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Homology
BLAST of mRNA_P-littoralis_Contig596.29.1 vs. uniprot
Match: D7FYD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD9_ECTSI) HSP 1 Score: 119 bits (297), Expect = 1.980e-27 Identity = 135/203 (66.50%), Postives = 151/203 (74.38%), Query Frame = 1
Query: 172 MTDNYDLRSALAEALPAARPSLAAMRVMDDIAFKADPKNNDMKELFVGLDIAPEEAPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGPAGKKKNGIAAAAAIRGVGLARAAGVAGLDVEEAAEDERYLRQANLSKTAAKMSSXXXXXXXXXXXXGTSYEDRYAGKVVNRSKRKGRMMAMKQMY 780
M ++YDLRSALA+ALPAA P+ AA++ MDDI FKADPKNNDMKELFVGLDIA +E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + KN +AA +D L++ANLSKTAAKMS XXXXXXXXXXXX T+YE++YAGKVVNRSKRKGRM+AMKQMY
Sbjct: 1 MDNSYDLRSALADALPAAGPTRAAVKAMDDIGFKADPKNNDMKELFVGLDIAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------QAKNLLAAG-----------------------KDPASLKRANLSKTAAKMSXXXXXXXXXXXXXXTNYEEKYAGKVVNRSKRKGRMLAMKQMY 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1896 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_003660.1 |
| Cds size | 612 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791226.207366-UTR-P-littoralis_Contig596:96710..96881 | 1680791226.207366-UTR-P-littoralis_Contig596:96710..96881 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig596 96711..96881 + |
| 1680791226.2584481-UTR-P-littoralis_Contig596:103363..104476 | 1680791226.2584481-UTR-P-littoralis_Contig596:103363..104476 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig596 103364..104476 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791226.2192688-CDS-P-littoralis_Contig596:96881..97150 | 1680791226.2192688-CDS-P-littoralis_Contig596:96881..97150 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig596 96882..97150 + |
| 1680791226.2299142-CDS-P-littoralis_Contig596:102292..102473 | 1680791226.2299142-CDS-P-littoralis_Contig596:102292..102473 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig596 102293..102473 + |
| 1680791226.2424858-CDS-P-littoralis_Contig596:103201..103363 | 1680791226.2424858-CDS-P-littoralis_Contig596:103201..103363 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig596 103202..103363 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig596.29.1 >prot_P-littoralis_Contig596.29.1 ID=prot_P-littoralis_Contig596.29.1|Name=mRNA_P-littoralis_Contig596.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MTDNYDLRSALAEALPAARPSLAAMRVMDDIAFKADPKNNDMKELFVGLD IAPEEAPASAAAAAGGPGQAAAGPSAAQVLLDYRREKKAMEEAAQEEAER MLAAGEGPAGKKKNGIAAAAAIRGVGLARAAGVAGLDVEEAAEDERYLRQ ANLSKTAAKMSSKQKRRRKQGKEQGTSYEDRYAGKVVNRSKRKGRMMAMK QMY* back to topmRNA from alignment at P-littoralis_Contig596:96711..104476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig596.29.1 ID=mRNA_P-littoralis_Contig596.29.1|Name=mRNA_P-littoralis_Contig596.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7766bp|location=Sequence derived from alignment at P-littoralis_Contig596:96711..104476+ (Pylaiella littoralis U1_48) AGAGATTTCGTTCAGCACCCAGTTTGTGCAAAGCTAGCGGTCCAGCAGAA
CAGCAGGGGGGGCACCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGG
AACCCCAAATAAAACACACAAAATATCTCCACCTCATCACGCCGTTCGAT
TAGGCCGCAGCAACAAGCAGCATGACGGACAACTACGACCTCCGATCAGC
GCTCGCCGAAGCGCTCCCCGCTGCGAGACCCTCGCTCGCGGCCATGAGAG
TCATGGACGACATTGCTTTCAAGGCTGACCCGAAGAACAATGACATGAAA
GAGCTATTCGTCGGCCTTGATATCGCGCCAGAAGAAGCACCAGCCTCAGC
AGCAGCAGCAGCGGGTGGTCCGGGGCAGGCAGCGGCTGGGCCGTCGGCGG
CACAGGTGCTGCTGGACTACCGGCGAGAGAAGAAGGCAATGTGAGCGAAC
GTATCATGGTAGTGCGCCGAGATGAGATCAGGGGTGTGCCTTTCGGGCGG
TTTAGTGTTGTGGTTTCGTTGCGGGCCCCTACGGTAGCGAACTGATATCA
TCGGGCACGATGCTTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCT
GCACCCTGCAGTTCAAACTACAGGCTAGGCCCATGGACGGGGTCACACAG
GAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACA
TGCGTGAGGTTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTC
GGCGAAGCCGAATCTGCTTTTACTCACAGCATAGCCGCTTTCAAAGTAGC
AAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTG
GTTGACGAGGGGACCACTAGTCCGCCGGGGCGACGAGTGAACAGCAGTGG
TACAGCAGTACACTCATACCGTACAAGTCTAAGTACAAAAAAAAAAAGGG
CTGACCCCAAATAGCGGTACAGCAGCAGTATACCACCTGGTTTCCGCGCC
ACAAAGCGGTACACCAAAATACACCTGGGCATTTGAGCCCCGTTCGCGTC
GCTGATTGGCTGATTAAACCTCGTAACGCTTTTTGGTGGACCAGTCGGCG
GTACATCACATCATCTGGGCTTCTCAGGTCGGCTGTCACCGCTTTTTGGC
GCGACCCGTACCGCTTTCTGGCGGGATATTTCCCAGGCCATTCGTCCAAC
AGTCTTTTGACACTTCCAAATCACGCATCAACCAAGGAAGCCACGTCACC
TAATTACAGAGCCCCAGAGCCCTTTCGGATCGGTGAAGAACCTCTCACGT
CCTCCGCACGTTTTCTCTACACCCGACGCCTTCGGGACCTTGCAAGCTGA
TGCGTGCTTCTGCGGTGCTCTGCAAGAAGCTGGCAAGAAGGCCAGAACAA
TCACCACCACTGCTGCTGCTTTAAAACCAGAAGAAGAGAGCAGTGTTGTA
GTGGACCCATGTGAGAACGCGACTCACACCCCCGGCTCAAAACACACACA
CACACACGGTGCTGCTCCTTACCAGAATAAAGACCGACTACGGACAAAAC
TCGCGCAACCGCAAACAAACACCCTCATACAAGCACGATGACATGCACCT
GATTTGGCAGGCTCGGACACATACATACAAACATGGATGATATACCTTGC
TTTGCGTATTGCATGCGTTATTTGTTCCCAAATATCGTAACGGTTATTTT
TCAAGGCCTCGGACGGCAGTCACGGTGTGTGTATTTGTGCTGGGGTGTGA
GTCGCGTTCTCACATGGTCTACATACTACTTTGTCCTGTTTTTTTTACAG
CAGCAGCAGTGGTTGTTCCGGTCTTCCTGCCAGCTTTCTTGCAGAGCACC
GCAAAAACACAAAGCTCGTGTGTGATCTTCCTGCTGTGTGACCCCGGCTG
GTGCACCCACTTTTCATACCGAAAGGTGTAGACTGGTTCCCAGAATAAAT
GGGATTGACACACACAAACACGCATTGCAGCAAGCTGTAGAGGTCCCGAA
GGGGTCGGGTGCAGAGAAAATGCGCGGAGAGGTTCTTCACCGATTTAGGG
CCGGGGATTGTGGAACTGCGTGACGTGCTTCCTTGGTTGATGCGTGAGTT
GGAAGTGTCAAAGGCTGTTGGGCGAATGGCCTGGGAAATATCCCGCCAGA
AAGCGGTACGGGTCGCGCCAAAAAGCGGTGACAGCCGACCTGAGAAGCCC
AGATGTGGTGTACCGCCGACTGCTGGTGCCAAGAAGCGTTACGAGGTTTA
ATCAGCCAATCAGCGACGCGAACGGGGCTAAAATGCCCAGGTGTATTTTG
GTGTACCGCTTTGTGGCGCGGAAACCAGGCGGTATACCGCTTTTTGGCGT
CTGCCCAAAAAAAAAACTCCTGACCTTCCTCCTGTGCGACCGGCTCGTTC
ACCCACTTTACACTGAAAAGGGCAGACTGGTGCCCAGAATAATGCAGCTG
GAATGTGGGATGCAAACTCACTGAGAGAGAGAGAGAGAGAAGTTTGAAAG
GATCGTATTATATCATACTCCGGTACGAAATTAGAGACTTGGCTTCCAGG
TAGTTAAGGTCGCGTACGATACCGAGACACTGCTGCTCTAAAACACGTTT
GGTCGCATCAATTTAATACCTAGTACACACACACTTCGAAGTACTTGTAA
TGATCCTGTATGTATATGTATCATTTCATCATTTTTCATGCTTGGGCATA
GATTTCTCCGCCGGCAGCGGTTCTGTACTCGCGATTTTTTTCTGGAGGCA
CGCATGAGAGCCGTCGGTACATTACCGTGCAGGTCCGGGGGTCGCCCGGC
ATCGGTGGCCCGTGTCCTCGACGCCCGAAGTTTCCTGCATTTGCTCTTTT
TCGCGAGATCGCTTTCCGGGCAGAGATCGCCCGCCGAACCAAGTCGAAAC
CCACACAAAAATTGGCCCGCGGCTCGCTCTCGTCGTGTGCGTCAGCACTC
AACGGCCACCACATGCTCTTTTCAAATCTCTCACAGAAGCAAGCGGCACA
CCCATAAACGTCTCAATACGAACACCTCAAATACTCCGTATAACATACCC
GCACACCATATGCGACCACCTCACAACGCCCCGTCCCAAACAAGAGAGAA
ACTAAGAGACGGACGTTTGTGATGTGATGCAGACAATTTTGACAGAAGTA
CAGCAGTAGCATAAAATACCACGTGGAACCCAATCAAACGCACGCCCGAG
AAAAAATACCAGAGGATTTCACAATCAGAATTGGAATTTCTCAAGCTTGA
GAACTTCGATGTGGGAATTTGGCAATTTGAAATTCGCAAATCACATTCAT
CGCATAGTGCTGCGGGTGCAGGCGCGCCCCCTCCGTCACAGACCCTGCTT
CACAATCGCAGAAGTCCGCTCTAGCCTATTGGTCTCTCCACCGACAATCG
CCCATGCCTCGCCGCACCACCACCGCCAACACCACCGACACTGAGAGCAC
CAACACGAACCGGGTAGCTCTGCATTTTCCGCTGGTGGCGCGGCTCTTTG
TCCGTCTCCGCCTTCTACACCCCTGTCCTCGGGCGCGGCGGGCGGTGCGT
CCCACGACAACCTCGCCGACCGGGAAAGTGTTCCTCCTCACCGGGACCTT
TCCTTACTGGGCCCGCGTGATCAGTGCAACATCGCACTTTTCCTGAAAAA
AAAAACGCGCAAGAACAAGTCGGACTTTCCAGCATGAATATATCGATCCG
GTGATCCCGCGGTATCTTGCCGGAGTGATACCCTTTGCAACCTGCCAGGT
GCTGGTGTACATGTGATTCCTCAAAACTACGACTTATTGCAGCAGTACTC
TGTTGTGCCTTACTCTGTGTCCGGTCCTCCTACCGAGCCGTGTTGTCCTG
CTGTTTCTGAGCCGGAAAATGAAGAATGTCCACACATATCATAGTGCATT
GATGTCCGCGGTAAGGCACCCGCAGACTGGAACACGTGCTATCGAACACG
TACTATCGAACACGTGCTATCGTTGTCGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGCTGGTTGTTTGTGTTGTTTGTGGTGGTGGTGGTGGTGTT
GGTGTCCTTCTTGTTCGTATTATTGTTTCTGATATTAGCTCGCCGCCGAA
GTTTAGCCCTTTGTTGTGAACCAGCCACATCCTTCTGTGGTATACTTTGA
AGTATCGTACAAGGGTAAGAACATAGACCAGGCATAAACCATTCTCTGTG
ATGATAGGAACAAAAAACTCCTTCGAAGTACGAGGTAAAATCAACCAAAA
CAAAGAAAAAACAGGCAAAGATTCCTACGAAGACAAAGATATACCGCGAA
CTAGGGGATCTTCGTCGAGGCCAAAATGAAAACCGCACAGGAAAACAGAA
CTCTTAGATGGGAGTATATACACACTCGTACGGTATTTTCAGTTTTCCTG
GTAACACATCAATGCCTTCGTCCCTCTCCAGGTACTCTCGATACTTGTCA
AGTGAAATTGAAACTCGCGAGGAGATGACAGCGCGTGAAGGAGAAGGAAA
GGACGCCAAAAGAGACGAAAATGACGAAGGGGTTTAGCGATAAAGAGAGG
CGAGACAAAATCAAAGAAACGGGAGGGAGAGGAGGAATCGAAGAAAGAGA
AAAGTGCATCAAAGAGGGAAGACACCAAATAGATGGGTTCACGCGCAATC
AGTCGCAATCATGTCTCTCCACAAGGTCCTGCTCACGCTTGCTCTCCTTC
CGCATACGCATGCCTCCTGTGACTCGTATGTTTGATACCACAGCACCCTT
ACTACTTACGCCGCCCCCCAATTTAGTTCGTACATTTTTACCAGCAACAC
CACACTCGCTTCCGCAAGTTCTGCCCTTCATGTTTTTTCACGGCACCACC
GCCATACATAGCTTGGTTTGCTTTTTCTGCCTCACGTGTGTGTGTGTGTG
TGCTTTTTTATTTGTCTCCTATCTATCCTGGTCGCCAGCATACGCCTCTC
GGTGTATATAGGGCGCACCAGCAGGTGACACGCACAGCAGTTTCAACACA
GGAGTTTTTTTTTTCGAATTAAGGCAAGAACCGCAGCGGGAAGTGGAGAA
AAAAATAACTCCTACTGTATCTGTGACCCCGGTTGGTGTGTCTACCTACC
CGAAAGGTAATCGCGTGGCGTCCAATTACAGGGATGACAACACACACGCA
CGCACACACACGCACACACGCACACACGCACACACGCACACACAACTTTT
TTTAGCACTCTGGGTTTTTCGCGCTCTCCGTGCTTTACTTTTTATCGTAA
CGTTGTACAAACAATTGTATGATCCTAACGGAGCCCACGATTGTCAAGGA
ACAAGAGTAGGTGGTGGTTTCCTCCCCCTCTGCACCTACGACCTTCGAGA
AAGATGACGACGACTACACAATGACTGCAGTCATCGCGGAGGACGATGGT
GTACCACAGCAGCACTTGGCGCGCGTGGCGATTGCGACCACCACTCGGGG
GAATGGTTTGAGTAAACGATCATTAAAAGCTGTCGTCTGAAAAAAACGAG
TTGCAGCAGCATGATCCTCGCGTTTACGCAATGCATAATCATACGTTCTC
GCAAAACCACCCCTCCTGACACAACCGGACAGGGAGGAGGCTGCGCAAGA
GGAGGCCGAAAGGATGCTGGCGGCGGGCGAAGGTCCAGCAGGGAAGAAGA
AGAACGGCATCGCTGCTGCTGCTGCGATTAGAGGGGTCGGGCTGGCTCGG
GCGGCGGGAGTGGCAGGCCTGGACGTGGAGGAGGCGGCGGAAGACGAGCG
TTACTTGCGACAGGTGAGGCACAACACGTCTGCGTTTGGACACCGCCACC
CTCGCGTACCATACCAGTTAGCAATCGAGCAGGTTTGGAAAGGGCACGCG
TCGGGGAGAAAGAGGAACCCGCTGTGGGGCACTGTACCTTTTCGGTTTGT
TCCCGTCGCCGACTCGGCCCGGGATCGGTTACCACTGCTGCACGCGTACA
TGCAGCTTTCGCGATCAACATCTGACAATAAAAAATAGAGTCACGGCATG
AAAGGACAAGATGGATTGTATAACTTGCGCATTCCAAGTCAATCGACTCG
ACTTGTTGCCATCTTGACAAGTGTTTATTTGATCCCTCTCGCTGGCGTTC
CCTTGTTGGTTGTCACCCAACCGTGGTGTTCCGTGCTTTTTAGTAAGAAC
ACACACGTTCTAACGCAATTTCTCAGTGACTGAACAAAAAAAAAAGAGCG
GTGGACTCTAGTTGTCCCACCTACCTTCCCCCAGGAAGCTCCGTGCGGTA
GCGTTACGCAGAAGAAGTCGCAAGCGAGAAAACAACAGTTGGCTTTCTTC
TGTAGTTTGTGCAACGCCGCTGCTGTATATCATTGATGCGGGCTGGTGGT
TTTGGGGGGCTATTGCCCTTGCCCCTTCAGAACTGGCACAAACCGAGCAC
CACCCCAAATCTAACCCATGTGCTGTTGTTGTGCCTTCGCCGGGTGTGGG
GAATTGGCTGGACACGGGCATTGGCGCATTGGCGTGCGCAGGCGAACCTC
TCGAAGACGGCGGCGAAGATGAGCAGCAAGCAGAAGCGGAGACGCAAGCA
GGGCAAGGAGCAAGGCACCAGCTACGAAGACAGATACGCCGGCAAGGTCG
TGAACAGATCCAAGCGAAAGGGCAGGATGATGGCCATGAAGCAGATGTAT
TGATTTGTGTTGATTTGATTTGATCGGGTTTGGATAGATCCAATCGGAAG
GGCAGAGTGACGACCATGAAGCAGGTGTATTGGTTTGTTTGGTTTGATTG
GGTTGGGTCGGATTTGATGCGATTCGTCGTGTGCGTTTGTTTTGTATTTT
TGTATTTTTTTGTTTTTCGGGCTTGCCATCAGAAAGCCAAGCCGATATGC
TGATTACATTCAATGTTTGCGGTTTTGTTTTCGCATATAGGATTTGGTGT
AATGCGCGGTTGTCTCCAATCGACTGGGCTCGACGTGCAGATGTCAATCA
CACGTGGTACTGCGTGTTCAAGCACTTTTTTGGATTCAGTGCTGTTTTGG
TGTGACGTCGATGGGCCGAGTATTTGCGGCATTCGGGTTGATTTTAGCAC
TGCCCCACGAAACAGGCATGTTGTACGTGGGAAATCCGAGGTGCGAAACC
AGACTCTTATCGCCACACGCACCAAGTACCTGGTAGTCTATTTTGGTTTG
GGTTTTGCCGGAATTCGGGTGTCTGCTTGGAGGTGGGTGGGTTCGAATTG
TTGGTTCAGTCGATTTATGCGGGTTTACCTGGATCAATTTGGTAGGCGTG
CTGGCGTGGTGCTGCTATCGTATCATATTAGTTGGAATCGTTTGGCCGGG
CTTGTTGGTGGGTGGGTGAAGATTGGGTTTTAAGTTGGGTTTACGCTCAT
TTTGTTCATGCATTTGGGTGTCGATATGTTGTGTGATTTGACGAGACGGA
TTCATCCTTTTGTGTTGCAGGGAATTCGTTGTCGGTTTGTTGTATTGAGA
GCTGTTTGTGTCGAGCATGTGCGTGAATGTGTCGAGCACATCGTCGCTGT
GACTATACGTTTGTGCGTTCAGCAGTAAAAATCAGGAATCGAGAAAAATG
AGAAGACAAATTACACTCGTTTTAAAAGAAGAGTCAAGTGACACTCTTAT
GAAATTAGCTTGTGTCGTCGCACCATGTGTTGTGTTGAGGGCAGTACTCC
GCAAGCACCGCCGGTGCAAAAGTCAGTGCACCGTGGAACGCTTTGTCGTA
ACGGACTACCCGCTCGTCAATTTTATTCGGTTGCGCCCTGCAACTGCGTG
TGTGGGTGTCTGCGGC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig596:96711..104476+ >mRNA_P-littoralis_Contig596.29.1 ID=mRNA_P-littoralis_Contig596.29.1|Name=mRNA_P-littoralis_Contig596.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig596:96711..104476+ (Pylaiella littoralis U1_48) ATGACGGACAACTACGACCTCCGATCAGCGCTCGCCGAAGCGCTCCCCGC TGCGAGACCCTCGCTCGCGGCCATGAGAGTCATGGACGACATTGCTTTCA AGGCTGACCCGAAGAACAATGACATGAAAGAGCTATTCGTCGGCCTTGAT ATCGCGCCAGAAGAAGCACCAGCCTCAGCAGCAGCAGCAGCGGGTGGTCC GGGGCAGGCAGCGGCTGGGCCGTCGGCGGCACAGGTGCTGCTGGACTACC GGCGAGAGAAGAAGGCAATGGAGGAGGCTGCGCAAGAGGAGGCCGAAAGG ATGCTGGCGGCGGGCGAAGGTCCAGCAGGGAAGAAGAAGAACGGCATCGC TGCTGCTGCTGCGATTAGAGGGGTCGGGCTGGCTCGGGCGGCGGGAGTGG CAGGCCTGGACGTGGAGGAGGCGGCGGAAGACGAGCGTTACTTGCGACAG GCGAACCTCTCGAAGACGGCGGCGAAGATGAGCAGCAAGCAGAAGCGGAG ACGCAAGCAGGGCAAGGAGCAAGGCACCAGCTACGAAGACAGATACGCCG GCAAGGTCGTGAACAGATCCAAGCGAAAGGGCAGGATGATGGCCATGAAG CAGATGTATTGA back to top
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