mRNA_P-littoralis_Contig6.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.24.1
Unique NamemRNA_P-littoralis_Contig6.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: D7FU24_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU24_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 8.340e-55
Identity = 93/106 (87.74%), Postives = 100/106 (94.34%), Query Frame = 2 
Query:  137 MSLQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGSTSR 454
            MSLQALIEEKL+ EL PSH+EVINESGNHGA  GAESHFKVIVVS KF+GKPLLARHRMVNAALKEELV+DIHALSMTTRTPAQWAA+GG +VEP+PPCAGGSTSR
Sbjct:    1 MSLQALIEEKLTTELTPSHIEVINESGNHGAPLGAESHFKVIVVSTKFEGKPLLARHRMVNAALKEELVEDIHALSMTTRTPAQWAAEGGDKVEPTPPCAGGSTSR 106
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E)

HSP 1 Score: 125 bits (314), Expect = 8.640e-31
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 2 
Query:  143 LQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGS 445
            +Q  I EKL+  LGP HL+V+NESG H    G+E+HFKV+VVS +F+G  LLARHR+VN AL++ELV  +HALS+  RTP QW + GG RV+PSPPC GGS
Sbjct:   43 VQESIREKLTRALGPVHLDVVNESGMHAVPRGSETHFKVVVVSAQFEGVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGG-RVDPSPPCLGGS 142
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: A0A4R8IP74_9GAMM (BolA protein family transcriptional regulator n=1 Tax=Thiohalophilus thiocyanatoxydans TaxID=381308 RepID=A0A4R8IP74_9GAMM)

HSP 1 Score: 123 bits (308), Expect = 1.350e-30
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 2 
Query:  137 MSLQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGG 442
            MS+QA+IEEKLS ++ P+HL+VINES NH    G+ESHFKV++V+D FDGKPL+ARHRM+N  L EEL + IHAL++ T  P +W   G  +   SPPC GG
Sbjct:    1 MSMQAVIEEKLSQQIHPAHLQVINESDNHNVPPGSESHFKVVIVADSFDGKPLIARHRMINEVLAEELQNKIHALALHTYAPDEWQETG--QAPDSPPCHGG 100
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: G4ZLH3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZLH3_PHYSP)

HSP 1 Score: 121 bits (303), Expect = 1.630e-29
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:  155 IEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGSTSR*RTSPARQDETREKIM 502
            I EKL A   P+HL+VINES  H    GAE+HFKV+VV+++FDGKPLL RHRMVNA L+EEL D +HALS+ ++TP QW A+   +V+PSP C GG T+         DET+++ +
Sbjct:   16 IHEKLLAAFTPTHLDVINESHMHNVPRGAETHFKVVVVAEQFDGKPLLQRHRMVNAVLQEELNDGVHALSILSKTPKQWEANA--QVKPSPNCRGGMTT---------DETKKEFL 120
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: A0A6N1DY44_9GAMM (BolA family transcriptional regulator n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DY44_9GAMM)

HSP 1 Score: 118 bits (296), Expect = 7.450e-29
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 2 
Query:  137 MSLQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGG 442
            M +Q+ IE K+   L P HLEVINES NH    G+ESHFK++VVS+ F GKPL+ARHR +NA L +EL +D+HAL++ T TP +WAA GG     SPPC GG
Sbjct:    1 MRVQSAIERKVREALHPQHLEVINESDNHNVPPGSESHFKLVVVSEAFAGKPLVARHRQINAVLAQELREDVHALALHTLTPEEWAARGGAPT--SPPCLGG 100
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.440e-28
Identity = 70/131 (53.44%), Postives = 84/131 (64.12%), Query Frame = 2 
Query:   53 VAGRLAVCDQSSHRHT*YIILWCAECTDMSLQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGS 445
            VAG+   C+ +S R       +        +Q  IE +LS  L P HLEVINES  H +    ESHFKVIVVSD+F+GKPLLARHRMVNA   EE+   +HALS+  +TPAQW A+G K V PSPPC GGS
Sbjct:   40 VAGK---CNSASVRRRFRSAGFAMAAASGEMQETIEARLSEALSPVHLEVINESHMH-SGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHK-VAPSPPCMGGS 165
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: A0A225UUH1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UUH1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.350e-28
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 2 
Query:  155 IEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGST 448
            I EKL A   PSHL+VINES  H   +GAE+HFKV+VV+++FDGK LL RHRMVNA L++EL D +HALS+ ++TP QW A+   +++PSP C GG T
Sbjct:   12 IHEKLLAAFAPSHLDVINESHMHNVPKGAETHFKVVVVTEQFDGKALLQRHRMVNAVLQQELDDGVHALSILSKTPKQWEANA--QIKPSPSCRGGMT 107
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: W2PTW7_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2PTW7_PHYPN)

HSP 1 Score: 116 bits (291), Expect = 1.150e-27
Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:  155 IEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGSTSR*RTSPARQDETREKIM 502
            I EKL A   P+HL+VINES  H   +G+E+HFKV+VV+D+FDGKPL+ RHRMVNA L++EL D +HALS+ ++TP QW A+   +V+PSP C GG  +         DE++++ +
Sbjct:   26 IHEKLLAAFTPTHLDVINESHMHNVPKGSETHFKVVVVTDQFDGKPLIQRHRMVNAVLQQELDDGVHALSILSKTPKQWEANA--QVKPSPNCRGGMNA---------DESKKEFL 130
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: A0A4P7JS96_9GAMM (BolA/IbaG family iron-sulfur metabolism protein n=2 Tax=unclassified Thalassotalea TaxID=2614972 RepID=A0A4P7JS96_9GAMM)

HSP 1 Score: 115 bits (287), Expect = 1.540e-27
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  137 MSLQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGS 445
            M++QA+IE+KL+    P HL+VINES  H  +EG+ESHFKV+VVSDKFDG+ LLARHR VN+ L +EL + IHAL+M T T  QW     + V  SP C GGS
Sbjct:    1 MTVQAIIEKKLNEYFQPHHLQVINESYMHNVAEGSESHFKVVVVSDKFDGQRLLARHRQVNSVLSDELENAIHALAMHTYTLEQWQQMNAQAVPNSPDCLGGS 103
[Close]
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Match: A0A662WN87_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN87_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.780e-27
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 2 
Query:  155 IEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDGKPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCAGGST 448
            I EKL     P HL+VINES  H   +G+E+HFKV+VV+D+F+GKPL+ RHR+VNA L++EL + +HALS+ ++TPAQWA++    V+PSP C GG T
Sbjct:   15 IREKLQEAFAPQHLDVINESHMHSVPKGSETHFKVVVVTDEFEGKPLIQRHRLVNAVLQQELDEGVHALSIQSKTPAQWASNS--EVKPSPNCQGGMT 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU24_ECTSI8.340e-5587.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0014024C0E8.640e-3160.40bolA-like protein 1 n=1 Tax=Petromyzon marinus Tax... [more]
A0A4R8IP74_9GAMM1.350e-3057.84BolA protein family transcriptional regulator n=1 ... [more]
G4ZLH3_PHYSP1.630e-2953.45Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A6N1DY44_9GAMM7.450e-2956.86BolA family transcriptional regulator n=1 Tax=Ecto... [more]
D8LTH4_ECTSI1.440e-2853.44BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A225UUH1_9STRA5.350e-2858.16Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W2PTW7_PHYPN1.150e-2750.00Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A4P7JS96_9GAMM1.540e-2757.28BolA/IbaG family iron-sulfur metabolism protein n=... [more]
A0A662WN87_9STRA2.780e-2755.10Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:110001..112736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU24
Preferred namebola1
PFAMsBolA
Model size1313
Max annot lvl2759|Eukaryota
KEGG koko:K22066
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.26e-59
EggNOG OGsCOG0271@1|root,KOG2313@2759|Eukaryota
Descriptionprotein maturation by iron-sulfur cluster transfer
Cds size321
COG categoryT
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.7011435-UTR-P-littoralis_Contig6:110000..1101361680791232.7011435-UTR-P-littoralis_Contig6:110000..110136Pylaiella littoralis U1_48UTRP-littoralis_Contig6 110001..110136 +
1680791232.7428715-UTR-P-littoralis_Contig6:111880..1127361680791232.7428715-UTR-P-littoralis_Contig6:111880..112736Pylaiella littoralis U1_48UTRP-littoralis_Contig6 111881..112736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.7188156-CDS-P-littoralis_Contig6:110136..1102841680791232.7188156-CDS-P-littoralis_Contig6:110136..110284Pylaiella littoralis U1_48CDSP-littoralis_Contig6 110137..110284 +
1680791232.7296865-CDS-P-littoralis_Contig6:111707..1118801680791232.7296865-CDS-P-littoralis_Contig6:111707..111880Pylaiella littoralis U1_48CDSP-littoralis_Contig6 111708..111880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.24.1prot_P-littoralis_Contig6.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 110137..111880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.24.1

>prot_P-littoralis_Contig6.24.1 ID=prot_P-littoralis_Contig6.24.1|Name=mRNA_P-littoralis_Contig6.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MSLQALIEEKLSAELGPSHLEVINESGNHGASEGAESHFKVIVVSDKFDG
KPLLARHRMVNAALKEELVDDIHALSMTTRTPAQWAADGGKRVEPSPPCA
GGSTSR*
back to top

mRNA from alignment at P-littoralis_Contig6:110001..112736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.24.1 ID=mRNA_P-littoralis_Contig6.24.1|Name=mRNA_P-littoralis_Contig6.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2736bp|location=Sequence derived from alignment at P-littoralis_Contig6:110001..112736+ (Pylaiella littoralis U1_48)
AAGAAGAAAGAAAGACTATGTCATAGTCTTTGAGAAGAAAGAAGAAACAG
ACGTCGCGGGGCGGCTGGCTGTGTGTGACCAGTCATCACACAGACACACG
TAATATATTATTTTGTGGTGTGCAGAGTGCACGGACATGTCCCTCCAGGC
GTTGATCGAGGAAAAGCTGTCGGCAGAGTTGGGGCCATCGCACCTGGAAG
TTATCAACGAAAGCGGCAATCACGGCGCCAGTGAGGGAGCAGAGTCGCAC
TTCAAGGTCATCGTGGTGTCCGACAAGTTCGATGGTGGGTCGAATTGTTG
TGTTGGCCGTTTGGCACCACAGCCTACAGACTGCGCACGAATGTATGTGT
GTACGGCGTGGTTTATGCATACCGCAATTTTACTTTGTTGCGCGCGATAT
GTCAACGCCGTGTCAACTAAATGCTGCGGTCTGTATTTTGTACCAGGAAG
CCACACGCCACATAAGATACAACCCCCCCACGCAACCCCACGCCGATTTT
CACAACTGGACTTCTCCTCGGCAGGTAGCGACTGGCCCGAAATAGTATAG
TCGGTGTGAAGTCATGTGAACGATGGCTTTCCGTAAACGTAGACGTCGTT
CGACGTGGGCGCCCACCTCTTTGTGCAATGAATAATCGGCCCTTGAAATC
GGTCTCAGGGTCTCTCATCTCATCATGCGGTGAGATAACAGCGAGTCTCC
ACGGAGGGAGTGGGAGTCTCATCACAACACCAACATCACCCCATTTATGC
GGCACAGCCACGTTTGCTGTAATATCGGGGCATCTTGTGCGATCTACGGT
GAAAATGTTTTGATCCTTCCCCGGGGGGCACACAAGAGGTGCGCACCCAA
CGCAGAAACAGCATGCAATGCTTTATTGGCGCAGAGCAAAGCAGTAGCTT
TCGACACTTGACAGCAGCATAGAATCAGCAAGATACCCTCCGAAATCCCC
AAGACAAACCACGACACATCATTTGATGGAGAAGGTGGAGCAGAGACTCA
AAGCAGCAGCAGCGGGAGACATACAGAGTCGCACAGCGAGAGACAGCAGT
AGTACTGCTGTTTAGCGCAGCACACCGGGTCACCAACCTAGCATATCAAC
GACCACACCAACCTATCATATCCGCCAAGCACACCAACGTAGCATATTCG
CCAAGCAAAACCAACTTAGGGTAGATCCGCCAAGCAACACCAACCTAGCG
TATCCGCCAAGCGCACCAACCTTACATACCCGCCAATCACATCAACCGAG
AGGGATGAAGGAATTTGATATGTTCAGTATATGCCACAGTATTATAGATC
AAGTATGATAAGCACAATGACAAACAGCAGCAGCAGCAGCAGAAAAGGGT
GGGGGCGCATCTCTTAGATGCGCTCCCGGCGGGGGAAGGTCGATTTTTTT
GCGACCCACGGCAGTGAGTCTCCAGGGAGGGCGAGGGTCCCATCATAACG
TAAACATCACACGATTAATCGAGCACAGCTAGCGTTTCTGCTGTAGTGCC
AGAGCGGCCGAAAGAGGGGAGCAGGAATAGACTCGGATTAACAAAATAGA
TGGTACATTTATATGTAAATATGTACTTTGCAGAGAGTATACACATGGTT
CTGTCCCCACATCCCCCCGAGGATCAGTATCGATCACCGAATCACCTCAC
ACAAGACACCGCCCCCCCCGCCCCCCTGTCGTATTTTTTGCCCGTCGACG
AAAACAGGCAAGCCTCTGCTGGCCAGGCATCGCATGGTAAACGCCGCCCT
GAAAGAAGAGCTGGTCGATGACATCCATGCGTTGTCGATGACCACCAGAA
CGCCGGCGCAGTGGGCCGCGGATGGCGGGAAAAGGGTGGAGCCTTCCCCA
CCTTGCGCTGGAGGATCGACGTCACGATGACGCACCTCCCCAGCAAGACA
GGACGAGACGAGGGAAAAGATCATGTCTTGAAGGGGGGGTGGAGGATAAG
GAAAGGGTGGGAATCCTAGACAGTATGTTAATACCATAGGCGAAGGAGAC
GATTTAGGAATTCGGACGGGCTAGAACATTTAGTGTTGCTTGCTTGAGCA
TCTTCGACGTGTTGGAAACCCTCTCATTGCTGAGAAGACGCTTGCAAGAC
TACCGTATGTTCCGTCATAGGGACTCGATCAAGAATATTTGTTGAAAACC
TGACGGAAGCACGCTCAAGTTCTCCCCGCGAAATTGAGAGTGAGTGCGTA
GGGGGGTCGGCAAGGTCCAACTGTAGACCTGATACTGTATGGGGGGTGTA
GGTGCGGATGTTTCGTTTCAAAAAGGGGAAATCACGAAGAGGTTCCGACG
CTTTTGTCGATCAAATGCTCAAAACAAGGATAACATCACCCAGCAAATGG
CATGCCACACGCCCCCAGCGGCAAACAAGAACAAAAATGCACACGCCAGG
GTGGTGGCGAGTACATCGAGTCATAGAGTACCAAGCACACCGATTGCATA
GAGACTTGACGAGATGTGTAAGGAAAACTACAGGAGGAGTGAAACGATAA
TTTTTCGCACGAGCATGGACGTGTACGTGTTTCATGGGTGGACGTGATGA
GTTTGTGCGTTGCGGATCGTGTTGGTTTTGCCCTTCCCCCTGCGGTGGTG
TTACAACAATCCAGCGCTCCTGCACCAAACCCCCAGAGTCATCCCGTGGT
CATTAACCAGGTAAATATCGCGCTCGTGAAAGAAGGGAAAATAGTCAAGA
AGGCCATGCAAATAGACCAAAAAAGAAAAACGTAAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig6:110001..112736+

>mRNA_P-littoralis_Contig6.24.1 ID=mRNA_P-littoralis_Contig6.24.1|Name=mRNA_P-littoralis_Contig6.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig6:110001..112736+ (Pylaiella littoralis U1_48)
ATGTCCCTCCAGGCGTTGATCGAGGAAAAGCTGTCGGCAGAGTTGGGGCC
ATCGCACCTGGAAGTTATCAACGAAAGCGGCAATCACGGCGCCAGTGAGG
GAGCAGAGTCGCACTTCAAGGTCATCGTGGTGTCCGACAAGTTCGATGGC
AAGCCTCTGCTGGCCAGGCATCGCATGGTAAACGCCGCCCTGAAAGAAGA
GCTGGTCGATGACATCCATGCGTTGTCGATGACCACCAGAACGCCGGCGC
AGTGGGCCGCGGATGGCGGGAAAAGGGTGGAGCCTTCCCCACCTTGCGCT
GGAGGATCGACGTCACGATGA
back to top