mRNA_P-littoralis_Contig1152.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1152.24.1
Unique NamemRNA_P-littoralis_Contig1152.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1152.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1152contigP-littoralis_Contig1152:62529..62962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size242
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789475.1189218-CDS-P-littoralis_Contig1152:62528..626481680789475.1189218-CDS-P-littoralis_Contig1152:62528..62648Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 62529..62648 -
1680789475.1354232-CDS-P-littoralis_Contig1152:62840..629511680789475.1354232-CDS-P-littoralis_Contig1152:62840..62951Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 62841..62951 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789475.147846-UTR-P-littoralis_Contig1152:62951..629621680789475.147846-UTR-P-littoralis_Contig1152:62951..62962Pylaiella littoralis U1_48UTRP-littoralis_Contig1152 62952..62962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1152.24.1prot_P-littoralis_Contig1152.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1152 62529..62951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1152.24.1

>prot_P-littoralis_Contig1152.24.1 ID=prot_P-littoralis_Contig1152.24.1|Name=mRNA_P-littoralis_Contig1152.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSG
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mRNA from alignment at P-littoralis_Contig1152:62529..62962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1152.24.1 ID=mRNA_P-littoralis_Contig1152.24.1|Name=mRNA_P-littoralis_Contig1152.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=434bp|location=Sequence derived from alignment at P-littoralis_Contig1152:62529..62962- (Pylaiella littoralis U1_48)
GGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGG
ACACGATCGCACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGA
CCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGG
GTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAAC
ACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCGCGTTTCCTTCCC
CTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCGTACCTCTGTGTCGT
CGTTTGTGAAATAGGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTT
GGCTTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGT
GTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1152:62529..62962-

>mRNA_P-littoralis_Contig1152.24.1 ID=mRNA_P-littoralis_Contig1152.24.1|Name=mRNA_P-littoralis_Contig1152.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1152:62529..62962- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGC
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