mRNA_P-littoralis_Contig1154.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1154.3.1
Unique NamemRNA_P-littoralis_Contig1154.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1154.3.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 7.700e-58
Identity = 115/196 (58.67%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:    1 TGLVDIDALLRKVNILPPYVSKLELTPEEKSLPRKRRREALEAKCDKCIKVVNASKLIDLMGAIIRYPRAHYFELACALSFASGLGLPELVGSAVQFSPSCHGTHEVDIKLGGVEGHPKGTTCRVPLLCEYENFVEGVNKLRGMKETFNLTPAEVNHRYSKSANLYARKLLPDVCQGGHVFSDLRTLHGAVSHEVF 588
            TGL DID LLRKV +LPPYVS+LELTPEEKS+PR +RRE+LE KC + +  V+AS LID M +IIRY R +YFELA ALSF SG GL EL G+A  F P   G +E ++K+G        T  RV LLCEY++F+EG+ KLR MK+T  LT AE+N RYSKSAN+ ARKLLP       VF DL+ LH A+S+ VF
Sbjct: 1588 TGLADIDDLLRKVRLLPPYVSRLELTPEEKSIPRIKRRESLEVKCRRGL-TVHASDLIDTMESIIRYARPNYFELASALSFVSGRGLAELAGNA-DFKPGTRGPYEAEVKVG--------TVARVLLLCEYDHFIEGLKKLRSMKDTSCLTAAEINQRYSKSANIAARKLLP-TDGDRRVFGDLKVLHAAISYRVF 1772
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BLAST of mRNA_P-littoralis_Contig1154.3.1 vs. uniprot
Match: A0A6H5JTS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.450e-52
Identity = 108/184 (58.70%), Postives = 132/184 (71.74%), Query Frame = 1 
Query:    1 TGLVDIDALLRKVNILPPYVSKLELTPEEKSLPRKRRREALEAKCDKCIKVVNASKLIDLMGAIIRYPRAHYFELACALSFASGLGLPELVGSAVQFSPSCHGTHEVDIKLGGVEGHPKGTTCRVPLLCEYENFVEGVNKLRGMKETFNLTPAEVNHRYSKSANLYARKLLPDVCQGGHVFSDL 552
            TGL DID LLRKV +LPPYVS+LELTPEEKS+P+ +R+E+LE KC + +  V+AS LID M +IIRY R   FELACALSF SG GL EL G+   FSP   G  E ++K+G +         RV LLCEY++F+EG+ +LRGMK+T  LT AE+N RYSKSAN+ ARKLLP    G HVF DL
Sbjct: 1329 TGLADIDDLLRKVRLLPPYVSRLELTPEEKSMPKIKRQESLEVKCRRGL-TVHASDLIDTMESIIRYARPKCFELACALSFVSGRGLAELAGNT-NFSPGTCGPCESEVKMGALT--------RVLLLCEYDHFIEGLKRLRGMKDTSCLTAAEINQRYSKSANIAARKLLP-TDGGWHVFGDL 1501
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BLAST of mRNA_P-littoralis_Contig1154.3.1 vs. uniprot
Match: A0A6H5JMH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.430e-8
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 TGLVDIDALLRKVNILPPYVSKLELTPEEKSLPRKRRREAL 123
            TGL +ID LLRKV +LPPYVS+LELTPEEKSLPR +RRE+L
Sbjct: 1632 TGLAEIDDLLRKVRLLPPYVSRLELTPEEKSLPRIKRRESL 1672
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BLAST of mRNA_P-littoralis_Contig1154.3.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.420e-5
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 TGLVDIDALLRKVNILPPYVSKLELTPEEKSLPRKRRREAL 123
            T L DID LLRKV +LPPYVS+L++ PEEKS+PR +R+E+L
Sbjct:  903 TVLADIDDLLRKVRLLPPYVSRLKVAPEEKSIPRIKRQESL 943
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1154.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JCS9_9PHAE7.700e-5858.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS3_9PHAE2.450e-5258.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH4_9PHAE1.430e-878.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L909_9PHAE1.420e-565.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1154contigP-littoralis_Contig1154:13482..14069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size588
Hectar predicted targeting categoryother localisation
Exons1
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789475.5495899-CDS-P-littoralis_Contig1154:13481..140691680789475.5495899-CDS-P-littoralis_Contig1154:13481..14069Pylaiella littoralis U1_48CDSP-littoralis_Contig1154 13482..14069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1154.3.1prot_P-littoralis_Contig1154.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1154 13482..14069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1154.3.1

>prot_P-littoralis_Contig1154.3.1 ID=prot_P-littoralis_Contig1154.3.1|Name=mRNA_P-littoralis_Contig1154.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
TGLVDIDALLRKVNILPPYVSKLELTPEEKSLPRKRRREALEAKCDKCIK
VVNASKLIDLMGAIIRYPRAHYFELACALSFASGLGLPELVGSAVQFSPS
CHGTHEVDIKLGGVEGHPKGTTCRVPLLCEYENFVEGVNKLRGMKETFNL
TPAEVNHRYSKSANLYARKLLPDVCQGGHVFSDLRTLHGAVSHEVF
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mRNA from alignment at P-littoralis_Contig1154:13482..14069-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1154.3.1 ID=mRNA_P-littoralis_Contig1154.3.1|Name=mRNA_P-littoralis_Contig1154.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig1154:13482..14069- (Pylaiella littoralis U1_48)
ACTGGGCTTGTTGATATCGACGCGCTCCTACGGAAGGTAAATATACTTCC
ACCTTACGTTTCCAAGCTGGAACTCACACCGGAAGAAAAGAGCCTTCCAA
GGAAAAGACGCAGAGAGGCTTTGGAAGCGAAGTGCGACAAGTGTATCAAA
GTAGTGAACGCAAGCAAGCTCATCGATCTCATGGGAGCAATCATCAGATA
CCCCAGAGCACATTACTTCGAATTAGCGTGCGCTTTGTCGTTTGCTTCGG
GGTTGGGGCTGCCTGAGCTTGTTGGTAGTGCTGTTCAATTTTCGCCCAGT
TGTCATGGCACCCACGAAGTAGATATCAAGCTGGGTGGTGTTGAGGGACA
CCCGAAAGGAACCACCTGCCGGGTACCATTGTTATGCGAATACGAAAACT
TCGTAGAGGGAGTAAACAAATTACGTGGCATGAAGGAAACGTTCAATCTC
ACCCCTGCCGAGGTCAATCATCGATACAGTAAATCAGCAAATTTGTATGC
CAGAAAGCTGCTTCCGGATGTCTGCCAGGGCGGTCATGTATTCAGTGATT
TGAGGACCCTGCATGGGGCAGTTAGTCATGAAGTGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1154:13482..14069-

>mRNA_P-littoralis_Contig1154.3.1 ID=mRNA_P-littoralis_Contig1154.3.1|Name=mRNA_P-littoralis_Contig1154.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig1154:13482..14069- (Pylaiella littoralis U1_48)
ACTGGGCTTGTTGATATCGACGCGCTCCTACGGAAGGTAAATATACTTCC
ACCTTACGTTTCCAAGCTGGAACTCACACCGGAAGAAAAGAGCCTTCCAA
GGAAAAGACGCAGAGAGGCTTTGGAAGCGAAGTGCGACAAGTGTATCAAA
GTAGTGAACGCAAGCAAGCTCATCGATCTCATGGGAGCAATCATCAGATA
CCCCAGAGCACATTACTTCGAATTAGCGTGCGCTTTGTCGTTTGCTTCGG
GGTTGGGGCTGCCTGAGCTTGTTGGTAGTGCTGTTCAATTTTCGCCCAGT
TGTCATGGCACCCACGAAGTAGATATCAAGCTGGGTGGTGTTGAGGGACA
CCCGAAAGGAACCACCTGCCGGGTACCATTGTTATGCGAATACGAAAACT
TCGTAGAGGGAGTAAACAAATTACGTGGCATGAAGGAAACGTTCAATCTC
ACCCCTGCCGAGGTCAATCATCGATACAGTAAATCAGCAAATTTGTATGC
CAGAAAGCTGCTTCCGGATGTCTGCCAGGGCGGTCATGTATTCAGTGATT
TGAGGACCCTGCATGGGGCAGTTAGTCATGAAGTGTTC
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