mRNA_P-littoralis_Contig597.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig597.25.1
Unique NamemRNA_P-littoralis_Contig597.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig597.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig597contigP-littoralis_Contig597:114920..115684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size187
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791227.1008732-UTR-P-littoralis_Contig597:114919..1149381680791227.1008732-UTR-P-littoralis_Contig597:114919..114938Pylaiella littoralis U1_48UTRP-littoralis_Contig597 114920..114938 -
1680791227.1558762-UTR-P-littoralis_Contig597:115666..1156841680791227.1558762-UTR-P-littoralis_Contig597:115666..115684Pylaiella littoralis U1_48UTRP-littoralis_Contig597 115667..115684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791227.1191006-CDS-P-littoralis_Contig597:114938..1150711680791227.1191006-CDS-P-littoralis_Contig597:114938..115071Pylaiella littoralis U1_48CDSP-littoralis_Contig597 114939..115071 -
1680791227.136739-CDS-P-littoralis_Contig597:115649..1156661680791227.136739-CDS-P-littoralis_Contig597:115649..115666Pylaiella littoralis U1_48CDSP-littoralis_Contig597 115650..115666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig597.25.1prot_P-littoralis_Contig597.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig597 114939..115666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig597.25.1

>prot_P-littoralis_Contig597.25.1 ID=prot_P-littoralis_Contig597.25.1|Name=mRNA_P-littoralis_Contig597.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MRARAWYVQVHTLVPRPRSSWRWKGSYFGGGCSLWVAYRYNELRSGNER*
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mRNA from alignment at P-littoralis_Contig597:114920..115684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig597.25.1 ID=mRNA_P-littoralis_Contig597.25.1|Name=mRNA_P-littoralis_Contig597.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig597:114920..115684- (Pylaiella littoralis U1_48)
CCTCCGGGGTCCTCGCGGATGCGGGCGAGGGCATGGTGGGAAATCTACGT
ATTACCTATTTTTTCTACGTACAGTATTTGTTTCAGAAGGGGTGTGTTCC
AAATATTTCGGTCTTGATTTTGTCCTTGGTTTGTGATGACAAGGAGTAGC
GGTATACGCACCCACGTGCCAGCTGCACTCTTGACGTTATCTGCAGTGAG
CCTCCACTGTTCTGCTCCATCTTAATGTGTGTACAGCATGACGTTTTTTC
GGCGTTCATGAGGATTCGCTTTCCTTCGCGAAAAACTTCCACCAGTACTA
CAGTATCATACATACATGCCTTCGCGTACGTACTGCTGTAGTATTGCTAT
ACTCCGTACATCAGTGTTTTTGCTGTAAACTCTGTGACCAAGGTTGTTGT
GACGAATACGAGGAGTGGGTGTCTACGCGTTACCGGTGAAGGTGGTGAAA
ACTATGAATAGGACGACGTGGACTTGTTGCTGTTTTTTTTTTTTGTAGTA
GCTGCGAGCGATGGACGACTCGCAGAAAACACCCCTTTCAGCTGGCCAAC
AATTATTTTCACTTGCAGCGCCTCCGGGCCAACCCTTGTTTTACTCTTTT
TTTTATTTGACAGGTATGTACAAGTGCATACGCTTGTGCCGCGGCCACGG
AGCAGCTGGCGATGGAAAGGGTCCTACTTTGGAGGAGGCTGTAGTCTTTG
GGTGGCATACAGATACAATGAGCTGAGGAGTGGCAACGAACGGTGAAGGG
CACGTAATGCCGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig597:114920..115684-

>mRNA_P-littoralis_Contig597.25.1 ID=mRNA_P-littoralis_Contig597.25.1|Name=mRNA_P-littoralis_Contig597.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig597:114920..115684- (Pylaiella littoralis U1_48)
ATGCGGGCGAGGGCATGGTATGTACAAGTGCATACGCTTGTGCCGCGGCC
ACGGAGCAGCTGGCGATGGAAAGGGTCCTACTTTGGAGGAGGCTGTAGTC
TTTGGGTGGCATACAGATACAATGAGCTGAGGAGTGGCAACGAACGGTGA
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