mRNA_P-littoralis_Contig59.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig59.73.1
Unique NamemRNA_P-littoralis_Contig59.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5KMG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.180e-37
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 2 
Query:    2 ALYIWPESMLMTSENGLLNVARRNRKEPPPDLLPLLRWLLLLPNEVQG*EPMHVSLAPIRLRRFFSADRGEAHNPRRLLHDNGKRLSTGA 271
            ALYIWPESMLMTS+NGL NVAR N+  PP DLL +LR LLLLPNEVQG EPMHVSLAPIRLRRF SADRGEAHNPR LLHDNG   +  A
Sbjct:    5 ALYIWPESMLMTSKNGLRNVARINQNGPPQDLLAVLRRLLLLPNEVQGKEPMHVSLAPIRLRRFLSADRGEAHNPRPLLHDNGNAATKAA 94
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5K7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.130e-32
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:    1 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXX AERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDR RD
Sbjct:   54 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXAAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRHRD 145
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5KAT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.130e-32
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            GVVHMAREHVDD+RERATKRXXXXXXXXXXXXXXXXXXXXX AERGPRLGAD RLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDR RD
Sbjct:   54 GVVHMAREHVDDVRERATKRXXXXXXXXXXXXXXXXXXXXXAAERGPRLGADTRLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRHRD 145
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5JCJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.010e-31
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            GVVHMAREHVDD+RERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTT PRQRQTAIDR  D
Sbjct:   54 GVVHMAREHVDDVRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTRPRQRQTAIDRHHD 145
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5KC25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC25_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.110e-30
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:   13 MAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            MAREHVDDLR+RATK XXXXXXXXXXXXXXXXXXXXX AERGPR GADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDR RD
Sbjct:    1 MAREHVDDLRKRATKXXXXXXXXXXXXXXXXXXXXXXAAERGPRSGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRHRD 88
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.980e-29
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            GVVHMAREHVDDLRERA+KRXXXXXXXXXXXXXXXXXXXXXXAER PRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQR+ AIDR RD
Sbjct:   54 GVVHMAREHVDDLRERASKRXXXXXXXXXXXXXXXXXXXXXXAERCPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRRMAIDRHRD 145
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BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.230e-28
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    1 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            GVV MAREHVDDL+ERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEA LFSGPRRSPQPTTTPPRQRQTAID  RD
Sbjct:   54 GVVRMAREHVDDLQERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEAHLFSGPRRSPQPTTTPPRQRQTAIDGHRD 145
[Close]
BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.860e-28
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 GVVHMAREHVDDLRERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD 276
            GV  MAREHVDDL+ERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEA LFSGPRRSPQPTTTPPRQRQTAID  RD
Sbjct:  678 GVARMAREHVDDLQERATKRXXXXXXXXXXXXXXXXXXXXXXAERGPRLGADARLARSDPLEAHLFSGPRRSPQPTTTPPRQRQTAIDGHRD 769
[Close]
BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Match: A0A6H5KQ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ25_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.190e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:    2 ALYIWPESMLMTSENGLLNVARRNRKEPPPDLLPLLRWLLLLPNEVQG 145
            ALY+WPESMLMT +NGLLNVARRNRKEPPPDLLPLLRW+LLLPNEVQG
Sbjct:   54 ALYVWPESMLMTLKNGLLNVARRNRKEPPPDLLPLLRWVLLLPNEVQG 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig59.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KMG8_9PHAE2.180e-3778.89Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K7D4_9PHAE1.130e-3297.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAT1_9PHAE3.130e-3295.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCJ4_9PHAE1.010e-3195.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC25_9PHAE4.110e-3094.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM72_9PHAE1.980e-2994.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE2.230e-2894.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE7.860e-2893.48MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KQ25_9PHAE1.190e-2491.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig59contigP-littoralis_Contig59:431754..432230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size277
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791216.5678427-CDS-P-littoralis_Contig59:431753..4317741680791216.5678427-CDS-P-littoralis_Contig59:431753..431774Pylaiella littoralis U1_48CDSP-littoralis_Contig59 431754..431774 -
1680791216.5783567-CDS-P-littoralis_Contig59:431975..4322181680791216.5783567-CDS-P-littoralis_Contig59:431975..432218Pylaiella littoralis U1_48CDSP-littoralis_Contig59 431976..432218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791216.5888186-UTR-P-littoralis_Contig59:432218..4322301680791216.5888186-UTR-P-littoralis_Contig59:432218..432230Pylaiella littoralis U1_48UTRP-littoralis_Contig59 432219..432230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig59.73.1prot_P-littoralis_Contig59.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig59 431754..432218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig59.73.1

>prot_P-littoralis_Contig59.73.1 ID=prot_P-littoralis_Contig59.73.1|Name=mRNA_P-littoralis_Contig59.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
MAREHVDDLRERATKRRKKKPEGAATRSAAAAAVAAAAAERGPRLGADAR
LARSDPLEALLFSGPRRSPQPTTTPPRQRQTAIDRRRD
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mRNA from alignment at P-littoralis_Contig59:431754..432230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig59.73.1 ID=mRNA_P-littoralis_Contig59.73.1|Name=mRNA_P-littoralis_Contig59.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig59:431754..432230- (Pylaiella littoralis U1_48)
GGCGTTGTACATATGGCCCGAGAGCATGTTGATGACCTCCGAGAACGGGC
TACTAAACGTCGCAAGAAGAAACCGGAAGGAGCCGCCACCAGATCTGCTG
CCGCTGCTGCGGTGGCTGCTGCTGCTGCCGAACGAGGTCCAAGGTTAGGA
GCCGATGCACGTCTCGCTCGCTCCGATCCGCTTGAGGCGCTTCTTTTCAG
CGGACCGAGGAGAAGCCCACAACCCACGACGACTCCTCCACGACAACGGC
AAACGGTGAGTTCAGAGCGGTGTACGGCAAGAGATAGGGTGATATCTTGC
GTATTTCTCAAATGTTTGAATTTCCGTGTAGGCTATACTACTGTATTTCC
GGTATATTTCCCCTGCTCTCCATCTTCCCACGAAACTATTGAGTCCCATC
CTTACATTTCCCCCTCTCTCGTCAAAACTGCTTCAAATTTTATCGTAATC
AAGCAGGCTATCGACCGGCGCCGCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig59:431754..432230-

>mRNA_P-littoralis_Contig59.73.1 ID=mRNA_P-littoralis_Contig59.73.1|Name=mRNA_P-littoralis_Contig59.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig59:431754..432230- (Pylaiella littoralis U1_48)
ATGGCCCGAGAGCATGTTGATGACCTCCGAGAACGGGCTACTAAACGTCG
CAAGAAGAAACCGGAAGGAGCCGCCACCAGATCTGCTGCCGCTGCTGCGG
TGGCTGCTGCTGCTGCCGAACGAGGTCCAAGGTTAGGAGCCGATGCACGT
CTCGCTCGCTCCGATCCGCTTGAGGCGCTTCTTTTCAGCGGACCGAGGAG
AAGCCCACAACCCACGACGACTCCTCCACGACAACGGCAAACGGCTATCG
ACCGGCGCCGCGAC
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