mRNA_P-littoralis_Contig6.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.9.1
Unique NamemRNA_P-littoralis_Contig6.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.9.1 vs. uniprot
Match: A0A6H5JND8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND8_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.770e-42
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    4 KSSPGSFEVELSAQANERGHFKVTPDKGTVSPGATAELSCVFEPPPXXPRLPGPAGGKGGTLEVGHWYTTTALVHLRGGYRPPGSSEVLTVSIQLEGFITA 306
            KSS GSFE+ELSA A E+G FKVTP+KG + PG+TA++SC FEPPPXX  LPGPAGGKGGT E   WY TTA VHLRGGYRPPGSSEV TVS+QLEGFITA
Sbjct:  194 KSSAGSFEMELSADAREKG-FKVTPEKGNIPPGSTADISCAFEPPPXXXSLPGPAGGKGGTPE---WYKTTAFVHLRGGYRPPGSSEVHTVSVQLEGFITA 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JND8_9PHAE1.770e-4276.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:44937..46414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009035965.1
Preferred nameKIAA1751
PFAMsASH,PapD-like
Model size309
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
Evalue8.36e-12
EggNOG OGs2CMB2@1|root,2QPUP@2759|Eukaryota
Descriptionaxoneme assembly
Cds size309
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.4563036-CDS-P-littoralis_Contig6:44936..450531680791232.4563036-CDS-P-littoralis_Contig6:44936..45053Pylaiella littoralis U1_48CDSP-littoralis_Contig6 44937..45053 -
1680791232.4703193-CDS-P-littoralis_Contig6:45763..459281680791232.4703193-CDS-P-littoralis_Contig6:45763..45928Pylaiella littoralis U1_48CDSP-littoralis_Contig6 45764..45928 -
1680791232.4818122-CDS-P-littoralis_Contig6:46387..464141680791232.4818122-CDS-P-littoralis_Contig6:46387..46414Pylaiella littoralis U1_48CDSP-littoralis_Contig6 46388..46414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.9.1prot_P-littoralis_Contig6.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 44937..46414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.9.1

>prot_P-littoralis_Contig6.9.1 ID=prot_P-littoralis_Contig6.9.1|Name=mRNA_P-littoralis_Contig6.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
KKSSPGSFEVELSAQANERGHFKVTPDKGTVSPGATAELSCVFEPPPPPP
RLPGPAGGKGGTLEVGHWYTTTALVHLRGGYRPPGSSEVLTVSIQLEGFI
TA*
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mRNA from alignment at P-littoralis_Contig6:44937..46414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.9.1 ID=mRNA_P-littoralis_Contig6.9.1|Name=mRNA_P-littoralis_Contig6.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1478bp|location=Sequence derived from alignment at P-littoralis_Contig6:44937..46414- (Pylaiella littoralis U1_48)
AAGAAATCGAGCCCAGGATCGTTCGAGGTTAGTGTAGGACTACGGTAAAA
GTGAAGGTTCTTCAGCAAGTACTCTTTTGTGTAACGCGGCTGAGCACGGC
TGAAGGGGGTAACTCTGTCGACATGCAAGGTTCGTGGCGGCCACATCAAA
TTATGGCTCGACCCACGCGCACCTCTGCCTGACAACAGGAAACGTGGGTA
GCAAAAGCTGTTGTGAAGAGGGTTCCCTGCCACAAAACAAACAATTCATA
ATTAATTATTTTTTATCCCAACAGACCAATAACAACTTATGTATACCAGG
TTGGTTCTAAGTTACACCTCACCGCGGCAAGCACGACAGGGGAAATACAG
GTCCGCACGACCGAATCTTCACAACACTTTCGCAACGAAACGACTTCCTG
TACGTCGAGCTTCTTCCCCCTGAATCACCCGTTCATTATTCACTATTCCC
TGATCTGCTGCTTGGTCGTGGACCCCAACAAACCAGGTGGAGCTAAGCGC
ACAGGCAAATGAAAGGGGCCACTTCAAGGTAACGCCGGACAAAGGCACCG
TCTCCCCCGGAGCTACGGCCGAGCTATCGTGCGTGTTCGAACCGCCGCCG
CCCCCGCCACGGCTGCCCGGCCCGGCCGGTGGCAAAGGGGGGACCCTGGA
GGTGCGCCGTAGAGCGTTGCCCAACTTTTTACATCTTTTCACGCGTTTTT
GCGTTCGCGTTTGTTTCTTGATAATGGCGTATCATATTAATTACCCCCCC
GTTTTTTGAAGTCCTTAAAAGGACGAAAGGTGTGGCTTCTAAGAAATTCA
CGTGGGCGAGAGCGGGCGGTATTATGCGTTTCTCTTTTCTCCGCGTTCCA
GCCACCGTACTCGCTTCTTCCTGCCCTCGCGACACTACTTGTAGAAAGTA
AACACATACATGCCAAGATTTTGCATGCGGGCAGTTGTGGCTGGGCACTG
CGGCAGGGGAGGGGCAATCCCTTGGTGAAAGCCCGGTGAGTGTGACCTGC
GTGGTATGTAGAGAGTACTGATAGTTTCATAGGATGCCCCCCGAACTCAT
TCGCCGTTGCACGAAGGGTGCGTGTCAAGGCATTTGCAACGACAACGCCT
CTTCCGCCGCCTTGCGATCCGCCGGTTATGTTGTGTTGTAGATCGCGCGT
TCCTCCCTACATACGTGATGTATCGTCGTCCACCATTTGGAACACGCTTT
GCGTGCCTTCGCTTACGATCACGGGCTACGGTTGTAGGTTGTGGCGACAG
ACTCATGTGAAACCAACAACGCAACGACAACACTACACTGGCAACGACAA
CGAGCATCCGGCCCCCACCTCCAATCCACCGCCCGATATCTATCTCGCCA
CGGAAAATCAGGTTGGACACTGGTACACGACCACAGCGCTGGTGCACCTT
CGTGGGGGGTACCGACCACCCGGGTCGAGCGAGGTCCTCACCGTCAGCAT
CCAGCTGGAGGGTTTCATAACCGCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:44937..46414-

>mRNA_P-littoralis_Contig6.9.1 ID=mRNA_P-littoralis_Contig6.9.1|Name=mRNA_P-littoralis_Contig6.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig6:44937..46414- (Pylaiella littoralis U1_48)
AAGAAATCGAGCCCAGGATCGTTCGAGGTGGAGCTAAGCGCACAGGCAAA
TGAAAGGGGCCACTTCAAGGTAACGCCGGACAAAGGCACCGTCTCCCCCG
GAGCTACGGCCGAGCTATCGTGCGTGTTCGAACCGCCGCCGCCCCCGCCA
CGGCTGCCCGGCCCGGCCGGTGGCAAAGGGGGGACCCTGGAGGTTGGACA
CTGGTACACGACCACAGCGCTGGTGCACCTTCGTGGGGGGTACCGACCAC
CCGGGTCGAGCGAGGTCCTCACCGTCAGCATCCAGCTGGAGGGTTTCATA
ACCGCGTAG
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