mRNA_P-littoralis_Contig1152.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1152.2.1
Unique NamemRNA_P-littoralis_Contig1152.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A2G8S714_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S714_9APHY)

HSP 1 Score: 55.5 bits (132), Expect = 2.220e-5
Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 1
Query:   43 GAEDGKPSAKGPMCYNCRGIGHFARDCTVKIC-KRCQGRGHDEDKCGSPADMRTNLAVELPDCDSG----SAVGLEPWHV----DSGASGTVTRSFGMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGY 507
            G   G+P     +CYNCRG+GH AR+C  K   K  Q      D   +PA    N A E      G    SA+   P       DSGAS  ++        FR  N  + +   +       G GD+ + + +   + L+ +++  Y P+ A+ L+S+ +    GY
Sbjct:  549 GPSGGRPPV---ICYNCRGVGHIARNCRQKGGGKEGQWPKPKTDDAANPAKADANAATEKGFLALGNVVTSALAAVPGTYIDVFDSGASVHISPYRECFVKFRELNPARAITAANGEQFFATGEGDVEIRVPNGPSTQLLTLRDVLYSPSVAFALVSIKRVDEGGY 711          
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A834R2W3_SARSC (Copia protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R2W3_SARSC)

HSP 1 Score: 55.1 bits (131), Expect = 2.650e-5
Identity = 40/148 (27.03%), Postives = 64/148 (43.24%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSFGMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGYKFE 516
            P+C+NC+ IGH A+DC   +  R   + + +       ++ +N  +               W +DSGA    T ++ ++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  + LS SQ  + G+  E
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQYSDRVVNIASNSIL------------ANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336          
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: T1J0W8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0W8_STRMM)

HSP 1 Score: 55.1 bits (131), Expect = 2.770e-5
Identity = 45/171 (26.32%), Postives = 72/171 (42.11%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDE-----DKCGSPADMRTNLAVELPDCDSGSAVGL------EPWHVDSGASGTVTRSFGMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSML--MAVKNAAYVPTFAYDLLSMSQCVRQGYKFETDDPGMLVTKTS 552
             C+NC G+GHFA+DC     KR     ++      DK  S    +       P  DS   V L      + +++DS  +  V  +  +  NF+    +          I+G GDI + +  D+  +   + +KN  Y P F  +L+S S+C +  Y   T      V KT+
Sbjct:  263 QCFNCSGLGHFAKDCPSPRKKRDNRNANNSVVKNSDKVLSVKSGKRGAFYAHPIFDSHDTVALSSVLSNDTFYLDSACTNHVCSNKSLFVNFKSIKPVPLELGEGYSSIEGIGDIEL-ITYDLDGIQNEVTLKNVCYAPKFKRNLISESKCDKASYDVHTHKGIKSVYKTN 432          
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A834RG90_SARSC (Uncharacterized protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RG90_SARSC)

HSP 1 Score: 55.1 bits (131), Expect = 2.880e-5
Identity = 40/148 (27.03%), Postives = 64/148 (43.24%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSFGMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGYKFE 516
            P+C+NC+ IGH A+DC   +  R   + + +       ++ +N  +               W +DSGA    T ++ ++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  + LS SQ  + G+  E
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQYSDRVVNIASNSIL------------ANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336          
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR)

HSP 1 Score: 53.5 bits (127), Expect = 9.580e-5
Identity = 43/178 (24.16%), Postives = 84/178 (47.19%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELP-DCDSGSAVGLEPWHVDSGASGTVTRS---FGMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGYKFETDDPGMLVTKTSTGE--QLLMRPDNDLY 594
             CYNC   GH   DC  +   +   +  ++D+     + R  +A+    +C+       + W +DSG S  +T     F  M N  P + +  G +  + Q++ +G I +++++    +L  V+   + P   Y+LLS+ Q ++ GY+   D+    +T   TG+   ++ R  N+L+
Sbjct:  343 QCYNCNQFGHIKADCWNEPQAQAAVQDEEDDE-----EYRLFMAIGCEKNCEQ------DVWFLDSGCSNHMTPKRDIFTCMYN-TPKHHVKLG-NGKSIQVENKGKIKLEVEAGKYRVLDDVQ---FAPELGYNLLSVGQLMKAGYRLSFDEDKCTITHKQTGDIMSVIWRSSNNLF 504          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2G8S714_9APHY2.220e-527.71Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A834R2W3_SARSC2.650e-527.03Copia protein n=1 Tax=Sarcoptes scabiei TaxID=5228... [more]
T1J0W8_STRMM2.770e-526.32Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A834RG90_SARSC2.880e-527.03Uncharacterized protein n=1 Tax=Sarcoptes scabiei ... [more]
A0A5N6L843_9ASTR9.580e-524.16Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1152contigP-littoralis_Contig1152:16496..17266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog225117.XP_009373522.1
PFAMsDUF4219,Retrotran_gag_2
Model size645
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.47e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5K@33090|Viridiplantae,3GICD@35493|Streptophyta,4JSBY@91835|fabids
Descriptiongag-polypeptide of LTR copia-type
Cds size645
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.8920107-CDS-P-littoralis_Contig1152:16495..169001680789474.8920107-CDS-P-littoralis_Contig1152:16495..16900Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 16496..16900 -
1680789474.9041147-CDS-P-littoralis_Contig1152:17026..172661680789474.9041147-CDS-P-littoralis_Contig1152:17026..17266Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 17027..17266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1152.2.1prot_P-littoralis_Contig1152.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1152 16496..17266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1152.2.1

>prot_P-littoralis_Contig1152.2.1 ID=prot_P-littoralis_Contig1152.2.1|Name=mRNA_P-littoralis_Contig1152.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
RGNNRKKKSSDGKDGAEDGKPSAKGPMCYNCRGIGHFARDCTVKICKRCQ
GRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRS
FGMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAY
VPTFAYDLLSMSQCVRQGYKFETDDPGMLVTKTSTGEQLLMRPDNDLYVS
YGRRVDGEVEIACAV
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mRNA from alignment at P-littoralis_Contig1152:16496..17266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1152.2.1 ID=mRNA_P-littoralis_Contig1152.2.1|Name=mRNA_P-littoralis_Contig1152.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig1152:16496..17266- (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA GGACGGCAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA TAGGCCATTTCGCCCGCGACTGCACTGTGAAGATCTGCAAGCGATGCCAA GGAAGAGGGCACGACGAAGACAAGTGCGGGTCTCCGGCCGATATGCGGAC AAACTTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGTGACTTCGA GCGTAGAGGCCGCAGGGTTCATAGCAAAGGAGCTGGACCTAGCCGGGTGT GTGCGTCTACAAGGCAAGTGCGATGATGGTGGTCCAATCGGTGGTGTAGG GGATTTCGCACTGCAGGCTGTTGGTTTAGAACCCTGGCACGTTGACTCCG GGGCTTCAGGCACCGTGACGCGTAGCTTCGGGATGATGACCAACTTCCGA CCGTGCAACAAGCTAGTTGCAGGTCCAGACAATGTCACTCACCAGATTAA AGGCAGAGGTGACATAGCCGTCGACCTCAAGTCTGATGTGGGGTCAATGC TTATGGCTGTCAAAAACGCAGCCTACGTGCCCACGTTTGCCTACGATCTG CTCTCCATGTCCCAGTGCGTGCGACAAGGATACAAATTCGAAACCGATGA CCCCGGTATGCTCGTCACTAAAACGTCGACCGGAGAACAACTACTGATGC GCCCCGACAATGACTTATATGTCTCATACGGCCGCAGAGTTGATGGTGAG GTAGAAATAGCCTGCGCCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1152:16496..17266-

>mRNA_P-littoralis_Contig1152.2.1 ID=mRNA_P-littoralis_Contig1152.2.1|Name=mRNA_P-littoralis_Contig1152.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1152:16496..17266- (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA
GGACGGCAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA
TAGGCCATTTCGCCCGCGACTGCACTGTGAAGATCTGCAAGCGATGCCAA
GGAAGAGGGCACGACGAAGACAAGTGCGGGTCTCCGGCCGATATGCGGAC
AAACTTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGCTGTTGGTT
TAGAACCCTGGCACGTTGACTCCGGGGCTTCAGGCACCGTGACGCGTAGC
TTCGGGATGATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCC
AGACAATGTCACTCACCAGATTAAAGGCAGAGGTGACATAGCCGTCGACC
TCAAGTCTGATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTAC
GTGCCCACGTTTGCCTACGATCTGCTCTCCATGTCCCAGTGCGTGCGACA
AGGATACAAATTCGAAACCGATGACCCCGGTATGCTCGTCACTAAAACGT
CGACCGGAGAACAACTACTGATGCGCCCCGACAATGACTTATATGTCTCA
TACGGCCGCAGAGTTGATGGTGAGGTAGAAATAGCCTGCGCCGTG
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