mRNA_P-littoralis_Contig59.99.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig59.99.3
Unique NamemRNA_P-littoralis_Contig59.99.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: D7G5J0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J0_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 7.370e-51
Identity = 112/187 (59.89%), Postives = 131/187 (70.05%), Query Frame = 1 
Query:  160 VAISAAVLTPEQLNRAVAFSTPGTFFARIGHGTVSQRSRRRARPATPKGFHLLSSASQDGAGPGNEDGGGDSKGSSAAEGGTDSLLGVQALQALEFWKNRRPSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFELEPMNLVGDRLATQV 720
            V  + + L P +L++A AF +           + +  +R R R  T     L SS      GPG E+ G DS  S AAE   D+LLG QALQALEFWKNR PSP LP TQVIGLLMAALQ+ND+PAEN+GL+TVFEFSSGMCRRAVGG A+SFIK AR SVFGA VGC+SF LEPM++VGDRLATQV
Sbjct:   41 VVAAVSALAPRKLHQAGAFCS-----------SFAPWTRLRPRSTTWSCSVLRSSN-----GPGGEEDGADSTDSGAAED-PDNLLGGQALQALEFWKNRTPSPALPPTQVIGLLMAALQRNDDPAENEGLRTVFEFSSGMCRRAVGGTAESFIKEARYSVFGATVGCQSFTLEPMSMVGDRLATQV 210
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A8J5XRW2_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XRW2_DIALT)

HSP 1 Score: 114 bits (286), Expect = 2.110e-26
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:  505 MAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFELEPMNLVGD-------RLATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLIYGVLSSD 834
            M +L +N+ P  + GL T F FS+ MCR AVG + D F+K ARN +FG+ V C S+  EP+NLVG+        +ATQ+V VV+  GR R F+WTL+ +RRPP+AG WL++  L+ D
Sbjct:    1 MDSLARNNFPEVDSGLATCFAFSNDMCRAAVGASLDEFVKFARNPIFGSMVNCESWRAEPVNLVGNGGTPTRGAMATQLVHVVSLSGRTRTFIWTLQQERRPPNAGSWLVWQCLAKD 117
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A8J2WEJ8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEJ8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.090e-20
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 1 
Query:  460 RPSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFELE-----PMNLVGDRLATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLIYGVL 825
            RP P      V+ L M AL +ND+P  + GL+T + FSS MCR AVGG+   F+K ARN  F   V   S+  +     P       L T +V+V  + G+ R+FLWTL+ QRRPPD G WL++  L
Sbjct:   48 RPDPIYSDEAVVALCMNALGRNDDPVPDAGLRTCWNFSSDMCRAAVGGSLADFLKYARNPTFAQLVDHESWSGKLGNRIPATQTRGALTTNMVTVQTNRGQERKFLWTLQQQRRPPDQGCWLVHECL 174
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: L1I8C0_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I8C0_GUITC)

HSP 1 Score: 98.2 bits (243), Expect = 5.930e-20
Identity = 59/149 (39.60%), Postives = 78/149 (52.35%), Query Frame = 1 
Query:  406 DSLLGVQALQALEFWKNRRPSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGN--------ADSFIKGARNSVFGAAVGCRSFELEPMNLVGDR-----LATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLI 813
            DSL+ V  L          PSP   + +V+  ++  L+ ND P  + GLK  F FS+ MCR AVGG+         + FIK A N  F + V C  +E E MN +        LATQ+  +   +G +RRFLWTLE +RRPP  G WLI
Sbjct:   23 DSLVHVSKLPM-------EPSPEFSAEEVMYYILEGLKHNDFPEIDAGLKRCFAFSNNMCRSAVGGDDSRAGGTTVEHFIKYASNPTFQSLVRCEKYEREDMNFLPSSPTRGALATQIAHITTKNGDKRRFLWTLEQERRPPQQGCWLI 164
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A6T8NBT7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NBT7_HEMAN)

HSP 1 Score: 88.6 bits (218), Expect = 3.600e-16
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 1 
Query:  463 PSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNA----------DSFIKGARNSVFGAAVGCRSFELEPMNLVGDR-----LATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLI 813
            P   L    VI  L   L+ ND P  N GL+  F F++ MCR AVGG+           + FIK A N  FG+    + FE E +N++        LATQVVSV    G  RRFLWTL+ +R PP  G WL+
Sbjct:   76 PLVDLSPDDVILALNRGLRFNDVPNNNSGLERCFNFANSMCRAAVGGDGGKTGSHVVSLEQFIKYADNPTFGSMCNNQGFEREKVNIIPGTPTRGALATQVVSVTTQKGDVRRFLWTLQQERLPPQQGMWLV 207
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A7S2EQH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQH2_TRICV)

HSP 1 Score: 86.3 bits (212), Expect = 1.980e-15
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  463 PSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFE------LEPMNLVGDRLATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLIY 816
            P P L +  ++ L +  L+ ND P  N GL+  F FSS  CR A+GG+ + FI  A N  FG+ +  + +       + P       + T +V V   +GR RRFLWTL+ +RRPP    WLI+
Sbjct:   79 PDPDLDAETIVALCLDCLKNNDAPRTNAGLEVCFNFSSDRCRAALGGSLEKFIAYAANPTFGSMIDAKEWTQVSKGPVIPGTPTRGAMQTVLVDVKPVNGRDRRFLWTLQKERRPPRQDCWLIH 202
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A7R9U9G0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9G0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.160e-15
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:  511 ALQKNDEPAENDGLKTVFEFSSGMCRRAVGGN-----ADSFIKGARNSVFGAAVGCRSFE-LEPMNLVGDR-----LATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLIYGVLSSD 834
            AL+ ND+P  N G  T F F+  MCR   G        + FI+ A N  FG+    RS++ L  +N++        LATQ+V +   DGR R+FLWTL+ QRRPP  G WL+   L+++
Sbjct:    6 ALKYNDQPLPNSGFATCFAFADSMCRATAGPRNQKTTLEDFIRYANNPTFGSMKNMRSYDFLGDINIIAGSPTRGALATQLVEIETQDGRMRKFLWTLQQQRRPPLQGCWLVRECLATE 124
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A6L4AG57_9CHLR (DUF4864 domain-containing protein n=2 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A6L4AG57_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 2.050e-13
Identity = 41/127 (32.28%), Postives = 72/127 (56.69%), Query Frame = 1 
Query:  460 RPSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFELEPMNLVGDRLATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLIYGVLSSDVD 840
            +P P LP   V+ + + ALQKND+P  + G++  F+F+S    R   G  D FI+  +N ++   +     E  P+N++ D  A Q+V++++++G    +++TL  Q+ PP  G W+   VL  D+D
Sbjct:   11 QPIPELPPQMVVKIQLEALQKNDDPEPDYGIRVAFQFAS-PANRVATGPVDRFIQLVKNPIYAPMLNWVGVEYGPINVM-DTEAQQIVTIMSAEGETIHYVFTLSRQKLPPYMGCWMTDNVLRIDLD 135
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A7S3RF00_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RF00_9SPIT)

HSP 1 Score: 76.3 bits (186), Expect = 3.390e-11
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 1 
Query:  454 NRRPSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCR-RAVGGNADS--FIKGARNSVFGAAVGCRSFELEPMNLVGD--RLATQVVSVVAS---DGR-RRRFLWTLELQRRPPDAGKWLIYGVLSSDVDGML 849
            +R   P LP  +V+  L+ ALQ NDEP  N GL+T ++++  + R R V G+ D   F K A  S   A +    ++ EP + VGD  +  T VV++      DG+  RR+L+ L  + RPP  G W ++GV+ SD +G L
Sbjct:  192 SRSWDPDLPVEKVVPNLLRALQSNDEPTLNAGLRTFWDWTHELYRGRPVNGHGDFSLFAKRAARSELAALLQSSGWQAEPYSPVGDGSKYGTHVVTIFPCGDLDGQGARRYLFQLRREMRPPYNGAWAVWGVIVSDANGEL 332
[Close]
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Match: A0A523PRF4_9PROT (DUF4864 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PRF4_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 1.140e-9
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:  463 PSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEFSSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFELEPMNLVGDRLATQVVSVVASDGRRRRFLWTLELQRRPPDAGKWLIYGVLSSDVDG 843
            P+P L    V+ + + AL++ND P EN G++  F F+S    + V G    FI+   N V+ A +  R  +  P+ + G   ATQ V ++ASDG+R  +L+TL  Q      G W+  GV+  +V G
Sbjct:   60 PNPNLSPADVVRIQIRALERNDIPHENAGIEIAFRFASPR-NKLVTGPLPRFIQLVSNPVYRAMLNHRQAKYGPLQIEGVN-ATQPVILIASDGQRVGYLFTLSRQDGGTCGGCWMTDGVIRFEVHG 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig59.99.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G5J0_ECTSI7.370e-5159.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J5XRW2_DIALT2.110e-2647.86Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J2WEJ8_9STRA1.090e-2042.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
L1I8C0_GUITC5.930e-2039.60Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6T8NBT7_HEMAN3.600e-1640.91Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2EQH2_TRICV1.980e-1537.10Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9U9G0_9STRA2.160e-1539.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6L4AG57_9CHLR2.050e-1332.28DUF4864 domain-containing protein n=2 Tax=Anaeroli... [more]
A0A7S3RF00_9SPIT3.390e-1136.88Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A523PRF4_9PROT1.140e-934.65DUF4864 domain-containing protein n=1 Tax=Proteoba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig59contigP-littoralis_Contig59:578949..586436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog861299.J421_4426
PFAMsDUF4864
Model size2183
Max annot lvl2|Bacteria
Hectar predicted targeting categorychloroplast
Exons6
Evalue1.31e-08
EggNOG OGs2E7ZG@1|root,332DV@2|Bacteria
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000830.1
Cds size744
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig59.99.3prot_P-littoralis_Contig59.99.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig59 579069..585117 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791217.6482832-UTR-P-littoralis_Contig59:578948..5790681680791217.6482832-UTR-P-littoralis_Contig59:578948..579068Pylaiella littoralis U1_48UTRP-littoralis_Contig59 578949..579068 +
1680791217.732564-UTR-P-littoralis_Contig59:585117..5864361680791217.732564-UTR-P-littoralis_Contig59:585117..586436Pylaiella littoralis U1_48UTRP-littoralis_Contig59 585118..586436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791217.6600971-CDS-P-littoralis_Contig59:579068..5792111680791217.6600971-CDS-P-littoralis_Contig59:579068..579211Pylaiella littoralis U1_48CDSP-littoralis_Contig59 579069..579211 +
1680791217.672934-CDS-P-littoralis_Contig59:581497..5816691680791217.672934-CDS-P-littoralis_Contig59:581497..581669Pylaiella littoralis U1_48CDSP-littoralis_Contig59 581498..581669 +
1680791217.6824203-CDS-P-littoralis_Contig59:582458..5825811680791217.6824203-CDS-P-littoralis_Contig59:582458..582581Pylaiella littoralis U1_48CDSP-littoralis_Contig59 582459..582581 +
1680791217.6910534-CDS-P-littoralis_Contig59:582918..5829991680791217.6910534-CDS-P-littoralis_Contig59:582918..582999Pylaiella littoralis U1_48CDSP-littoralis_Contig59 582919..582999 +
1680791217.711839-CDS-P-littoralis_Contig59:583800..5838781680791217.711839-CDS-P-littoralis_Contig59:583800..583878Pylaiella littoralis U1_48CDSP-littoralis_Contig59 583801..583878 +
1680791217.7233686-CDS-P-littoralis_Contig59:584970..5851171680791217.7233686-CDS-P-littoralis_Contig59:584970..585117Pylaiella littoralis U1_48CDSP-littoralis_Contig59 584971..585117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig59.99.3

>prot_P-littoralis_Contig59.99.3 ID=prot_P-littoralis_Contig59.99.3|Name=mRNA_P-littoralis_Contig59.99.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
MLVVSVPSLLATCVAISAAVLTPEQLNRAVAFSTPGTFFARIGHGTVSQR
SRRRARPATPKGFHLLSSASQDGAGPGNEDGGGDSKGSSAAEGGTDSLLG
VQALQALEFWKNRRPSPTLPSTQVIGLLMAALQKNDEPAENDGLKTVFEF
SSGMCRRAVGGNADSFIKGARNSVFGAAVGCRSFELEPMNLVGDRLATQV
VSVVASDGRRRRFLWTLELQRRPPDAGKWLIYGVLSSDVDGMLMMEG*
back to top

mRNA from alignment at P-littoralis_Contig59:578949..586436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig59.99.3 ID=mRNA_P-littoralis_Contig59.99.3|Name=mRNA_P-littoralis_Contig59.99.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=7488bp|location=Sequence derived from alignment at P-littoralis_Contig59:578949..586436+ (Pylaiella littoralis U1_48)
GTAGACAGATTTAGAGATATCAAACGCCTCATTTTCATATATTTTGGAAA
CCCCTTGTTTCGGTGCGATCATCCTTTACTCGGTATTCACGGTATTCACA
CTCTCTTTGCTCTGCTGGCAATGCTTGTGGTTTCAGTGCCATCTCTGCTT
GCGACCTGCGTGGCGATTTCTGCTGCAGTACTAACACCTGAGCAGCTCAA
CCGAGCGGTGGCTTTCTCCACGCCGGGGACCTTTTTCGCACGGATAGGTC
ACGGGACTGTCAGGTAATTATTTTTTTAATTTGCTGACACTTCTCGCCCT
CCACCTTTCTAGGATTTACGTGAGAAAACAGCATTGCTTGAAGTGGAAAG
CGAATATTTCGCGAGCAGTAAGGGTCGCCCCGGTGGCTCAGTTGATAATC
CACGTAACCTTCTGACATTCACGCGTGAGTTCGAATCCCAGTGCCGTAAC
ACGATCTGGGTTTTCTTCTCACAATGCGCGTGAAAGTGGAAAGCGATCAG
TTCGTGAGTATACAAAATTCGATCGTGCCATCGACGAGGGAAAGGGATCG
CTGTCCTGTTTCTCGCGATAAAAGGTCAACCAAAACAAGGCAAGCACCGC
AGAGGGAAGTGGAGAAAAAAAAAAAAATCTGTGTTGACTTCCCCCTGTGT
GACCCCAGTTGGAGCGTCGACCTACCCGAAAGGTGCAGAGTGGCGTCCAA
TTAAAGGGATGACAACACACACACAGTACATAAAATTTGCCTTGAAAAGG
TCGACGAGGGAAAGGGACGGCTGAACCCTTCTCGTGATGAAAATTAAGCC
AAGCACCGCAGAAGGAAGGTGGGGAAAAAAATCTCCGCCGCGAGGGCCCC
CGGAAGGCCGCCGGGCCGTCGGGGCTCGGGTGTGACACTGCGGCTGCTTT
GCCCGCATTACCGAAAGCTGTAGAATGGCGCCCAAAATAGATACGATGAC
AACACACACATACACACACAACTCGAGCCCTCGAGCTTGAGGTCCGGTCT
TTATCCGCAATTGCACTCACAGACTTCGCTGTGAGACGAAAAGTTAGTCA
GGCCGCAAGATCCGAACAAGTCTCAGAGCAAAAGTGTGTTTCATCCTGAC
ATCCAGACTGCTTTTCGCAGAATTAGACCCAGACATCGAGTACGATGCGG
GGCGCAATCACGACGAGACCGCGAAAAGCGACGGCAGTGCTGTTGCTGAC
AAAATAGGTTGGGTGTGGCGGCGTCCACCCTGCGGCGTCCGTCGTGCGTC
GTGCCCCAAGTGCGGCACGGCGGTCGGAGACCACCCTTGCATCAACCGTC
CCATGCCGGGCGCGAACTCACAAGGCGTACTTGGCGGTTAATATCCTCGC
GGCACCTGTGGCTGCTGCTGCTGCTGCTGCTTCTTGCTGCTCCTTGTCAC
GCTGCTGTGGGTCTGAACGCTAAGGAGAAGACATCCTTCTCCTTGCAGGT
TGGCGGTTGTAAACGAGTGCAAGCTCTCATTTCTTGTCCCGTTGTGGACA
CGGGCCGCAAGACGATTGTCTTGCCTCGACTTGACCGAATTTTGCAACAA
CCTTGGTTACGGCTCACCCAACTTTGGGTCTCTGAATTAGTCGCTCTCCT
TTTTCTTCATTTAAAACCGTAAGTCCGCGCTCACGACCGAAAGTAGCGGC
ACGGAGATCAATTCCTGAAAATAAAATATTTCCCGTCATTGTACTCGATC
ACACGTGCCGATTGGACCTCCCTGCGCTGACTCGTCGCACTCTTTGGTCT
ACGAGCGAAGTCTGGGTGTGAAATTCCGGTCAACCCACGTCTGAGTTGGC
GAACACGCGATTGCCAACACGCATCGCGAGTGCTCTTCCCCCCATGATCG
TTGTGGTATCGGCACATTCCTTCCTACACTCGGTTATTCGAGAACTCGTG
AAAGCAAACCAAGAACCCGAAACACTGGTCATATGTAAACCAACTTCCAT
ATTTTTTTGTGACCCCTCCCTTATCGAGGTCTAATTTCGCTGGGTACCTG
ATTTGGGTTTGACTGTTCTGGTCTACTGGTATTTATATTCCTTCACTTTT
TTTTGTAAAATTTGTGTGATTTTCCGGAGTCCGCTTCATTTTGTCGGATT
TTCCTCTTGTGCCTTTTTTTTGGGTCGTACTGCATCCAGGATTTTCCCCA
CGCATTAACCTACATTCTATAGTAAGGGTAGGCAGCCAAAGACTACGGCA
AGTGTCCCCTATCGGTCGAGCCAACCGCACGGACATCAGAAGGTAATAAA
GCTGAGATCGGAACGTTTTATTTACCTGAAGACAACCCGTACATACATGG
AAATAGTGGTGCTGTATTGCCGTTGCTGCTGGCCTCCTTCCCGTTATTTT
CACATCAGAAGCCATGGTGGTACGCAAGATCCAGCTTTCTACGGTGCGCT
GGTAAAACCAAGCAGAGGCGACTTCTTCCGTTCGACCTGCTTTGATCTCG
CTGGTCTGTTACAGACATCTCTCGTGCATGCACACTGTGCACAATACGCG
CTTTATCTTTATTTTGTGTCGCTGTCGAAAATTAAACCGGTGCACGCAGT
CAGCGCTCCCGGCGACGGGCGCGACCAGCGACACCGAAGGGCTTCCACTT
GCTTTCAAGTGCCTCACAGGATGGCGCTGGGCCCGGGAACGAAGACGGAG
GTGGCGACTCGAAGGGATCGAGCGCAGCAGAAGGTGGCACCGACAGCTTG
CTTGGGGTACAAGCGCTGCAGGTGCCATATCGTTGAGCTTTGACGTTGTC
GATTTGTTGTATTGTGCGAATTACCCGATTCGCGGAACTCTAGAGTAGCT
GCAGGTGGCACCGTCAGCTCGCTAGGGGGGGCAACCGCCCAGACGATAGA
GGTGCCAGGTGCTACACCTCGCGCTGTTTGTTTTTTCGTGAGGGATGTCT
GGGAGATGAATGTAGTTTTCGCACTTTCCTTTGGTTTTGTTTTCTTTAGT
GGGTAGTGAAAAACGACACCATAGCTGGCACCCTAAAAAGCTTGCAGAAG
GATCCAGCAACTTTCCTAACAGCCGTCGGAGAGATTCAAGCACTTCGAGA
CGATTAGTGTAAGGCTAAGTGCCGTAAAAACAGCACTTTGGACTATCAAA
GGGCGAGAGGCCCGATAAACCTGATCGCCGAAAGCATGGGTACCAATAAT
CCAAGCCTAGTTTGCTGTCGTTGGCGCGTAAAAAGCACCTGTGTACGACG
ATGCAGCTAAGCCAACGAGACCCAGAACCCCGCAGCGGCAAATAGCGGCG
GACCATCCAACTGATCGGCTGTGTGTTGCTTGTGCTGTTGCGCGACAACT
TGGTGCACTGTGTCTGAAGCCTTCTGCCGGGAACATTAACCTGTGCGTAA
AATTTCCCTTGGAAACTGGACACCCTACGTAAGGTGCTAGCCATCGTAAA
GGTTATTCCTCCTATCTCGCCGGCTCACACCCTTTGACACTCCTCCCCCT
CGCCGCCGCCGCTGCATGCATTTTTTTCTATCTGCGGCTGTGAAATACAT
CGTATATCAGGCGTTGGAATTTTGGAAGAATCGACGGCCTAGTCCAACCT
TGCCATCGACGCAAGTGATCGGTCTGCTCATGGCTGCCCTGCAGAAGAAT
GACGAACCTGCCGAAAACGATGGTCTCAAGACGGTAAGCAACGCGATCGA
ACGACATGCTGGCAAGCTGCAAGCTGCTGGCTGGCGGTTCTGCCTCGCCA
CTACGAGTGCTGCAGTGGGTGCGACGGTGGCAGACCCACCACGCCTACCA
GAAGCACCGCTCCGCATGTGCGCGTTCTGTACGTGTGTGCGCGTTATATA
TATATATATATATATAGAGAGAGAGAGGCGGCCCTATTACTCTGAAGGTG
GTCAAGTGTAGTGAGAAGCTGTTTCGAAACCGCAGGCATCATCTTTTTTT
TTTTACTCCCGAACCTTTGTTGATGATTTATTCCCCCGCACCGTCCGACA
AAAAACATGTTTCGACCAAGGTCTTCGAGTTTTCCTCAGGCATGTGCCGC
AGGGCTGTGGGGGGAAATGCGGACAGCTTTATTAAGGGAGCGCGAAACTC
GGTGAGCAATTGTCGAGAAGAACAGAGCCATGGAAGCGTGCAAATCTATC
GGCCCTTTGCGGCGTAAATGGCGTCAGCGAATGAAAATAGCGCGCATCGG
CGTAGGTGGGGGGGGGGGTAGCACAAACATGCCCCCCTTTCAAATCTTGG
GAACCTTCACCTAGTAGGAAGGCACAGGGAAGTGGTCCCTGCACGCAACA
GGTTCGTGCGGTGAGCAGTGCGGTGAGCTGGGCATCGACCATGGAGCAGA
CTGGTTTTCCATGAAGGTGTCATGACTCTCAGCGCATTAGAAGAACCGAA
GAAAGTTGAGGCGGCCTTTGCTTTGAGTTCCCCAAAGCTAAAATCGTGGT
CACCCCTCCAATAAAAGCTACCGTTGACTATGTGCAGTGAGCCCTTTGTT
GCGATGTTGCAATTTTGTTTTGTACTCCTCGCGTAGTCCTGATCTCCGAC
GACTTCTGCGATCAGCGTAGTAGCCCGATCGGAACCAATCAAGAGCTCCC
CAAACCAGCCACGGTCCACAGAACGCGTCATTGTGCGTGCATAATCGCCA
AGGCCTCCGTACGGCGGCTCGAAATAGACCTCCATTCTAGACAATCGTGA
GCTTCGTGTCGCATGAGACATTTTCTCGGACGGTCAAAACAGCTTTTTTT
TCCTGCCGTCCGTCGCCCTAACCGGCTGTAACCACCCTCAGTTACTAGCT
GTTGCTTCCTATCAGCGCTGCGGTTCGGGATCACCACCGAGCCCCACCCC
TCCCACTCTCGCGCTCTGTATGTAACCCTCTTCGGTGGTTTTGACGGCTT
AGGTGTTCGGAGCTGCCGTGGGGTGCCGATCCTTCGAGTTGGAGCCTATG
AACCTGGTGGGCGACCGCTTGGCGACACAGGCGCGTGATGTCGTGTTCAC
AACCCCGAAGCCGAAAGTGTCTTCATGCTCATGCCCAGCACTACCTCTCA
AAAGACGCACCTCCTCACCGGAAGCGCCAGGACAGTAGTAGCGTTCAGAG
ATACGAAAAAGGAATCCAAGTGGAGGATAGGCGTTTCCATGAGCAAATAT
AGCAGCAAAGAGGTGACAAAAGAAAGTTATCTTCTCTACCTGTGTTTCGT
TTAAGGGTAAGGTGACTTTGGGCAATCTCCGCATTCCTGGCGCTATTAGA
GGGGAGTTCTGGCTCCCACGGTACCTGAAAGGTGCTCCGATCTCTCAACG
TTCTATGTCAAAATCCTAGGCCGGCGCCCCCCCCCCCCGCTGGTCTTTTC
GCAGCTATCCACTCTCTGCCCTTTTGAAGCTTGAGAAGAGGGCGTCAATG
TCGTCTTCGTATCACGGTTACAGAGAGCATGGAACTCCTTCACGGATGTT
CTGACCGTGCATTATCGTCAGAGTTCCTGTAGCGCGAGAATTAGCTGCTG
AACTTTCCGACCTTTGAGCACGCACGAGTAAGCACAACATTTTGGGGCAC
GGCTATGCGTCACTTGCTCGCTCACAGCATGCACTTGCCACAACCAACCA
CGTCCCACGAAACCAAGCGAAGGTGCTTGCGCTGTGTGTAATGGCGTTGC
ATGCAGTAAACGGCCTTTGCGGGCAACCAAAAACGACTCCGAGAGGTGTA
ATTTCTCGTGAAATTGAAGCTGTCAGCCAGCAGCCCGAAATATCGGCAAA
TTCGGAGATCTGGTTTGGTTTACACCACACCGCCGTCCCTCACGTCTTGT
GTATCCCCGATGAATGAGCGAGTTCTACGGGGAGAAGACGATGGCCGCGG
GACATTGACAGCAAGGTACAACACCAGGCACCCAGGCTGCTCCTACGGCA
GTGTCGAAATGGAAAACAAAAAAAGATGCGCAGCAAGTTCTGCAAGTTAT
AACATTTGCTTCTGCCGACCTAAACGCTTTTACTGGTCGACGACTTGAAC
GCATGAAACAGTAATCTGGATGGGCTAGCGGGGTGGCAGCGCTGACAAAC
CTTGGTAACGGCCCCTCCTCAGGTGGTGAGCGTGGTTGCCTCGGATGGGA
GACGGAGGAGGTTTCTGTGGACTCTCGAACTTCAGCGGCGGCCTCCGGAC
GCAGGGAAGTGGCTGATCTACGGGGTGCTCAGCTCCGACGTTGACGGCAT
GCTGATGATGGAAGGCTAAATTTGTTGCCAAGTCGCCCCCCATCTTCTGC
GTTATGGCAGACCGGCTCCTCTGCTCAACTGTTCGAGACATTTGAGAGTT
TGCGCCATTGCTGCTGCCTCTGCCGCTGCTGACGTACTTCGCCCTAAAGC
ACAGGTGTGATAGACCGCGCCTTTTATTGCGTGTGCTTGGGTGGGGGTGG
TAGTGGTTGTGATAACGGCTGTGGCCTGGAGGGTGCTGTATTCCGCTGTG
TGTTGTATTTTGTATTTTGCTGTGTTGACGAGAAAGGGGGTGTCAAATTA
TTTAGTTCCGCAAGTTATTGCCTTCGGGTGTCCCTGATTTTGCTGGTCGT
CAGAGATGTTTTTGGCTGTTGGTAGGAGCTCGGTGCGGGCTCAGACAATT
TTCTTAGGCTGCGACAAAGTCAAGGGCATGCGGAGGTCCTGAAGCGGATG
CAGAAAGGCACCCCCCCCCCTGTCGTGAGTATATTGAAACCTTGAACTTC
GTTGACTGTAGTCAATATTTGCGTCATAGCACACGATGCTCGAGAAGGCG
GTAGGCACAACGGAGGAAGATGGGGAGCGCTTGCAGACGAGCGTGTGTCC
ATCACAAAACGCTCTGCTTTCCAGAACACACAGGCGCCTGTCGTTATGAT
TTTCTAACTCTAACTATCACAAACTCTGAAGACTATGGGTGTGCTTCCAC
TTGGACTTGCCAAGAAGGAGCAAATGGGCCGTGCCTTATCATTTGCAGGT
GCTTTTGAGCGTTCGCTGTGAGCATGCAAATCGGGTGCTGGGGACGTCAA
TGTCGTACGTAGCCGAAGTTTAAACGATAATGAGGGGCGGCCGGGGGGGG
GAGATGCCTGGGTGATTTCCTCACAGGGATTCCGAACTACTGTTGCCCCG
CGTATCGGTGCCTGTTGGTGTCCGTACAGCTGACCCTGTGTGTTTTTTAC
AGCGTGTGTTCGTGACTACCTGTTAAAAATTTGGAGGGAAACGTGCACAG
GCCTTGGTCGGTCCAAAAGCTTGCCGTTATTTGCACATTTGGTTGCTTCA
CCGCGAAAATACTTATGTGGGGCGCTTGCGGAATGACATCATGTGTTCAA
CGTTTCGCTCCCATACCCCTAAGAATAACAGAGCCAACCGCCGGAGATAC
AAGTCAGCCCCCCGTCCTCACCGGTGTACTTTCCGCTCCGCTTTTGTGAG
AGCCTTATTCACAAACGTGTGTGCCGTAATGGCCACCTTCGCGTCCCTTG
TGTAGAAAGAAGGGTCCAGCCGCGGTCATTGGCTGTGTCACACACAAGTA
AATACCTTCACTATGAGAGGCGCGTATCAACACGCCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig59:578949..586436+

>mRNA_P-littoralis_Contig59.99.3 ID=mRNA_P-littoralis_Contig59.99.3|Name=mRNA_P-littoralis_Contig59.99.3|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig59:578949..586436+ (Pylaiella littoralis U1_48)
ATGCTTGTGGTTTCAGTGCCATCTCTGCTTGCGACCTGCGTGGCGATTTC
TGCTGCAGTACTAACACCTGAGCAGCTCAACCGAGCGGTGGCTTTCTCCA
CGCCGGGGACCTTTTTCGCACGGATAGGTCACGGGACTGTCAGTCAGCGC
TCCCGGCGACGGGCGCGACCAGCGACACCGAAGGGCTTCCACTTGCTTTC
AAGTGCCTCACAGGATGGCGCTGGGCCCGGGAACGAAGACGGAGGTGGCG
ACTCGAAGGGATCGAGCGCAGCAGAAGGTGGCACCGACAGCTTGCTTGGG
GTACAAGCGCTGCAGGCGTTGGAATTTTGGAAGAATCGACGGCCTAGTCC
AACCTTGCCATCGACGCAAGTGATCGGTCTGCTCATGGCTGCCCTGCAGA
AGAATGACGAACCTGCCGAAAACGATGGTCTCAAGACGGTCTTCGAGTTT
TCCTCAGGCATGTGCCGCAGGGCTGTGGGGGGAAATGCGGACAGCTTTAT
TAAGGGAGCGCGAAACTCGGTGTTCGGAGCTGCCGTGGGGTGCCGATCCT
TCGAGTTGGAGCCTATGAACCTGGTGGGCGACCGCTTGGCGACACAGGTG
GTGAGCGTGGTTGCCTCGGATGGGAGACGGAGGAGGTTTCTGTGGACTCT
CGAACTTCAGCGGCGGCCTCCGGACGCAGGGAAGTGGCTGATCTACGGGG
TGCTCAGCTCCGACGTTGACGGCATGCTGATGATGGAAGGCTAA
back to top