mRNA_P-littoralis_Contig59.72.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig59.72.2
Unique NamemRNA_P-littoralis_Contig59.72.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 606 bits (1563), Expect = 9.880e-212
Identity = 281/289 (97.23%), Postives = 284/289 (98.27%), Query Frame = 2
Query:  128 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 994
            LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVW KFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPK+S CACQIHTQQGLYLK  EMLMPAMH+NCDCTCK CDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGG+FEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC
Sbjct:   14 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKISPCACQIHTQQGLYLKV-EMLMPAMHSNCDCTCKRCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGKFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 301          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 613 bits (1580), Expect = 3.660e-210
Identity = 280/289 (96.89%), Postives = 285/289 (98.62%), Query Frame = 2
Query:  128 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 994
            LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVW KFLKWPEYLGLKAELLRED+SFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPA+HANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRF DQVMEDGKVHKKQQ+PQ GKL DLW+EFVEHSKKY+HHHELAKWQRQAHNMC
Sbjct:  279 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHSKKYLHHHELAKWQRQAHNMC 567          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 580 bits (1496), Expect = 2.600e-206
Identity = 270/295 (91.53%), Postives = 280/295 (94.92%), Query Frame = 2
Query:  128 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMCEISDFA 1012
            LEKGRYLWAPRKER+DKMDERVM LARRFWHSDDISRASGDSGT+A+WRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRT+FLSTRCGCLVEPKVSQCACQIHTQQGLY KAFEMLMPA+HANC+CTC WCDG SGCGKWMAMCKDLHSFSEALACEK  FL E RGGRFEHWGRKPACVAMEC E GFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQ+PQAGKL DLW E VEHSKKY+HHHELAKWQRQAHNMC ++ FA
Sbjct:   14 LEKGRYLWAPRKERTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCLVEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDG-SGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLPQAGKLGDLWDEVVEHSKKYMHHHELAKWQRQAHNMC-LATFA 306          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 613 bits (1580), Expect = 4.560e-203
Identity = 280/289 (96.89%), Postives = 285/289 (98.62%), Query Frame = 2
Query:  128 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 994
            LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVW KFLKWPEYLGLKAELLRED+SFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPA+HANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRF DQVMEDGKVHKKQQ+PQ GKL DLW+EFVEHSKKY+HHHELAKWQRQAHNMC
Sbjct:  903 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHSKKYLHHHELAKWQRQAHNMC 1191          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 484 bits (1247), Expect = 6.610e-165
Identity = 232/279 (83.15%), Postives = 234/279 (83.87%), Query Frame = 2
Query:  266 MWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCG-----------------------------------CL-VEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 994
            MWRPSKKAGEEY PRRQLMVAGDQ WRKFLKWPEYLGLKAELLRED+SFTDPGRTLFLSTRCG                                   C+ VEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEAL CEKVD LEEDRGGRFEHWG KPACVAMECSEC FGNP  IPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKL DLWKEFVEHSKKYIHHHELAKWQRQAHNMC
Sbjct:    1 MWRPSKKAGEEYQPRRQLMVAGDQAWRKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGDRSSVMDSSAVSPPQEDGLFADPLSSFLSVSTVRLCVTVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALDCEKVDCLEEDRGGRFEHWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLGDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 279          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 434 bits (1115), Expect = 5.870e-144
Identity = 200/225 (88.89%), Postives = 206/225 (91.56%), Query Frame = 2
Query:  320 MVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 994
            MVAGDQVW KFLKWPEY+GLKAELLREDSSFTDPGRTLFLSTRCGC VEPKVS+CACQ HTQQG+ LKAFEMLMPA HANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRF DQVMEDGKVHKKQQ+PQ GKL DLW+EFVEHSKK           RQAHN+C
Sbjct:    1 MVAGDQVWHKFLKWPEYMGLKAELLREDSSFTDPGRTLFLSTRCGCSVEPKVSKCACQTHTQQGIDLKAFEMLMPATHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHSKK-----------RQAHNIC 214          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 6.370e-128
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 2
Query:  128 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALA 655
            LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCK LHSFSEALA
Sbjct:   14 LEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKYLHSFSEALA 189          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 3.640e-125
Identity = 189/296 (63.85%), Postives = 219/296 (73.99%), Query Frame = 2
Query:  134 KGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMCEISDFATLR 1021
            +G Y++  RK RSD  +  VM LAR FWHSDD+SRA+G+SG K M++ SKK     HPRRQLM  GD VWR FL+   YL LK+ LL +DS+FTDPGRT FLSTRCGCLV+P  SQCACQIHTQQ LYL+A   LM ++H +CDC C WCD   GC +W  MC+DL  FS+ALACEKV+ LE D  G FE WGRKPAC AM+CSECGFG PGGIP NC A+    +RVV W+RFEDQ M DGKVHKKQQ+PQ GKL+DLW EF+ HS  Y+ HH LAKWQRQAH MC     ATLR
Sbjct:  270 EGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDD-LGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHS--YMEHHALAKWQRQAHKMC----MATLR 557          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 8.550e-121
Identity = 174/272 (63.97%), Postives = 203/272 (74.63%), Query Frame = 2
Query:  134 KGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIH 949
            +G Y++  RK RSD  +  VM LAR FWHSDD+SRA+G+SG K M++ SKK     HPRRQLM  GD VWR FL+   YL LK+ LL +DS+FTDPGRT FLSTRCGCLV+P  SQCACQIHTQQ LYL+A   LM ++H +CDC C WCD   GC +W  MC+DL  FS+ALACEKV+ LE D  G FE WGRKPAC AM+CSECGFG PGGIP NC A+    +RVV W+RFEDQ M DGKVHKKQQ+PQ GKL+DLW EF+ HS K IH
Sbjct:  270 EGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDD-LGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSVKAIH 539          
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 1.320e-112
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:  533 MLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 994
            MLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPM CDAL SMADRVVGWLRFE+QVMEDGKVHKKQQ+PQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC
Sbjct:    1 MLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVMEDGKVHKKQQVPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMC 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig59.72.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K491_9PHAE9.880e-21297.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE3.660e-21096.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI39_9PHAE2.600e-20691.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE4.560e-20396.89MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KY26_9PHAE6.610e-16583.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE5.870e-14488.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE40_9PHAE6.370e-12899.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE3.640e-12563.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF90_9PHAE8.550e-12163.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4W3_9PHAE1.320e-11297.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig59contigP-littoralis_Contig59:429640..431482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1375
Hectar predicted targeting categoryother localisation
Exons4
Cds size939
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig59.72.2prot_P-littoralis_Contig59.72.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig59 429898..431304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791216.4832864-UTR-P-littoralis_Contig59:429639..4298971680791216.4832864-UTR-P-littoralis_Contig59:429639..429897Pylaiella littoralis U1_48UTRP-littoralis_Contig59 429640..429897 -
1680791216.5421262-UTR-P-littoralis_Contig59:431304..4314821680791216.5421262-UTR-P-littoralis_Contig59:431304..431482Pylaiella littoralis U1_48UTRP-littoralis_Contig59 431305..431482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791216.4930882-CDS-P-littoralis_Contig59:429897..4300741680791216.4930882-CDS-P-littoralis_Contig59:429897..430074Pylaiella littoralis U1_48CDSP-littoralis_Contig59 429898..430074 -
1680791216.5071542-CDS-P-littoralis_Contig59:430224..4307031680791216.5071542-CDS-P-littoralis_Contig59:430224..430703Pylaiella littoralis U1_48CDSP-littoralis_Contig59 430225..430703 -
1680791216.5190883-CDS-P-littoralis_Contig59:430858..4310651680791216.5190883-CDS-P-littoralis_Contig59:430858..431065Pylaiella littoralis U1_48CDSP-littoralis_Contig59 430859..431065 -
1680791216.5282164-CDS-P-littoralis_Contig59:431228..4313041680791216.5282164-CDS-P-littoralis_Contig59:431228..431304Pylaiella littoralis U1_48CDSP-littoralis_Contig59 431229..431304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig59.72.2

>prot_P-littoralis_Contig59.72.2 ID=prot_P-littoralis_Contig59.72.2|Name=mRNA_P-littoralis_Contig59.72.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=313bp
MDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVA
GDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVS
QCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKD
LHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIP
MNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVE
HSKKYIHHHELAKWQRQAHNMCEISDFATLRTHQQQHCTAAADRQQTADT
RPSGGGNDQSHP*
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mRNA from alignment at P-littoralis_Contig59:429640..431482-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig59.72.2 ID=mRNA_P-littoralis_Contig59.72.2|Name=mRNA_P-littoralis_Contig59.72.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1843bp|location=Sequence derived from alignment at P-littoralis_Contig59:429640..431482- (Pylaiella littoralis U1_48)
CTGCTGAGCCGCAGGGTGCCGTCAGCCTTGCCGCGCGAGCACAGGGTCTC GGTGTGAGAGACGGCACGTTCCGTGCAGCGCGTACCCGGATGCACAGAAC TGACCACACCATACCTCCACAGGAAATTTGGAGAAGGGGAGATACCTCTG GGCTCCTCGCAAGGAAAGGAGCGACAAGATGGACGAACGTGTCATGGGTT TGGCGAGGAGGTTCTGGCACTCTGACGATATTTCTCGTGCGTCGGGAGAC TCCGGTAAGCGCTGTCAAATATTGTTGTTGTACAATTGTAGATCGGGGTA TCTCCTTTGCCGTTTTTTGTCGACGTGACGTATCAACTACACTTCTCTGT ACCTCTTTAGATAGCTTCACTTTTGCTGCTACACTGCACACTGCTGTTCT TTCGTACACCCCTGTAGGGACGAAAGCTATGTGGAGGCCGTCCAAGAAGG CAGGGGAGGAGTATCACCCCCGTAGGCAGCTCATGGTTGCGGGGGACCAA GTATGGCGCAAGTTTCTGAAGTGGCCGGAGTACTTGGGGCTTAAGGCGGA GCTGCTGAGGGAAGACAGCAGCTTCACGGACCCTGGGCGGACGCTGTTCC TCTCGACGCGGTGTGGGTGTTTAGGTGGGTAGACATGAGGGGAGAGCTCC GTTTTTTTAATGACCGTTCCAGCGTAATGGACTCTTCTGCTGTGTCACCG CCCCAGGAGGACGGCCTCTTTGCTGACCTGTTGTCCTCCCCTCTGTCCGT TTCAACTGTTCGCTTCTGGTGTGTCACAGTGGAACCCAAGGTATCGCAGT GTGCATGCCAGATCCACACGCAGCAGGGGCTGTACCTGAAGGCCTTCGAG ATGTTGATGCCTGCAATGCATGCCAACTGCGACTGCACGTGCAAGTGGTG CGACGGGGGGAGTGGGTGTGGAAAGTGGATGGCCATGTGTAAAGATCTGC ACAGCTTTTCAGAGGCTTTGGCTTGCGAAAAGGTAGACTTTCTTGAGGAG GACCGAGGGGGTAGGTTTGAGCACTGGGGGAGGAAGCCCGCATGCGTTGC GATGGAATGCTCCGAATGCGGGTTTGGCAACCCAGGTGGCATCCCCATGA ACTGCGATGCCCTGGGGTCTATGGCGGACAGAGTAGTTGGGTGGCTTCGA TTCGAGGATCAAGTCATGGAGGATGGGAAGGTGCACAAGAAGCAGCAGAT ACCCCAGGCCGGAAAACTGGACGACCTGTGGAAGGAGTTTGTGGAGCACT CGAAGAAGGTGAAGTAAGGAACCGCATGTGGAATGAGCGTCATAAAATGC TGGAGGCATGTAGTCAATCGTGCATCAACACAATTAGTCGCGCGACTTAC AATTATGTTTTCCTGCCCCGCCCCCCCTTTCCCCCCGGTCGTTTCTCGTC CCTCTCAGTACATTCATCACCACGAGCTAGCAAAGTGGCAGCGCCAAGCC CACAACATGTGCGAAATCAGTGATTTCGCCACTCTGAGGACACATCAGCA GCAGCACTGCACTGCTGCAGCAGATAGACAGCAGACGGCAGACACGCGCC CCAGCGGGGGAGGCAACGATCAATCGCACCCATGACTCCTTGGCCGTGTA CATGTGTTTACATTATTTTTGTACACGATACGGAGCACACACATCCGGAG GGGGTACTGGATAGAGGTCGGAAGGATTGGAATTTCACAATAATTTCAAC ACGTGGTTTCGTCGCGGGTGCCAGATACTTCGGCTGTTGTTCTTGTTGTT TCTCACGCTTAGCTCACCATTAAAGTTTAGGACGTGGTCATAAACCAGGA ACATTTCATGCTATCATGGCAAAAAAATAATAATAAGTGAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig59:429640..431482-

>mRNA_P-littoralis_Contig59.72.2 ID=mRNA_P-littoralis_Contig59.72.2|Name=mRNA_P-littoralis_Contig59.72.2|organism=Pylaiella littoralis U1_48|type=CDS|length=939bp|location=Sequence derived from alignment at P-littoralis_Contig59:429640..431482- (Pylaiella littoralis U1_48)
ATGGACGAACGTGTCATGGGTTTGGCGAGGAGGTTCTGGCACTCTGACGA
TATTTCTCGTGCGTCGGGAGACTCCGGGACGAAAGCTATGTGGAGGCCGT
CCAAGAAGGCAGGGGAGGAGTATCACCCCCGTAGGCAGCTCATGGTTGCG
GGGGACCAAGTATGGCGCAAGTTTCTGAAGTGGCCGGAGTACTTGGGGCT
TAAGGCGGAGCTGCTGAGGGAAGACAGCAGCTTCACGGACCCTGGGCGGA
CGCTGTTCCTCTCGACGCGGTGTGGGTGTTTAGTGGAACCCAAGGTATCG
CAGTGTGCATGCCAGATCCACACGCAGCAGGGGCTGTACCTGAAGGCCTT
CGAGATGTTGATGCCTGCAATGCATGCCAACTGCGACTGCACGTGCAAGT
GGTGCGACGGGGGGAGTGGGTGTGGAAAGTGGATGGCCATGTGTAAAGAT
CTGCACAGCTTTTCAGAGGCTTTGGCTTGCGAAAAGGTAGACTTTCTTGA
GGAGGACCGAGGGGGTAGGTTTGAGCACTGGGGGAGGAAGCCCGCATGCG
TTGCGATGGAATGCTCCGAATGCGGGTTTGGCAACCCAGGTGGCATCCCC
ATGAACTGCGATGCCCTGGGGTCTATGGCGGACAGAGTAGTTGGGTGGCT
TCGATTCGAGGATCAAGTCATGGAGGATGGGAAGGTGCACAAGAAGCAGC
AGATACCCCAGGCCGGAAAACTGGACGACCTGTGGAAGGAGTTTGTGGAG
CACTCGAAGAAGTACATTCATCACCACGAGCTAGCAAAGTGGCAGCGCCA
AGCCCACAACATGTGCGAAATCAGTGATTTCGCCACTCTGAGGACACATC
AGCAGCAGCACTGCACTGCTGCAGCAGATAGACAGCAGACGGCAGACACG
CGCCCCAGCGGGGGAGGCAACGATCAATCGCACCCATGA
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