAAAGAAGCGCTCAAGATGCGTGCACACGTTGATCGTCGCAATCTT
CACGGGCGTCTTGGGGCGGGGTTCGACCGTTGCGAGGAGCGGGACGACGG
CTGATGCAGATGATGCTTCTGGAAGTGCCTCGTCGGGTGGACCTGTGTTG
CCCCGTACTCCGCAGTTGCTCGCCAAGCGTTCCCCCGATGATTATCGTTT
GAAGGTGGATGATATGCTCTTCTACATTTCGCGTCACAAGTTTCCACCCA
TCCGCCCCTCGGAGCTGCCGCCAGTGACGGCAGAAGCGGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1156:10..300+

>mRNA_P-littoralis_Contig1156.1.1 ID=mRNA_P-littoralis_Contig1156.1.1|Name=mRNA_P-littoralis_Contig1156.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig1156:10..300+ (Pylaiella littoralis U1_48)
AAGGAAAAGAAGCGCTCAAGATGCGTGCACACGTTGATCGTCGCAATCTT
CACGGGCGTCTTGGGGCGGGGTTCGACCGTTGCGAGGAGCGGGACGACGG
CTGATGCAGATGATGCTTCTGGAAGTGCCTCGTCGGGTGGACCTGTGTTG
CCCCGTACTCCGCAGTTGCTCGCCAAGCGTTCCCCCGATGATTATCGTTT
GAAGGTGGATGATATGCTCTTCTACATTTCGCGTCACAAGTTTCCACCCA
TCCGCCCCTCGGAGCTGCCGCCAGTGACGGCAGAAGCGGGT
back to top