mRNA_P-littoralis_Contig1155.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1155.9.1
Unique NamemRNA_P-littoralis_Contig1155.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1155.9.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.250e-20
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 2 
Query:    2 GAVPYMIRAIRLVVAYSRKYRVKYARFVKWNRLMGVWAAITIGFVIRAYFFSLQRPEHYYSSDARDCFYFDD 217
            G +PY IR +RLVVAY++ YR K+ARFVKW  +M +WA  TIG V+RA FF   +P H+ SS+A +CFYFDD
Sbjct:   90 GIIPYFIRVVRLVVAYNQSYRAKFARFVKWTPMMRIWAGATIGLVLRAVFFFGSKPVHF-SSNAHECFYFDD 160
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BLAST of mRNA_P-littoralis_Contig1155.9.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 9.970e-20
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:   17 MIRAIRLVVAYSRKYRVKYARFVKWNRLMGVWAAITIGFVIRAYFFSLQRPEHYYSSDARDCFYFDDTVFVAIVLFVG 250
            MIRAIRLV+AY+RKYR+KYA+FVK  R +G WA I+IG  +RA  F    P HY SSD R+CFY+DD   V I L  G
Sbjct:    1 MIRAIRLVIAYNRKYRLKYAKFVKRKRALGFWAVISIGLTVRAGLFFGTDPAHY-SSDMRECFYWDDIFVVGIGLIFG 77
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BLAST of mRNA_P-littoralis_Contig1155.9.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.810e-19
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 2 
Query:    2 GAVPYMIRAIRLVVAYSRKYRVKYARFVKWNRLMGVWAAITIGFVIRAYFFSLQRPEHYYSSDARDCFYFDDTVFVAIVLFVG 250
               PY+IRA+RLVVAY+RKYR+KYARFVK N  +G WA   IG  IRA  F    P HY SSD R+CFY+DD + +  VL  G
Sbjct:    3 ATTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVGCIGLTIRAGIFFGTDPAHY-SSDMRECFYWDDIMLMGAVLLFG 84
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BLAST of mRNA_P-littoralis_Contig1155.9.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.020e-9
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:    2 GAVPYMIRAIRLVVAYSRKYRVKYARFVKWNRLMGVWAAITIGFVIRAYFFSLQRPEHY 178
               PY+IRA+RLVVAY+RK R+KYARFVK N  +G  A   IG  IRA  F    P HY
Sbjct:    3 ATTPYVIRAVRLVVAYNRKCRLKYARFVKRNHALGFGAVACIGLTIRAGIFFGTDPAHY 61
[Close]
BLAST of mRNA_P-littoralis_Contig1155.9.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.280e-8
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 2 
Query:    8 VPYMIRAIRLVVAYSRKYRVKYARFVKWNRLMGVWAAITIGFVIRAYFFSLQRPEHYYS 184
            +PY IRA+RLV+AY+RKYR+KYA+FVK     GV     I   IRA  F    P HY S
Sbjct:    1 MPYFIRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1155.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0L8_9PHAE4.250e-2058.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY9_ECTSI9.970e-2058.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R8_9PHAE1.810e-1956.63RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE83_9PHAE1.020e-955.93RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI4.280e-852.54RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1155contigP-littoralis_Contig1155:49888..50737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size257
Hectar predicted targeting categorysignal anchor
Exons3
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789476.1207018-UTR-P-littoralis_Contig1155:49887..499031680789476.1207018-UTR-P-littoralis_Contig1155:49887..49903Pylaiella littoralis U1_48UTRP-littoralis_Contig1155 49888..49903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789476.1319554-CDS-P-littoralis_Contig1155:49903..499151680789476.1319554-CDS-P-littoralis_Contig1155:49903..49915Pylaiella littoralis U1_48CDSP-littoralis_Contig1155 49904..49915 +
1680789476.148985-CDS-P-littoralis_Contig1155:50189..503471680789476.148985-CDS-P-littoralis_Contig1155:50189..50347Pylaiella littoralis U1_48CDSP-littoralis_Contig1155 50190..50347 +
1680789476.1598809-CDS-P-littoralis_Contig1155:50667..507371680789476.1598809-CDS-P-littoralis_Contig1155:50667..50737Pylaiella littoralis U1_48CDSP-littoralis_Contig1155 50668..50737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1155.9.1prot_P-littoralis_Contig1155.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1155 49904..50737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1155.9.1

>prot_P-littoralis_Contig1155.9.1 ID=prot_P-littoralis_Contig1155.9.1|Name=mRNA_P-littoralis_Contig1155.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MIRAIRLVVAYSRKYRVKYARFVKWNRLMGVWAAITIGFVIRAYFFSLQR
PEHYYSSDARDCFYFDDTVFVAIVLFVGVG
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mRNA from alignment at P-littoralis_Contig1155:49888..50737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1155.9.1 ID=mRNA_P-littoralis_Contig1155.9.1|Name=mRNA_P-littoralis_Contig1155.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=850bp|location=Sequence derived from alignment at P-littoralis_Contig1155:49888..50737+ (Pylaiella littoralis U1_48)
CGGCGCTGTGCCCTACATGATCCGCGCGGTGAGTGTTACTTATACTTGCT
TACGTCACATACGTCACTCGCTAGTCGGTGGAGTAGCAAAGCGACTGTTT
CAGTGTCTCGTATCCCCGTACATCACGCGATGCACGTCCAAGCTTGGTGA
ATCATTGACCGGCTCCCTCGTGATTGTTCTGGGGACAGCGTGCCAATAGA
GGGGTCGATCACGGGAAGTATCGCGAATGGGTCGGTCACACGACGAGCAA
TCCAATTCCCACTCAACAAGTTACATCATAACACCGATCGTTGCCGGTGC
AGATCCGCCTGGTGGTTGCGTACTCTAGAAAGTACCGAGTCAAGTACGCG
CGATTTGTCAAGTGGAACCGCCTGATGGGCGTTTGGGCTGCGATCACGAT
CGGATTCGTCATTCGAGCCTATTTCTTCTCTCTCCAAAGGCCTGAGCACT
ACTACTCCAGGTGATATTCATTGAAACAGACGAACGTTTGCAAACTAGTG
TGTGGATGTGTGTGATGTCTACACACTCAAAGCCGTTCGACCTCTATGCT
TCGTACCTTCTGGTGTCGTCCATACGACTGACGAATCTGATAGGACGGCG
TTCTCCGCGGTCGCAGTATACGTCACCGAAGTTGTTGCAAAGAAACAAAT
TCCTTCTTCCACCATTAATCATTTGTGAACCGTCTTGAAAATAGACCGCT
AGGAACGCAACGAGGAAACCCATATCCCATCAACGACCGATAAATTCGTT
CCGTTACCGCCTCGCGCTTCCTATATGCAGCGACGCACGCGACTGCTTTT
ACTTCGACGACACAGTCTTCGTGGCGATTGTCCTTTTTGTAGGCGTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1155:49888..50737+

>mRNA_P-littoralis_Contig1155.9.1 ID=mRNA_P-littoralis_Contig1155.9.1|Name=mRNA_P-littoralis_Contig1155.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig1155:49888..50737+ (Pylaiella littoralis U1_48)
ATGATCCGCGCGATCCGCCTGGTGGTTGCGTACTCTAGAAAGTACCGAGT
CAAGTACGCGCGATTTGTCAAGTGGAACCGCCTGATGGGCGTTTGGGCTG
CGATCACGATCGGATTCGTCATTCGAGCCTATTTCTTCTCTCTCCAAAGG
CCTGAGCACTACTACTCCAGCGACGCACGCGACTGCTTTTACTTCGACGA
CACAGTCTTCGTGGCGATTGTCCTTTTTGTAGGCGTGGGG
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