mRNA_P-littoralis_Contig6.44.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.44.3
Unique NamemRNA_P-littoralis_Contig6.44.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: D7FU31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 2.800e-128
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 3 
Query:  216 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVE 803
            +AKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHT VSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVD LYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVE
Sbjct:   13 SAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVE 208
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK)

HSP 1 Score: 232 bits (592), Expect = 2.810e-69
Identity = 124/203 (61.08%), Postives = 150/203 (73.89%), Query Frame = 3 
Query:  210 ELAAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK----KPTRKQVAKTRFVKAGGGVEA 806
            E ++KA+GS+LRVHFKHMREVAH IKGMKL+KAK +L+DVL++K+AV FT FTGG+G HAQGKL  A                       PG+KCRWPQKAT+IVLDL+KNAE+NAE K LD++ L + H+Q NRAPKQRRRTYRAHGRINPYMSSPAHIEL+L+E+   V KG+E +    K +RKQ A+ R V  GGGV A
Sbjct:   11 EKSSKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKLRKA-----------------------PGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRR-VTVGGGVSA 189
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: W7TUF4_9STRA (60s ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA)

HSP 1 Score: 228 bits (580), Expect = 1.300e-67
Identity = 121/194 (62.37%), Postives = 139/194 (71.65%), Query Frame = 3 
Query:  216 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGG 797
            AAKARGS+LRVHFKH+REV+H I G ++ KAK +L+DVL+YKRAVPFT F GG+GRHAQGKL                          PGS+C WPQKAT+IVLD++ NAESNAE K +D D LYIVH Q NRAPKQRRRTYRAHGRINPYMSSPAH+E+IL+EK V VKK     K TRKQ A+ R    GGG
Sbjct:   14 AAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSV-----------------------PGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRV---GGG 181
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.740e-66
Identity = 123/201 (61.19%), Postives = 143/201 (71.14%), Query Frame = 3 
Query:  210 ELAAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGVEA 806
            + AAKARGS+LRVHFKH REV+H IKGM LSKAK +L  VL+YK+AVPFT FTGG GRHAQGKL  A                       PG KC+WPQKAT+I+LDLVKNAE+NAE K LD D LY+ H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK   V+K D+ K  K +RK+ A+ R  K+GGGV A
Sbjct:   12 QRAAKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKLRNA-----------------------PGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRL-KSGGGVPA 188
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA)

HSP 1 Score: 218 bits (555), Expect = 7.360e-64
Identity = 119/199 (59.80%), Postives = 140/199 (70.35%), Query Frame = 3 
Query:  216 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGVEA 806
            +AKARGS+LRVHFKH REV   I+GMKLSKAK +L+DVLEYK+ VPFT FTGGVGRHAQ K                          +PGSK RWPQKA++IVLDL+ NAE+NAE K LD D LY+ H QCNRAP  RRRTYRAHGRIN YMS PAH+E+IL+E++  V + DE  P K +RK+ A+ R  K GGGVEA
Sbjct:   14 SAKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAK-----------------------NMKAPGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRL-KQGGGVEA 188
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA)

HSP 1 Score: 218 bits (555), Expect = 7.600e-64
Identity = 122/199 (61.31%), Postives = 139/199 (69.85%), Query Frame = 3 
Query:  216 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGVEA 806
            +AKARG +LRVH+KH REV H IKG  L+KAK +L DVLE K AVPFT +TGG GRHAQGKL  A                       PG KCRWPQKATRI+LDLVKNAE+NAE K LDV+ LYI H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK+  V K +EPK  K +RK+ A  R  K+GGGV A
Sbjct:   14 SAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEMKAAVPFTKYTGGPGRHAQGKLLNA-----------------------PGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRL-KSGGGVAA 188
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A3R7JUX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX4_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.540e-63
Identity = 122/202 (60.40%), Postives = 140/202 (69.31%), Query Frame = 3 
Query:  210 ELAAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKP---TRKQVAKTRFVKAGGGVEA 806
            + AAKARGS+LRVHFKH REV+H IKGM L+KAK +LQ V EYK+AVPFT FTGG GRHAQGKL  A                        G KC+WPQKAT+I+LDL+KNAE+NAE K LD D LY+ H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK   V K  E  K    +RK+ A+ R  K+GGGVEA
Sbjct:   12 QRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKLRGAA-----------------------GDKCKWPQKATKIILDLLKNAEANAEVKGLDTDLLYVSHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEVKTAKVSRKRQAQLRL-KSGGGVEA 189
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC)

HSP 1 Score: 216 bits (550), Expect = 3.970e-63
Identity = 119/197 (60.41%), Postives = 139/197 (70.56%), Query Frame = 3 
Query:  216 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGV 800
            +AK+RGS+LRVHFKH REV H IKG+ + KAK +L+ VLE K AVPFT FTGGVGRHAQGK                       T  +PG KCRWPQKAT+I+LDLVKNAE+NAE K LD D LYI H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK+  V K ++  P K +RK+ A+ R  K+GGGV
Sbjct:   14 SAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGK-----------------------TLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRL-KSGGGV 186
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A7S2FZJ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZJ5_9STRA)

HSP 1 Score: 216 bits (550), Expect = 9.550e-63
Identity = 118/196 (60.20%), Postives = 141/196 (71.94%), Query Frame = 3 
Query:  219 AKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKP---TRKQVAKTRFVKAGGG 797
            +KARGS+LRVHFKH RE+ H IKGM LS+AK +L+DVL+ K+AVPFT FTGG+GRHAQ      K +                   +PGSK RWPQKA++I+LDL+KNAE+NAE K LDVD L +VH QCNRA +QRRRTYRAHGRINPYMS PAHIEL+L   +  VKK DE KK    TRKQ A+ R +K+GGG
Sbjct:   43 SKARGSHLRVHFKHCREITHTIKGMSLSRAKQFLEDVLQMKQAVPFTKFTGGIGRHAQ-----LKQFK------------------APGSKGRWPQKASKIILDLLKNAEANAEFKGLDVDDLEVVHAQCNRAQQQRRRTYRAHGRINPYMSHPAHIELVLENPKNPVKKEDEDKKVPRLTRKQQAQLR-IKSGGG 214
[Close]
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Match: A0A836C7U9_9STRA (Ribosomal protein L22/L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.210e-62
Identity = 119/199 (59.80%), Postives = 137/199 (68.84%), Query Frame = 3 
Query:  216 AAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRF--VKAGGGVEA 806
            A+KARG+ LR HFKH+REVAH I+G    +A  +L+DVL++KRAV FT FTGGVGRHAQGKL  A                       PG K RWPQKAT++VL LVKNAESNA +K LDVD L I H+  N AP+QRRRTYRAHGRIN YMS+P H ELIL+EK VQV K  E  K +RKQVA  RF  VK GGG+EA
Sbjct:   14 ASKARGAYLRCHFKHLREVAHNIRGKSCVEAVRFLEDVLKFKRAVTFTKFTGGVGRHAQGKLVNA-----------------------PGDKVRWPQKATKVVLGLVKNAESNAVTKGLDVDKLVITHIMANHAPQQRRRTYRAHGRINAYMSTPGHFELILAEKAVQVPKAAEAPKLSRKQVAAARFKSVKVGGGLEA 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.44.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU31_ECTSI2.800e-12898.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1UCU8_HETAK2.810e-6961.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TUF4_9STRA1.300e-6762.3760s ribosomal protein l17-2 n=2 Tax=Monodopsidacea... [more]
A0A5D6XKD7_9STRA6.740e-6661.19Uncharacterized protein n=25 Tax=Oomycota TaxID=47... [more]
A0A7S1TQM1_9STRA7.360e-6459.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A485L8A8_9STRA7.600e-6461.31Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A3R7JUX4_9STRA1.540e-6360.40Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A067CFI1_SAPPC3.970e-6360.4150S ribosomal protein L22 n=4 Tax=Saprolegniaceae ... [more]
A0A7S2FZJ5_9STRA9.550e-6360.20Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836C7U9_9STRA2.210e-6259.80Ribosomal protein L22/L17 n=1 Tax=Tribonema minus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:160813..166534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU31
Preferred nameRPL17
PFAMsRibosomal_L22
Model size1914
Max annot lvl2759|Eukaryota
KEGG rclassRC00031,RC00042,RC00773
KEGG koko:K00015,ko:K00474,ko:K02880,ko:K06479,ko:K08267
KEGG ReactionR00717,R01388,R03451
KEGG Pathwayko00310,ko00630,ko01100,ko01110,ko01120,ko03010,ko04150,ko04650,map00310,map00630,map01100,map01110,map01120,map03010,map04150,map04650
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007154,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030684,GO:0030687,GO:0031667,GO:0031668,GO:0031669,GO:0031672,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042594,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045787,GO:0045931,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090068,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:1990928,GO:2000045
Exons7
Evalue1.41e-125
EggNOG OGsCOG0091@1|root,KOG3353@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L22/L17, eukaryotic/archaeal
Ec32 orthologEc-27_001230.1
EC1.1.1.26,1.14.11.8
Descriptionstructural constituent of ribosome
Cds size549
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko00537,ko01000,ko03011,ko04090,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.44.3prot_P-littoralis_Contig6.44.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 161290..165429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791233.2183437-UTR-P-littoralis_Contig6:160812..1610281680791233.2183437-UTR-P-littoralis_Contig6:160812..161028Pylaiella littoralis U1_48UTRP-littoralis_Contig6 160813..161028 +
1680791233.229691-UTR-P-littoralis_Contig6:161245..1612891680791233.229691-UTR-P-littoralis_Contig6:161245..161289Pylaiella littoralis U1_48UTRP-littoralis_Contig6 161246..161289 +
1680791233.3094454-UTR-P-littoralis_Contig6:165429..1665341680791233.3094454-UTR-P-littoralis_Contig6:165429..166534Pylaiella littoralis U1_48UTRP-littoralis_Contig6 165430..166534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791233.2389603-CDS-P-littoralis_Contig6:161289..1613521680791233.2389603-CDS-P-littoralis_Contig6:161289..161352Pylaiella littoralis U1_48CDSP-littoralis_Contig6 161290..161352 +
1680791233.2486336-CDS-P-littoralis_Contig6:162043..1621631680791233.2486336-CDS-P-littoralis_Contig6:162043..162163Pylaiella littoralis U1_48CDSP-littoralis_Contig6 162044..162163 +
1680791233.2657259-CDS-P-littoralis_Contig6:162583..1627001680791233.2657259-CDS-P-littoralis_Contig6:162583..162700Pylaiella littoralis U1_48CDSP-littoralis_Contig6 162584..162700 +
1680791233.2743351-CDS-P-littoralis_Contig6:162961..1630641680791233.2743351-CDS-P-littoralis_Contig6:162961..163064Pylaiella littoralis U1_48CDSP-littoralis_Contig6 162962..163064 +
1680791233.283517-CDS-P-littoralis_Contig6:163845..1639011680791233.283517-CDS-P-littoralis_Contig6:163845..163901Pylaiella littoralis U1_48CDSP-littoralis_Contig6 163846..163901 +
1680791233.2948122-CDS-P-littoralis_Contig6:165339..1654291680791233.2948122-CDS-P-littoralis_Contig6:165339..165429Pylaiella littoralis U1_48CDSP-littoralis_Contig6 165340..165429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.44.3

>prot_P-littoralis_Contig6.44.3 ID=prot_P-littoralis_Contig6.44.3|Name=mRNA_P-littoralis_Contig6.44.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIA
KDYMGDPSSKTVPGNKHKHTTVSPGSKCRWPQKATRIVLDLVKNAESNAE
SKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEK
EVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEA*
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mRNA from alignment at P-littoralis_Contig6:160813..166534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.44.3 ID=mRNA_P-littoralis_Contig6.44.3|Name=mRNA_P-littoralis_Contig6.44.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5722bp|location=Sequence derived from alignment at P-littoralis_Contig6:160813..166534+ (Pylaiella littoralis U1_48)
GGAAGGGAGGAGATGACTTGCGTTGTTACGCCCTTCGGTCTGTATTGGGG
CCTTTTTCTGAACCATGGTCGGGTACAGCAGTTTCATTTGTCGCAACTTC
TCCCGGTACAGCAGTAGTCGCGCACGAGGGCGTGAACGACTGGCGCCCCA
GTTCCTGCCGCTGTGCGCACACCGATTGAAGGCATCGGGGGTGTGCATAC
GGTTTGCGAGAGCTTGGTGAGGCAGCAGGAGCGTTTGTTTTCGCGGATTC
GGGCCTTCCGTGTGACTGCTTTTGCCCCAGACAGCGTATTCAACATAAGA
GCCAACCAACGTTATCTTGAAGAATTTTCTCACATGTCGCCCCTCGGAAA
TCTGACGAGATCCTCCGCTCCCCCTTGTCCCGCGGATTGCTGCACATTAC
TGCGTGCGTGAATGCGATGTTTTTCGCCTTCAGCCGCAAAGGCCCGCGGG
TCTAACCTGCGGGTGCACTTCAAGCACATGCGCGAAGTGGCTCACCTTAT
CAAGGGCATGAAGCTGTCCAAGGCAAAGGTGTACCTGCAGGTGAGTCAAC
CGTCTCCTGGAATTGTGTAGGGTGGAATAGACTGGGCCGATTTGTTTTTG
ATGCGGATACAGACGTGCGACTGTATGATACCCGTGTAATTTGTATCATA
CAGGAACGATTAATATTTGCCCCAAGCAGAGCGTGATCAACGAAACACAT
TGGTGCGTGTGTTCTTAGAGCACGAAGGTGTATTCTCCAAGCGAACATGT
GTGCGTGCGGCAAACTGTCACGAAAGAGTTTGCAAAGTTTGCGTCACACG
CTTGTTGATGAGTAGTGCGTACAGGGGTTTGTTTCTCGAGATCATCAGTC
GTCTTTTCCATTAGCTAGCGTCCCTTGCTTGCTGCCCTCCGAACGAGCAC
AGCCGTGGGGACTCGTCTGTGTGGCGTGCTGTCACATGTCGAGCACAGGT
CGTTCCTGCGCTGCAGTGCATAGAAGAGTAAGAGAGTATTTTGTCATTCC
AACACGAAGTGAGAGTGAAAGCGTGATGACGCGATTATTTGTTGGCTTTC
CTGTACTCGCCGACGGTTGCTTGTACACCTTTGTCGCGGTTGTTGTGCAT
TGCTGTGGCACTACATGATTCCCCTCGTGTTTTCTCCCGTGGAAAAGTTC
TGTTCCTCTCGTCATTTGGGTTTGTTGTGCGGCGTACCGTCGTACGCCAT
CTTATTTCTTGTCGCTGGTCGTGTTACTCAGGATGTCCTTGAGTACAAGC
GCGCGGTGCCTTTCACCATGTTCACCGGCGGCGTCGGCAGGCATGCCCAG
GGCAAGCTGCCCATCGCCAAGGACTACATGGGGGACCCGTCGAGCAAGAC
GGTAAGAATATAGCGTGGGTGGGCGGGCGGCGGGGCAGAAACGAACACAG
TATTGGCAACAAGAGAAAGAGTTAACTCAGGTTTGCGGAAAGGGAGCCGC
GAAGCCGTACCTTGCTGCAACTAAAGTCGAGATGATGCCAAGTGAGATCG
GACCTTATTCTCGATACTAGTACGCCCAATAGGCCGCCGGACTTTTTTCC
TGTAGAAGTGCTGCTGGTTGCTCTTAGGACACAGCTGCGTTCCAGTACAC
CTGCGTGCCTCGTCCTGCATGAGCTCACACCATTATTTTGTGGTGTGTTC
GGCTGTGCCAAAATCTAACCTCGATGTGCACGCCTCCCAAATAATTTGAG
GATAATAATGCCACGAAAATTGCACATGGTCTCGAGAGCTTTCCTTGATT
GAATTTTCTCATCGTTGACAGGTGCCAGGCAACAAGCACAAGCACACCAC
TGTGTCCCCCGGCAGCAAGTGCCGCTGGCCGCAGAAGGCGACACGGATCG
TTCTTGACCTGGTGAAGAACGCCGAGTCTAACGCGGAGGTGGGATGTGAA
GGAAGTCATTTCTCGTGTGATTTGACCTGGACAGCTAGGTCCATCCCCCC
TTTGTAGTGTTCGGCAGGTCCGGATATCTGTGTTTTCGGTATTCATGTTC
TCATTGCTGTGATGTCTTTGTGGGCTTGGTGCCTCGATAATCGTTTGTCC
GTCCGTCCGTTCGGCCGGCTTCCCTCTTCCTCTCCATCTCAAGTAGCAAC
AGAAAGGGTGACATAATTCCCCCGCCCCCTTCTCCCTATTGTCCCGCAGA
GCAAGGCATTGGATGTCGACGGTCTCTACATCGTGCACGTGCAGTGCAAC
CGCGCGCCCAAGCAGAGGCGCCGCACCTACAGGGCCCACGGTCGCATCAA
CCGTGAGTCTTTGTACCTCTGTTCTCAAGTTCGATTTTTTCTTGAAATCG
CTGGCATTCGCTGTTTCTCTTCTCCCCCCCCCCCTTCTCTCTTCGCAAGC
TTTTTTTGATTACAAGGTGCATCAGTACACAAGTATTCTTCGGCATGAAC
TTTTGTACCTTCCTATCGCTGTTTTGTAGGCTTGAGGGTGCGCTTGACCT
TCTTCAGTGCATGCTGTGTTGTGGGTTGGAAACAGGGTTGTGGCTCCATT
TGAACCCGTTTTGACCTCACGTAGGCTAAACCACATGCACGTGAGCATTA
CACTGTGACTTACTCGTTTTGGAGTTTCGTTTGTATCTGAAGAGTGCCCA
TACTTTTTTATCTCCCTAGGAATATTCTACGCTATCAATATTTCTAGCGT
GGATTCCTGGGGAGTTGAATCCCAAAAACCTTCAGCTGTATGTAGTAGAG
CGTCTTGTCCAACTCGCATTTCGCACAAGCTTCTTGATGATTGAGCGCAT
TCCAGAGGTCCTGTTGGCATTCCTTGATTCTAATGGCTTCCGGGTCGTAC
GAAGTAAGTTGGAGGTGCGGTTTCGACGTGCCGTTTTCGTCTCGTGTGCG
ACGTGAAAGCGATATGCCGTGCGATGCGGTGCCGGAATGCCCACACGGCA
TACATGGATGTTTATCCTCGATGAATCGGAATGGCGCATGCGCTGACCCC
CACCCATCCCCTTCCCCTCCTCTTTCTTGACACTTGTGATCCTCGTGATT
CTCATCGGCTGGCTCCAATCGTGTTTTGTTCAGCCTACATGTCCAGCCCC
GCACACATCGAGCTCATCCTCTCAGAGAAGGAGGTCCAGGTAAAGCATAA
TGAAGTACAGATAAAAAAAACTGATTTTCGACTTGCTTCTTGTCTGAACA
ATTGCTTCATGGTGTTCATAGAGGTACTGGACATAAAACGTACATACCAG
ACAAGAACAGATAATTAAACCTGATTGTTACACTTGGTTCACGTCTGAAC
AACTTTGTTCTATGGTGCTCATGGGGTGTCGTGTCGATGCACTGTGTCAC
GGTATCTACTAGTTCGAAGTGCACGATATTTCTCGGGGTAATCGCTGGCC
TTATTTTTTGTTCGTTCTGTCCTTATGAGAAAATGTCTCTGTAGGCCGTC
CACGGACCGTTCGAAAACGTTAATGCCCATCCGGATGAAGAATTCGATTG
CACCCACCAAATTGAGTCCTTGTTGACTACCGTAATCATGCGTAGGTTCG
CACCCATCGGAAGGTTGGCACCCATCGGAGAGATAGCACCGGGGTGCGAT
AAAAAACACAACGTAGAAACATTTAATCGTGTTTTCACACCCCCATCGGA
GAGATCGCACCCGGGTGCGATCTATCCGACATCAATAGAAATTTGAGGGC
CACCGCACCCGATGAGATATCACCAGTGCGCCACTCCTTTCAAACGTAAC
TTTACCAACGCATGGTAGGTCAAGTCGATTTGGGTAGCTTTGAGTTATTC
AATTTGTGTGCTCTCAACCAAGCACACAGCAAACACCATCTGGTACATGC
CGCCTACCGTTACACATCATAAATAACAGAACCAGCTCCTGCTACGATAT
TTCAATACCTTGTGCAACCGAGGCAGACACGAACGACAGAGGAAGTCGAG
TGGTTCAACATAAAGCGAACAGCAGATCCACAGTGTACGTGACATTTCAG
CAAGAAACACTCCGGAGCATCGTTCTCCGTCCCATTGCAACACGCCGCAA
CCAAACTCGCTTCGACCCCACAACCAACCCCAACGCCATGTTGATACGCA
CCAGACTCCGATACCCTTATGCATTCCAGCCAGCGACAATGGTACCTACG
GTCAAGGCGAAAACACCTGTATTGTACTGATCTACGGTATTTTCACGTAC
CGGTTTTGTAGCGATGTTTCACGGCTCAATTTCTTCCTCTACTCCCCCCC
CCCCCCCACCACCCAAGAACTCCACATCGCTGTCATCTTCCAGCAGCTCC
ACATCGCTGTAGGGTTTCGATTCAGCATCGCACCCCTCGGAGAGATCGCA
CCGGGGGTGCGCCAAAACAGAAGAACGGCATGATTTAATCGTGTTTCCGC
ACCCCCATCGGAAGGTTGGCACCCATCGGAGAGATAGCACCTGGGTGCGA
TAAGAAACACAACGTAGAAACATTTAAAGACGCGTTCGCACCCGGTGCGA
ACCTACGCATGATTACGGTAATGTAACTTCTTTTTCGGCTTTTATTTTTC
TCCCCGTATTTTCCTGTCGCGCTGCAGGTCAAGAAGGGCGACGAGCCCAA
GAAGCCTACCCGCAAGCAGGTGGCCAAGACCCGGTTCGTCAAGGCTGGGG
GAGGTGTTGAGGCTTAGAGTGTGACAGACTCAATTGACTTTTGTGCTTCT
GCCACGCGACTGGATGGCAAGGCACAAAGGGCCTTGCTTAACTGCAGGGA
AGAGCTTCCGCCGCAGCAGTCTTGCGCCACCGTCGTGCATCCCTCGAGGG
TTTTTGATGGTTTGGTTTGAGAGATTTTCTGCTGCATGCTGCTGCCGCTG
CTCGTCTTGCTAGAAAGCGCGCCCACGCTTGTCGTGGTGTGCCGATTGGT
GCCGGACGGTTTTAATAAAATATACAAATACAAAAATACAAAAAAATACA
ACCCGCGGCGCCATCGTCGGAGGTTGCAGTTTGTCTCAAGCTTCAATTGT
CAATGAGCTATTTGACGCGGTTCCCGTGCCATACTTCAATTGATGGTGGA
CGGCATGGTGTGCATGCACACCAACGGACGAAACGAACCGTCTATGGACA
GGCTGAAATTATCTGATATTTGTAGCAGCGTGTAACTGGTGATCCCGGAA
CGCACAGGCCTGGAGCGCGGGCACACAACCAGATGTTAAACCCCTGCAAT
ACATCTAGCCCGCGGTCCCAAAAGTGCAGATCCTGATCAGGAGTGAATCC
GAAAAGAGCTCAAGCAAGTTGAGGTGGTTTGAGCCGAATAATTTGCATTT
TCATGGACGCGGTGTTCTTTGACTAATTCAAGGAGCATGAAACGCGCAGA
TATCTGGTCGACAGCAACATCGCGTTCAGCATTTCCTCCGTCGCACTAGT
TGTCACCCGTGGCTGCAGACTCAGCAGCAACTCGCGGCGGTGGGACCGTC
TACTGTAGCGTGCTGCATGAAATGCAAGCGTGGTAGTCGAAAAACAGAAC
AAAACCTGGGGATTCCCCCGCCTTCGTACAAAGATCACGTCACCGTGGAG
CAAATTATCTAGTTTGAAGTTCGGCATTTTTTCAGGTGTTCGGTGGTGTA
TTCGAGATTTTGCCAGTGCACCACGAACTTATAACGGGGTTAACCATGAT
ACACATCGTTTTTTTTTCGATATCGTGTCGACGCCTGTCTGATCTTTGAT
GAAAGACAGCAAGTGGCACGAACAGACCGCGTTGTGGAAACGTGTGATCG
TGAAGCGGGACCCCGGCGTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:160813..166534+

>mRNA_P-littoralis_Contig6.44.3 ID=mRNA_P-littoralis_Contig6.44.3|Name=mRNA_P-littoralis_Contig6.44.3|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig6:160813..166534+ (Pylaiella littoralis U1_48)
ATGCGCGAAGTGGCTCACCTTATCAAGGGCATGAAGCTGTCCAAGGCAAA
GGTGTACCTGCAGGATGTCCTTGAGTACAAGCGCGCGGTGCCTTTCACCA
TGTTCACCGGCGGCGTCGGCAGGCATGCCCAGGGCAAGCTGCCCATCGCC
AAGGACTACATGGGGGACCCGTCGAGCAAGACGGTGCCAGGCAACAAGCA
CAAGCACACCACTGTGTCCCCCGGCAGCAAGTGCCGCTGGCCGCAGAAGG
CGACACGGATCGTTCTTGACCTGGTGAAGAACGCCGAGTCTAACGCGGAG
AGCAAGGCATTGGATGTCGACGGTCTCTACATCGTGCACGTGCAGTGCAA
CCGCGCGCCCAAGCAGAGGCGCCGCACCTACAGGGCCCACGGTCGCATCA
ACCCCTACATGTCCAGCCCCGCACACATCGAGCTCATCCTCTCAGAGAAG
GAGGTCCAGGTCAAGAAGGGCGACGAGCCCAAGAAGCCTACCCGCAAGCA
GGTGGCCAAGACCCGGTTCGTCAAGGCTGGGGGAGGTGTTGAGGCTTAG
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