mRNA_P-littoralis_Contig1152.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1152.23.1
Unique NamemRNA_P-littoralis_Contig1152.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1152.23.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.210e-26
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 RVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN 300
            R T KP+I         +T +  LS+GQK  KLS+ A  +KAANE  ERW   VK+YRE+C E P++QGDAVH+FLI  +TR+LLD KLPP SE RALLN
Sbjct:  160 RDTAKPRITTLTGEPKPNTANYRLSSGQKTTKLSQLATSMKAANEPAERWHRKVKQYREECIEFPKDQGDAVHKFLIDQETRELLDKKLPPKSEQRALLN 259
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BLAST of mRNA_P-littoralis_Contig1152.23.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.620e-18
Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 RVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN 300
            R  VK ++++F   A K+T    LST QK  ++  +AADLKA  E  +R ++   KY E+C E P +QGDA+H+FLI   TR LLD KLP  S+ R LLN
Sbjct:  135 RDNVKGRMESFHGDAAKNTAIDHLSTAQKKTRILESAADLKATQEKQQRLEQKTMKYLEECREFPDDQGDAIHKFLIADSTRTLLDKKLPAESDERTLLN 234
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BLAST of mRNA_P-littoralis_Contig1152.23.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.780e-10
Identity = 36/98 (36.73%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 RVTVKPKIKNFLSPAHKHTTDKDL--STGQKLDKLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 288
            R  ++P+++N  S A    + K+L  ++ QK  KL  TAADL     A  R +E +   R++C  +P EQG+A+H+FL+  +T++++ S+LP GS+ R
Sbjct:  303 REALRPRLEN-ASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 399
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BLAST of mRNA_P-littoralis_Contig1152.23.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-7
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 RVTVKPKIKNFLSPAHKHTTDKDL--STGQKLD-----------KLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 288
            R  ++P+++N  S A    + K++  ++ QK+D           KL  TAA L     A  R +E +   R++C  +P EQG+A+H+FL+  +T++++ S+LP GS+ R
Sbjct:  425 REALRPRLEN-ASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 532
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BLAST of mRNA_P-littoralis_Contig1152.23.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-7
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   94 KLSRTAADLKAANEANERWKETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHR 288
            KL  TAADL        R +E +   R++C  +P EQG+A+H+FL+  +T++++ S+LP GS+ R
Sbjct:  377 KLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQR 441
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1152.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE8.210e-2656.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.620e-1847.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I2_ECTSI2.780e-1036.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE1.070e-732.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.010e-740.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1152contigP-littoralis_Contig1152:60930..61458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789475.0718184-CDS-P-littoralis_Contig1152:60930..611431680789475.0718184-CDS-P-littoralis_Contig1152:60930..61143Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 60931..61143 -
1680789475.0839508-CDS-P-littoralis_Contig1152:61371..614581680789475.0839508-CDS-P-littoralis_Contig1152:61371..61458Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 61372..61458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1152.23.1prot_P-littoralis_Contig1152.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1152 60931..61458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1152.23.1

>prot_P-littoralis_Contig1152.23.1 ID=prot_P-littoralis_Contig1152.23.1|Name=mRNA_P-littoralis_Contig1152.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
RVTVKPKIKNFLSPAHKHTTDKDLSTGQKLDKLSRTAADLKAANEANERW
KETVKKYREKCTELPQEQGDAVHEFLIHPDTRKLLDSKLPPGSEHRALLN
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mRNA from alignment at P-littoralis_Contig1152:60930..61458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1152.23.1 ID=mRNA_P-littoralis_Contig1152.23.1|Name=mRNA_P-littoralis_Contig1152.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=529bp|location=Sequence derived from alignment at P-littoralis_Contig1152:60930..61458- (Pylaiella littoralis U1_48)
CGTGTGACCGTCAAGCCAAAGATCAAAAACTTCCTCTCTCCTGCGCACAA
GCACACCACGGACAAAGACCTCAGCACAGGTCAGAAGGTAAGTCAGGCTT
CAACAAACCAGCGTGGGCATGGCATGGAGTGGTTGGTGGAGAATGAGACC
GTGGGCAATGTGTGATACTCTTGTTGGGTAGGGGGAGGGTGAGGCCGTGG
GCAATGTTTGCCGCGCTTGTTCGGGCAGGTGGGGGGGAGGCCGTGGGCAA
TGTTTGATGCGTTGTTCACCGTTCACCATTCTTATGTGCTCCCTCGCGAT
ATCGCTTGCCGGTAGTTGGACAAGCTCTCGAGGACAGCGGCAGACTTGAA
GGCGGCGAACGAAGCGAACGAGCGGTGGAAGGAGACAGTGAAGAAGTATC
GGGAGAAGTGTACTGAGCTGCCGCAGGAGCAAGGGGACGCTGTCCACGAG
TTTCTCATCCACCCGGATACGAGGAAGCTGCTGGACTCGAAGCTCCCGCC
GGGTAGCGAGCATAGGGCTCTCCTGAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1152:60930..61458-

>mRNA_P-littoralis_Contig1152.23.1 ID=mRNA_P-littoralis_Contig1152.23.1|Name=mRNA_P-littoralis_Contig1152.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1152:60930..61458- (Pylaiella littoralis U1_48)
CGTGTGACCGTCAAGCCAAAGATCAAAAACTTCCTCTCTCCTGCGCACAA
GCACACCACGGACAAAGACCTCAGCACAGGTCAGAAGTTGGACAAGCTCT
CGAGGACAGCGGCAGACTTGAAGGCGGCGAACGAAGCGAACGAGCGGTGG
AAGGAGACAGTGAAGAAGTATCGGGAGAAGTGTACTGAGCTGCCGCAGGA
GCAAGGGGACGCTGTCCACGAGTTTCTCATCCACCCGGATACGAGGAAGC
TGCTGGACTCGAAGCTCCCGCCGGGTAGCGAGCATAGGGCTCTCCTGAAC
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