mRNA_P-littoralis_Contig596.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig596.17.1
Unique NamemRNA_P-littoralis_Contig596.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.070e-37
Identity = 74/125 (59.20%), Postives = 92/125 (73.60%), Query Frame = 1 
Query:  211 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVAG 585
            PELQ  +E+   ++ G G QSI VTL  PQ GKR+LTAW W+ +SRF+P+INDKNVVCLVK  +G  C HL+KW+ S  + QRGSGTTGL KH+EKFHP   +  KEE GT+ ERK  I+AA+AG
Sbjct:   47 PELQSSSESRTMVNAGRG-QSISVTLMEPQYGKRRLTAWCWQVMSRFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSEGK-QRGSGTTGLTKHIEKFHPTTAQKIKEEEGTQAERKESIQAAIAG 169
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BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Match: A0A6H5JE87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE87_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.280e-32
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  211 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 579
            P LQ P E+ A+I  G GK +++VTL+ P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLKEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
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BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.400e-29
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  211 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 579
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
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BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.640e-29
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  211 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 579
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct: 1124 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 1244
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BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Match: A0A6H5JJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.780e-27
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  184 QPVADSDSHPELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTA-WVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLL-KWSSSTTQAQ-----RGSGTTGLAKHLEKFHPAVV 516
            +PVA+S   P LQ P ET A++  G GK ++QVTLE P EGKR LT+ W W F SRFSP IN KNVVC+ K  +G  C HL+ KW  + T A      +GSGT+G++KHLE  H   V
Sbjct:   35 EPVAES--VPVLQSPPETQASVDAGNGK-TVQVTLEEPVEGKRMLTSSWTWHFASRFSPPINGKNVVCMAKKADGTTCKHLIMKWEGAATAAVTGKRGKGSGTSGISKHLETAHKVEV 149
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BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.160e-18
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  346 RFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 579
            RF+P+INDKNVVCLVK  +G  C HL+KW+ S +  QRG+GT+ L+KH+ K HPA  K  ++E GT  +RK PIRAA+
Sbjct:  211 RFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSESNKQRGTGTSWLSKHIAKAHPATAKTRRDE-GTPADRKEPIRAAI 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig596.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE2.070e-3759.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE87_9PHAE5.280e-3250.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE2.400e-2951.22Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE2.640e-2951.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJD8_9PHAE7.780e-2751.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE1.160e-1856.41Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig596contigP-littoralis_Contig596:68189..69374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size662
Hectar predicted targeting categoryother localisation
Exons2
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791225.8535645-UTR-P-littoralis_Contig596:68188..682421680791225.8535645-UTR-P-littoralis_Contig596:68188..68242Pylaiella littoralis U1_48UTRP-littoralis_Contig596 68189..68242 +
1680791225.8981707-UTR-P-littoralis_Contig596:69345..693741680791225.8981707-UTR-P-littoralis_Contig596:69345..69374Pylaiella littoralis U1_48UTRP-littoralis_Contig596 69346..69374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791225.8633409-CDS-P-littoralis_Contig596:68242..687681680791225.8633409-CDS-P-littoralis_Contig596:68242..68768Pylaiella littoralis U1_48CDSP-littoralis_Contig596 68243..68768 +
1680791225.8842442-CDS-P-littoralis_Contig596:69292..693451680791225.8842442-CDS-P-littoralis_Contig596:69292..69345Pylaiella littoralis U1_48CDSP-littoralis_Contig596 69293..69345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig596.17.1prot_P-littoralis_Contig596.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig596 68243..69345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig596.17.1

>prot_P-littoralis_Contig596.17.1 ID=prot_P-littoralis_Contig596.17.1|Name=mRNA_P-littoralis_Contig596.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp
MSASDPSVSATPSGEEAASADSSTPAPGDASQDANESAVNTSDQPVADSD
SHPELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFS
PTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFH
PAVVKGAKEETGTKEERKAPIRAAVAGVNRRRRQEEHLSRHC*
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mRNA from alignment at P-littoralis_Contig596:68189..69374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig596.17.1 ID=mRNA_P-littoralis_Contig596.17.1|Name=mRNA_P-littoralis_Contig596.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-littoralis_Contig596:68189..69374+ (Pylaiella littoralis U1_48)
TGCGCCACACGCCACACCTGCCCAGCACGCAGAGTGCGCGTGGTCTGTCT
AGCAATGAGCGCTTCAGACCCTAGTGTTAGTGCTACTCCCAGTGGTGAAG
AGGCTGCGTCAGCCGATTCATCCACGCCAGCTCCGGGCGACGCATCGCAG
GATGCGAATGAGTCGGCGGTGAACACGAGCGATCAACCGGTGGCTGACAG
TGATAGCCACCCGGAGTTGCAACCACCAGCCGAGACTGTAGCCACGATCA
GTCCCGGCGGAGGCAAGCAGAGCATCCAGGTCACACTCGAGCCTCCTCAA
GAAGGGAAAAGGAAGTTGACGGCCTGGGTTTGGAGGTTTGTGAGTAGGTT
TTCCCCGACCATCAACGATAAGAACGTGGTTTGCTTGGTGAAGGGGCCTG
AGGGGAAGATCTGCGGCCATCTGCTGAAGTGGTCTTCATCAACCACGCAG
GCCCAAAGAGGGTCGGGAACGACTGGCTTAGCCAAGCACCTCGAAAAATT
TCACCCGGCCGTGGTCAAGGGTGCGAAGGAGGAGACAGGCACCAAGGAGG
AGAGGAAAGCACCAATTCGAGCGGCAGTTGGTGAGTCATATTACATTATT
TAAGTATAATATTTATTATTTATTATTTATCACTTCGTATTTATTATTTA
TTATGTATTGTATAGACTATTTACTACTCCGTATTCACTGTTTGTTTGTT
TTGTTTTCTATTTTCTATTTTTGCAACTGATTTTGGGCCGAAAAGACGGA
AAATGCTGTTGACTTGATTTTGTGATTTTGTATTGCCTTCCACAAAGCAA
CTGAAAATAATTATTAAAATTTACACATATTATTGTTGTTTCTATTGTCT
CCCCAAGAGAACACACATGTACGTATGTATGTACGAAGTGTGGTTTCTTG
TTTATGTCTATTGTCTCATTGTCTCCTACAAACGAAAAAATAATTTCATA
AATTAAGTATTTTTTATTTTTCTCCCCCAAACGAAAAAATAAAATAAAAA
ATAGTTGAATTAAATAAAAACTATATGAAACTTAAGATTAAAGCTATTTT
TTTTGTCTTTTTTGTTGTTTGTTTTTCTATTCTCTCTTGGTACCTTTACG
GCAGCGGGCGTGAATCGCCGGAGGCGTCAGGAGGAACACCTCAGTCGTCA
CTGCTAGAGTACATGTCACGGAAGATGGACAAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig596:68189..69374+

>mRNA_P-littoralis_Contig596.17.1 ID=mRNA_P-littoralis_Contig596.17.1|Name=mRNA_P-littoralis_Contig596.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig596:68189..69374+ (Pylaiella littoralis U1_48)
ATGAGCGCTTCAGACCCTAGTGTTAGTGCTACTCCCAGTGGTGAAGAGGC
TGCGTCAGCCGATTCATCCACGCCAGCTCCGGGCGACGCATCGCAGGATG
CGAATGAGTCGGCGGTGAACACGAGCGATCAACCGGTGGCTGACAGTGAT
AGCCACCCGGAGTTGCAACCACCAGCCGAGACTGTAGCCACGATCAGTCC
CGGCGGAGGCAAGCAGAGCATCCAGGTCACACTCGAGCCTCCTCAAGAAG
GGAAAAGGAAGTTGACGGCCTGGGTTTGGAGGTTTGTGAGTAGGTTTTCC
CCGACCATCAACGATAAGAACGTGGTTTGCTTGGTGAAGGGGCCTGAGGG
GAAGATCTGCGGCCATCTGCTGAAGTGGTCTTCATCAACCACGCAGGCCC
AAAGAGGGTCGGGAACGACTGGCTTAGCCAAGCACCTCGAAAAATTTCAC
CCGGCCGTGGTCAAGGGTGCGAAGGAGGAGACAGGCACCAAGGAGGAGAG
GAAAGCACCAATTCGAGCGGCAGTTGCGGGCGTGAATCGCCGGAGGCGTC
AGGAGGAACACCTCAGTCGTCACTGCTAG
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