mRNA_P-littoralis_Contig59.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig59.6.1
Unique NamemRNA_P-littoralis_Contig59.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig59.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig59contigP-littoralis_Contig59:50467..51000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791213.404314-UTR-P-littoralis_Contig59:50466..504691680791213.404314-UTR-P-littoralis_Contig59:50466..50469Pylaiella littoralis U1_48UTRP-littoralis_Contig59 50467..50469 +
1680791213.4293256-UTR-P-littoralis_Contig59:50868..510001680791213.4293256-UTR-P-littoralis_Contig59:50868..51000Pylaiella littoralis U1_48UTRP-littoralis_Contig59 50869..51000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791213.4150672-CDS-P-littoralis_Contig59:50469..508681680791213.4150672-CDS-P-littoralis_Contig59:50469..50868Pylaiella littoralis U1_48CDSP-littoralis_Contig59 50470..50868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig59.6.1prot_P-littoralis_Contig59.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig59 50470..50868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig59.6.1

>prot_P-littoralis_Contig59.6.1 ID=prot_P-littoralis_Contig59.6.1|Name=mRNA_P-littoralis_Contig59.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MITWWVRCIEGMYEVHVLLYMYATGFYRCISAFHCHHCTPPAPPYFLFVA
RAGWVHHRAPHFLHSVCPTVVRGALKCFVRSMRVFTEEGGGGAVPVSAWR
GKRAPREHAFVNRLTEVPSREAIHIPVCVHPE*
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mRNA from alignment at P-littoralis_Contig59:50467..51000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig59.6.1 ID=mRNA_P-littoralis_Contig59.6.1|Name=mRNA_P-littoralis_Contig59.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig59:50467..51000+ (Pylaiella littoralis U1_48)
GAGATGATCACGTGGTGGGTGCGCTGCATTGAAGGCATGTATGAAGTACA
CGTTTTATTGTACATGTATGCGACGGGGTTTTATCGGTGTATTTCGGCTT
TTCACTGTCATCACTGCACCCCCCCTGCGCCTCCATATTTTTTATTTGTC
GCCCGCGCCGGTTGGGTACATCATCGAGCGCCACACTTCTTGCACTCTGT
CTGTCCGACAGTAGTGCGCGGTGCGCTCAAGTGTTTCGTGCGAAGCATGC
GTGTTTTCACCGAAGAAGGAGGGGGGGGGGCTGTCCCCGTGTCGGCTTGG
AGGGGGAAACGCGCTCCACGAGAACACGCTTTCGTGAACCGACTCACGGA
AGTTCCCTCACGGGAAGCCATACATATCCCGGTGTGCGTGCACCCGGAGT
AGGTAGAACTAGGGCGGGTGTACGCGTTTTTGTAAAATATTTTGTGGCGG
CGGCATTCAACTACTACGTCGATCAACGCGTTTTTTTTTGTTTTCAATAG
TAAATCACGCTACCCTCAATGTAAATCTTGACAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig59:50467..51000+

>mRNA_P-littoralis_Contig59.6.1 ID=mRNA_P-littoralis_Contig59.6.1|Name=mRNA_P-littoralis_Contig59.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig59:50467..51000+ (Pylaiella littoralis U1_48)
ATGATCACGTGGTGGGTGCGCTGCATTGAAGGCATGTATGAAGTACACGT
TTTATTGTACATGTATGCGACGGGGTTTTATCGGTGTATTTCGGCTTTTC
ACTGTCATCACTGCACCCCCCCTGCGCCTCCATATTTTTTATTTGTCGCC
CGCGCCGGTTGGGTACATCATCGAGCGCCACACTTCTTGCACTCTGTCTG
TCCGACAGTAGTGCGCGGTGCGCTCAAGTGTTTCGTGCGAAGCATGCGTG
TTTTCACCGAAGAAGGAGGGGGGGGGGCTGTCCCCGTGTCGGCTTGGAGG
GGGAAACGCGCTCCACGAGAACACGCTTTCGTGAACCGACTCACGGAAGT
TCCCTCACGGGAAGCCATACATATCCCGGTGTGCGTGCACCCGGAGTAG
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