mRNA_P-littoralis_Contig6.316.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.316.1
Unique NamemRNA_P-littoralis_Contig6.316.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:1289328..1289828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791231.9618716-UTR-P-littoralis_Contig6:1289327..12893681680791231.9618716-UTR-P-littoralis_Contig6:1289327..1289368Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1289328..1289368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791231.9766111-CDS-P-littoralis_Contig6:1289368..12894101680791231.9766111-CDS-P-littoralis_Contig6:1289368..1289410Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1289369..1289410 -
1680791231.9901433-CDS-P-littoralis_Contig6:1289747..12898281680791231.9901433-CDS-P-littoralis_Contig6:1289747..1289828Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1289748..1289828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.316.1prot_P-littoralis_Contig6.316.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 1289369..1289828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.316.1

>prot_P-littoralis_Contig6.316.1 ID=prot_P-littoralis_Contig6.316.1|Name=mRNA_P-littoralis_Contig6.316.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=41bp
HLDISQHFVGEGTRAVPVGDPAKRKDDLTSMPTRRRPCSP*
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mRNA from alignment at P-littoralis_Contig6:1289328..1289828-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.316.1 ID=mRNA_P-littoralis_Contig6.316.1|Name=mRNA_P-littoralis_Contig6.316.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig6:1289328..1289828- (Pylaiella littoralis U1_48)
CACTTAGATATATCACAGCACTTCGTGGGAGAGGGGACGCGTGCGGTTCC
AGTAGGAGACCCGGCCAAACGCAAGGATGACCTGTTGAGAGAGGGTTTCA
CGGCGGGAGAGATAAGAGAGGCCCGTCTTGCATGGACTTTTCTGGACGAA
TCGCTGAAAAAGGAGGAAGACAGGGCGGTACTTCAGAGATGCAAGTCACC
AAGAGAAGCGTTCAACTACCTCGAGCAGTTCTACGACCCAGAGAGTGAGA
TAGCCACGCAGAGGCTGTACGAAAAGTTCCACCAATTCAAAATACCAGCT
CACGGGAACCCGGTTGCTGCATTCCATGAGCTAGAAGACCTCAACAACAG
GATGCAGGAGAAAGGCCTACCACGAGTTCCTGAACCCATGGTACACGCTC
GCTTCGTCTCCGCCTTGCCTGACGAGTATGCCCACACGAAGGAGACCCTG
CAGTCCATGAAGGATCGAACCAGGGAGGAGATCATTCGGAGGGTTGGAAC
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:1289328..1289828-

>mRNA_P-littoralis_Contig6.316.1 ID=mRNA_P-littoralis_Contig6.316.1|Name=mRNA_P-littoralis_Contig6.316.1|organism=Pylaiella littoralis U1_48|type=CDS|length=123bp|location=Sequence derived from alignment at P-littoralis_Contig6:1289328..1289828- (Pylaiella littoralis U1_48)
CACTTAGATATATCACAGCACTTCGTGGGAGAGGGGACGCGTGCGGTTCC
AGTAGGAGACCCGGCCAAACGCAAGGATGACCTGACGAGTATGCCCACAC
GAAGGAGACCCTGCAGTCCATGA
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