mRNA_P-littoralis_Contig6.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.11.1
Unique NamemRNA_P-littoralis_Contig6.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: D7G8B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B1_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.120e-57
Identity = 103/138 (74.64%), Postives = 115/138 (83.33%), Query Frame = 1
Query:    7 RSEGGGG-----AVVSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKNVSA 405
            R EG GG     AVV+FG CFVGQSV+RRVSLRNTSLLPAKFGF+   A+VD+QPADGFGVLLPGE RW+E TFSPLSSVSH ST+SFRTSLGQ+T++RC G GV+PV+ LSHTVL LAP C GDTV ASIF  NVSA
Sbjct: 1048 RGEGEGGVGGSEAVVNFGPCFVGQSVTRRVSLRNTSLLPAKFGFIGNPAEVDLQPADGFGVLLPGEERWIEATFSPLSSVSHVSTVSFRTSLGQSTSVRCLGFGVDPVIKLSHTVLSLAPACSGDTVTASIFVNNVSA 1185          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: A0A7S1TZE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZE1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.540e-28
Identity = 63/127 (49.61%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   22 GGAVVSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKNVS 402
            G   + FG+ +V Q  S R+ + N S+LP KFGFV    ++++QPADGFGVLLPGE R + VTFSP ++VSH+ ++  RT+L     IR RG GV+  V +SHTVL L+P   GD    SIF KNV+
Sbjct:  775 GATELDFGRVYVTQGASLRMVVCNPSMLPQKFGFVDLPRELEVQPADGFGVLLPGEEREVTVTFSPYAAVSHELSLQLRTNLLVHKRIRVRGQGVDCPVDVSHTVLRLSPTYPGDACIESIFLKNVT 901          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: F0Y4M8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4M8_AURAN)

HSP 1 Score: 113 bits (282), Expect = 2.030e-26
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   40 FGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKNVSA 405
            +G C+V +++S  V L N S LP KFGFV+ +A+VD+QP DGFGVLLP E R ++V F P+S+V+ D  ++ RT++  T  I+ RG G+EP +  S TVL   P   GD V AS+   + SA
Sbjct: 1083 YGPCYVTEALSAPVVLTNESALPQKFGFVNLSAEVDVQPNDGFGVLLPRESRTVDVIFKPVSAVNVDLNLTMRTTMNNTYAIKVRGRGLEPALKFSFTVLKFPPASPGDRVVASVLVSHPSA 1204          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: A0A7S2APH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APH7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.410e-20
Identity = 48/124 (38.71%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   34 VSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKNVSA 405
            ++F  C++ +S  +R+ LRN S LP KFGF+    +VD++P DGFG LLP E + +++ F P  + +    +  +T++G+   +  RG GV+P +SLSH+V  + P   GD V A+I   N SA
Sbjct:  275 LNFENCYITESKVKRLVLRNESALPQKFGFIQLPPEVDVKPGDGFGSLLPHEAQTVDIHFRPSIAGATKLKLEMKTTMGKIYKVLVRGKGVDPPLSLSHSVADMVPAAPGDRVYAAIVVFNPSA 398          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: A0A0M0JCK6_9EUKA (Flagellar associated protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCK6_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 4.310e-20
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   40 FGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKNVS 402
            FG C +  S    +S+RN S LP +FGF+    ++D+QP D  G +LPGE     V FSP + ++H  T++ RTSL +T  ++C G G++P+++LS   L L P   GDT    +   N S
Sbjct:  929 FGSCPLNASRILELSIRNVSALPQRFGFLPLPKELDVQPGDAIGTILPGETLVRRVLFSPTAEITHKITLTCRTSLNRTYHLKCVGTGIQPILTLSSVKLSLPPTVEGDTSFGDVTLTNSS 1049          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: A0A7S3MKD6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MKD6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.280e-18
Identity = 42/123 (34.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   28 AVVSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKN 396
            +++ FG+ ++GQ  +R+++++NTS+LP K  FV    +  +QP DGF +LLP E +  E++F P SS++++  ++  TS   T TI+    GVEP +S S +V+ +     G+ V  ++  +N
Sbjct: 1012 SLLEFGKVYIGQKSTRKITIKNTSMLPQKTAFVRLRKEFLVQPNDGFALLLPNESQEFEISFGPQSSINYEVNVTLATSFNDTYTIKVIAEGVEPPLSFSSSVVQMRTTYPGERVLENVTVRN 1134          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: UPI00046258F4 (cilia- and flagella-associated protein 74-like n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI00046258F4)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-17
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   28 AVVSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKN 396
            A V FG C + ++V   V+L N S+LP +FGFV     V++QP DGFGVLLP E   ++V F P  +  +   ++ +T + +   + C+  GV P + LSH+ +      L D  +A++F  N
Sbjct:   25 AEVDFGYCSIFEAVQTTVTLTNKSILPQEFGFVGLQEFVEVQPNDGFGVLLPLESLSLDVIFKPKKAKEYSFHLTCKTEINRQFKLSCKAIGVHPPLELSHSFVQFPATALNDVSSATLFIIN 147          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: A0A7J7JLZ2_BUGNE (KIAA1751 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JLZ2_BUGNE)

HSP 1 Score: 87.8 bits (216), Expect = 1.490e-17
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   34 VSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKN 396
            + FG C + +SV + V L N S+LP +FGF+     VDIQP DGFG+LLP E   +++ FSP  + ++   +  ++ + +   IRC+G GV P + LS  V+H     L D    +I+  N
Sbjct:  107 IDFGHCTIYESVKQTVQLTNKSILPQEFGFMGLPEYVDIQPNDGFGLLLPEETIDLDIIFSPPKAKNYTFELCCKSLINREFKIRCKGVGVHPPLELSQQVVHFKATALNDYSLNNIYVIN 227          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: UPI001C4C4322 (cilia- and flagella-associated protein 74 isoform X1 n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4C4322)

HSP 1 Score: 87.8 bits (216), Expect = 1.570e-17
Identity = 41/121 (33.88%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   34 VSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKN 396
            V FG C + ++V   ++L N S+LP +FGFV     +++QP DGFG+LLP E   ++V F P  +  +   ++ +T + +   + C+G GV P + LSH+++  +   L D   A++F  N
Sbjct:  988 VDFGYCSIYEAVQTTITLTNKSILPQEFGFVGLQEFIEVQPNDGFGILLPLETLSLDVLFKPKKAKEYSFHLTCKTEINRKFKLSCKGIGVHPPLELSHSLVQFSATALNDVSTATLFILN 1108          
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Match: UPI000529D555 (uncharacterized protein CFAP74 n=1 Tax=Chlamydotis macqueenii TaxID=187382 RepID=UPI000529D555)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-16
Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   28 AVVSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDIQPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGHGVEPVVSLSHTVLHLAPVCLGDTVAASIFAKN 396
            A ++FG C + ++V   V L N S+LP +FGFV     V+IQP DGFG+LLP E   +++ F    +  +   ++ +T + +   + CR  GV P + LSH+++  A   L D   A+++  N
Sbjct:  981 AQINFGYCTIYEAVQANVMLTNKSILPQEFGFVGLPEFVEIQPNDGFGILLPLESLTLDIIFKANKAKEYSFELTCKTEINRQFKLSCRAVGVHPPLELSHSLVQFAATALNDVSTATLYVMN 1103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8B1_ECTSI2.120e-5774.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TZE1_9STRA2.540e-2849.61Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0Y4M8_AURAN2.030e-2646.72Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2APH7_9STRA1.410e-2038.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A0M0JCK6_9EUKA4.310e-2038.84Flagellar associated protein n=1 Tax=Chrysochromul... [more]
A0A7S3MKD6_9STRA3.280e-1834.15Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
UPI00046258F41.130e-1735.77cilia- and flagella-associated protein 74-like n=1... [more]
A0A7J7JLZ2_BUGNE1.490e-1737.19KIAA1751 n=1 Tax=Bugula neritina TaxID=10212 RepID... [more]
UPI001C4C43221.570e-1733.88cilia- and flagella-associated protein 74 isoform ... [more]
UPI000529D5551.380e-1634.15uncharacterized protein CFAP74 n=1 Tax=Chlamydotis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:53841..54879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8B1
Preferred nameKIAA1751
PFAMsASH,PapD-like
Model size409
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
Evalue3.48e-58
EggNOG OGs2CMB2@1|root,2QPUP@2759|Eukaryota
Descriptionaxoneme assembly
Cds size405
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.5776865-CDS-P-littoralis_Contig6:53842..539601680791232.5776865-CDS-P-littoralis_Contig6:53842..53960Pylaiella littoralis U1_48CDSP-littoralis_Contig6 53843..53960 -
1680791232.5959692-CDS-P-littoralis_Contig6:54310..544561680791232.5959692-CDS-P-littoralis_Contig6:54310..54456Pylaiella littoralis U1_48CDSP-littoralis_Contig6 54311..54456 -
1680791232.6079218-CDS-P-littoralis_Contig6:54738..548791680791232.6079218-CDS-P-littoralis_Contig6:54738..54879Pylaiella littoralis U1_48CDSP-littoralis_Contig6 54739..54879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.11.1prot_P-littoralis_Contig6.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 53843..54879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.11.1

>prot_P-littoralis_Contig6.11.1 ID=prot_P-littoralis_Contig6.11.1|Name=mRNA_P-littoralis_Contig6.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
ISRSEGGGGAVVSFGQCFVGQSVSRRVSLRNTSLLPAKFGFVSKAAQVDI
QPADGFGVLLPGEVRWMEVTFSPLSSVSHDSTMSFRTSLGQTTTIRCRGH
GVEPVVSLSHTVLHLAPVCLGDTVAASIFAKNVSA
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mRNA from alignment at P-littoralis_Contig6:53841..54879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.11.1 ID=mRNA_P-littoralis_Contig6.11.1|Name=mRNA_P-littoralis_Contig6.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1039bp|location=Sequence derived from alignment at P-littoralis_Contig6:53841..54879- (Pylaiella littoralis U1_48)
ATAAGCCGAAGCGAGGGTGGCGGTGGGGCTGTCGTGAGCTTTGGGCAGTG CTTCGTAGGGCAGAGCGTGTCGCGCAGAGTGTCGCTGAGGAATACAAGCC TGCTTCCGGCCAAGTTCGGCTTCGTCAGCAAGGCAGCTCAGGCATGAAAA AATAGATGAAACGATGGGGGGACAGTCTGTACTGGTATCCGCCTAGTACG GGATACCCAGTGGAACGGCTCTAGCACGACACAGATATTTCTCAGGCAAA AAGAAATTCCAGCCAGGACAATACTGATACTTCGCAAGGAGGTCCAATTT TCGATGAGAGCATTTTTCTCACGAGGTGTCCTATGCTGCACAACACTGAT GTCGCACGGGATGACCTTTTGTTTTAATCCCAGCCTACGTATCTCGGGCA TGCGCATCGCATGAATGAAACAGGTGGATATCCAGCCGGCTGACGGCTTC GGGGTGCTCCTGCCGGGAGAGGTGCGCTGGATGGAGGTGACCTTTAGCCC CCTGTCCTCGGTCTCACACGACTCCACCATGTCCTTCCGGACGTCCCTGG GTCAAACCACGACCATACGGTAAGATTCTCAGTCAGAAAATGCGGCAAAC AAACCAGCGTCAGATATCGAATGAAGTGGCTGGTTTGGTTGGGTTTAGTC TGGTTTGGTTTGGTTTGGTTTGGTTTGATTTGGTTTGGTTTGGTTTGGTT GTTTGGTTCCTGCATCAAGCTGGGGGTCAGCTTCAGCCAAGGTGTTTCCC AGCTTTCCCCGCTGCTAGGATAGAACGTCTGTGTGCGAGACTCGCCTCCC CGTACCTGACTTTCTTACCTGAGTGCACATTTGCGAGTGAAACATCCTCG ATGTGTTGTAGGCCCTAGAGGGGTTCACGTTCGTGGCACGCACTGCCTCC GTCTTTCTTCTGAATCAAGGTGCCGCGGACACGGAGTCGAACCGGTGGTC AGCCTCAGCCACACGGTCCTCCACCTCGCACCGGTCTGCTTGGGAGACAC GGTAGCGGCCAGCATCTTTGCGAAGAACGTCTCCGCCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:53841..54879-

>mRNA_P-littoralis_Contig6.11.1 ID=mRNA_P-littoralis_Contig6.11.1|Name=mRNA_P-littoralis_Contig6.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig6:53841..54879- (Pylaiella littoralis U1_48)
ATAAGCCGAAGCGAGGGTGGCGGTGGGGCTGTCGTGAGCTTTGGGCAGTG
CTTCGTAGGGCAGAGCGTGTCGCGCAGAGTGTCGCTGAGGAATACAAGCC
TGCTTCCGGCCAAGTTCGGCTTCGTCAGCAAGGCAGCTCAGGTGGATATC
CAGCCGGCTGACGGCTTCGGGGTGCTCCTGCCGGGAGAGGTGCGCTGGAT
GGAGGTGACCTTTAGCCCCCTGTCCTCGGTCTCACACGACTCCACCATGT
CCTTCCGGACGTCCCTGGGTCAAACCACGACCATACGGTGCCGCGGACAC
GGAGTCGAACCGGTGGTCAGCCTCAGCCACACGGTCCTCCACCTCGCACC
GGTCTGCTTGGGAGACACGGTAGCGGCCAGCATCTTTGCGAAGAACGTCT
CCGCC
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