mRNA_P-littoralis_Contig6.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.67.1
Unique NamemRNA_P-littoralis_Contig6.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:278429..278980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size554
Hectar predicted targeting categorysignal peptide
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.0496542-CDS-P-littoralis_Contig6:278428..2787401680791232.0496542-CDS-P-littoralis_Contig6:278428..278740Pylaiella littoralis U1_48CDSP-littoralis_Contig6 278429..278740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.065153-UTR-P-littoralis_Contig6:278740..2789801680791232.065153-UTR-P-littoralis_Contig6:278740..278980Pylaiella littoralis U1_48UTRP-littoralis_Contig6 278741..278980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.67.1prot_P-littoralis_Contig6.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 278429..278740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.67.1

>prot_P-littoralis_Contig6.67.1 ID=prot_P-littoralis_Contig6.67.1|Name=mRNA_P-littoralis_Contig6.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MVDLCFSVLLRKFLSAFLIWLHEAAELLQLSAGIYDTYNVCFFFVTRVET
SAVHNKPVSRYFNFSRYLYLSQIVSSVFFIPPPLPACAPTAYRGAPTLRF
AFPS
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mRNA from alignment at P-littoralis_Contig6:278429..278980-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.67.1 ID=mRNA_P-littoralis_Contig6.67.1|Name=mRNA_P-littoralis_Contig6.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig6:278429..278980- (Pylaiella littoralis U1_48)
CGACAAGGAGGAGGGGAAAGCCGGCGGCGGCGGCAACGGCAGCAGCGATG
AGGGGGGAGAGGTGCGCGCGATGAAATCGAGATCGAGACGACGAATTAAT
GAATGCGTCACGCACGAGTTCATGGTGACGCGATGCTGCTGCACGAAGGA
TTGATGTACTGCTGTGTACTGCTGCTGTGTAAATATTAATATTGTATCAT
ACTTCGAATCATAGTTATATCTGACGTTGGTGAGCGGTTGATGGTCGACC
TTTGTTTTTCTGTCTTGTTGAGAAAGTTCTTGTCAGCTTTCCTCATCTGG
TTGCATGAAGCTGCTGAACTGCTGCAGCTCTCGGCGGGTATCTATGACAC
GTACAACGTGTGTTTTTTTTTTGTAACGCGTGTTGAAACGAGTGCCGTAC
ACAACAAGCCTGTTTCTCGCTATTTTAATTTTTCCCGGTATTTGTATCTT
TCCCAAATAGTGTCCTCCGTCTTTTTTATCCCCCCCCCCCTCCCCGCCTG
CGCGCCTACCGCCTACCGCGGGGCCCCAACTCTCCGCTTCGCCTTTCCAT
CC
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:278429..278980-

>mRNA_P-littoralis_Contig6.67.1 ID=mRNA_P-littoralis_Contig6.67.1|Name=mRNA_P-littoralis_Contig6.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig6:278429..278980- (Pylaiella littoralis U1_48)
ATGGTCGACCTTTGTTTTTCTGTCTTGTTGAGAAAGTTCTTGTCAGCTTT
CCTCATCTGGTTGCATGAAGCTGCTGAACTGCTGCAGCTCTCGGCGGGTA
TCTATGACACGTACAACGTGTGTTTTTTTTTTGTAACGCGTGTTGAAACG
AGTGCCGTACACAACAAGCCTGTTTCTCGCTATTTTAATTTTTCCCGGTA
TTTGTATCTTTCCCAAATAGTGTCCTCCGTCTTTTTTATCCCCCCCCCCC
TCCCCGCCTGCGCGCCTACCGCCTACCGCGGGGCCCCAACTCTCCGCTTC
GCCTTTCCATCC
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