prot_P-littoralis_Contig596.6.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig596.6.1
Unique Nameprot_P-littoralis_Contig596.6.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length467
Homology
BLAST of mRNA_P-littoralis_Contig596.6.1 vs. uniprot
Match: A0A6H5LEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEH4_9PHAE)

HSP 1 Score: 533 bits (1372), Expect = 5.680e-185
Identity = 313/473 (66.17%), Postives = 347/473 (73.36%), Query Frame = 0
Query:    1 MQDGDWGHDGLMAEGQEIIEEFDLNTGGFVGAVSSIEGTGQLVTGTRNDEYGWKPLPLGPGTGGATRAASAAAAPLENRLAVHTVRDTRGRVLGLGASPSQR--GGXXXXXXXXXXXXXXXXGWEPATEAWTPHEGAVTGIDVAGGVGY--LGGVAGIVTSGGDGRLRLFELAGGDDGDQRDDDRDSAASGSSRSPSLDLRGQVASHTGRATGVAATRRRAVTVGEDGVASLVDLQRLADGGXXXXXXXXXXAIIWAGAAKGALPLSAVTFQGESEEVFATVGCDPRSQLLVWDARADGSRPVLTATLGYLRDSAAPYLCVASQPFTPEVFACGVSTGELLLWDVRAGDVLHELQAQDKSCSGGGTWGVAFHPRRPRHLFSCSGTGVLTKWYLPPEG--HAPPAPTGPSFGGXXXXXXXXESW-AWRGARHLHALSSRSALVGVCYDEAADTVLAVSKHGHVVVAQGVPGLRL 466
            M  GD G  G   E QEII+E  LNTGG VGAV+S+EGTGQL+TGTRNDE GW  LP GPG    T AA+AAAA L NRL VHT+RDT GRVLGLG+S S R  G XXXXXXXX          E   EAW PHEGAVTG+DVAGG G+  LGGV+G+VTSGGDG LRLFEL  GDD D+ +D   S   G    PSL L GQV +H+ RATGVAATRRRAVTVGEDGVAS+VDLQRLAD             ++W G  KGA+PLS VTFQGESEEVFATVGC+PR QLLVWDAR DGSRPV+   LG +R S APYLCVASQPF PEVFACGVSTGE+++WDVR G  LHELQAQD++ + GG+WGV FHPR PRHLFSCSGTGVLTKWY+PPEG  H P A  G  +GG          W + RGARHL+ L SRS LVGVCYDE ADT+ AVSKHGHVVVA GV GLRL
Sbjct:    1 MDQGDRGRGG--PESQEIIQELFLNTGGLVGAVTSVEGTGQLITGTRNDESGWSILPPGPGRE-KTTAATAAAASLGNRLTVHTIRDTGGRVLGLGSSSSLRAAGXXXXXXXXXGDEDAVVGRLESVAEAWAPHEGAVTGVDVAGG-GFESLGGVSGVVTSGGDGCLRLFELTPGDDFDEDEDG--SPGDG----PSLGLVGQVPTHSDRATGVAATRRRAVTVGEDGVASVVDLQRLADDHGGSAGGGVGGGLVWTGRTKGAMPLSGVTFQGESEEVFATVGCNPRGQLLVWDARTDGSRPVVRGALGCIRGSEAPYLCVASQPFAPEVFACGVSTGEVIVWDVRTGVPLHELQAQDETSAAGGSWGVTFHPRSPRHLFSCSGTGVLTKWYMPPEGQAHEPAAVDGGEWGGG--------GWESLRGARHLYELPSRSGLVGVCYDETADTIAAVSKHGHVVVAHGVAGLRL 455          
BLAST of mRNA_P-littoralis_Contig596.6.1 vs. uniprot
Match: A0A836CFJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.020e-12
Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  256 AKGALPLSAVTFQGESE-EVFATVGCDPRSQLLVWDAR-ADGSRPVLTATLGYLRDSAAPYLCVASQPFTPEVFACGVSTGELLLWDVRAGDVLHELQAQDKSCSGGGTWGVAFHPRRPRHLFSCSGTGVLTKW 387
            ++GALPL+AV FQG SE  VFAT G  P SQL +WD R A G+ P  T    +    AA Y CV + P TPE F  G ++GE+++WD R       +   D          V  H R+ R  FS    G++  W
Sbjct:  123 SRGALPLTAVAFQGRSEGHVFATTGSAPGSQLCLWDLRVAQGAAP--TEVCAHASPGAA-YTCVMNCPLTPESFCAGATSGEVVIWDTRNPREPQIVVNHDSEVRA-----VVAHTRQQRG-FSADAEGLVLDW 247          
BLAST of mRNA_P-littoralis_Contig596.6.1 vs. uniprot
Match: A0A5D6XWA2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWA2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.570e-5
Identity = 34/106 (32.08%), Postives = 48/106 (45.28%), Query Frame = 0
Query:  282 PRSQLLVWDARADGSRPVLTATLGYLRDSAAPYLCVASQPFTPEVFACGVSTGELLLWDVRAGDVLHELQAQDKSCSGGGTWGVAFHPRRPRHLFSCSGTGVLTKW 387
            P SQL +WDA A+ S PVLTA+  +   S+A    V + P  PE+   G   G + LWD R  D     + + +         +  H   PR L+SC     +  W
Sbjct:  296 PGSQLRIWDATANRSYPVLTASDPH---SSAVLTSVETHPTRPELLLTGAEDGRVCLWDQRRLDAPFRTETKHQRA----VRALKLHSAAPRFLYSCGDDATVLSW 394          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig596.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LEH4_9PHAE5.680e-18566.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFJ3_9STRA1.020e-1239.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XWA2_9STRA4.570e-532.08Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 73..397
e-value: 4.7E-25
score: 90.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..416
NoneNo IPR availablePANTHERPTHR22652NUCLEOPORIN NUP43coord: 69..388
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 130..390

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig596contigP-littoralis_Contig596:29816..37078 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig596.6.1mRNA_P-littoralis_Contig596.6.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig596 29784..37802 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig596.6.1 ID=prot_P-littoralis_Contig596.6.1|Name=mRNA_P-littoralis_Contig596.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=467bp
MQDGDWGHDGLMAEGQEIIEEFDLNTGGFVGAVSSIEGTGQLVTGTRNDE
YGWKPLPLGPGTGGATRAASAAAAPLENRLAVHTVRDTRGRVLGLGASPS
QRGGDDDDDDDDGEAAGAGGGWEPATEAWTPHEGAVTGIDVAGGVGYLGG
VAGIVTSGGDGRLRLFELAGGDDGDQRDDDRDSAASGSSRSPSLDLRGQV
ASHTGRATGVAATRRRAVTVGEDGVASLVDLQRLADGGGGGGGGAGAAAI
IWAGAAKGALPLSAVTFQGESEEVFATVGCDPRSQLLVWDARADGSRPVL
TATLGYLRDSAAPYLCVASQPFTPEVFACGVSTGELLLWDVRAGDVLHEL
QAQDKSCSGGGTWGVAFHPRRPRHLFSCSGTGVLTKWYLPPEGHAPPAPT
GPSFGGGGGGGGPGESWAWRGARHLHALSSRSALVGVCYDEAADTVLAVS
KHGHVVVAQGVPGLRL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf