mRNA_P-littoralis_Contig1152.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1152.9.1
Unique NamemRNA_P-littoralis_Contig1152.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1152.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1152contigP-littoralis_Contig1152:38078..38776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size326
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.5963697-UTR-P-littoralis_Contig1152:38077..381141680789474.5963697-UTR-P-littoralis_Contig1152:38077..38114Pylaiella littoralis U1_48UTRP-littoralis_Contig1152 38078..38114 -
1680789474.6239586-UTR-P-littoralis_Contig1152:38541..385471680789474.6239586-UTR-P-littoralis_Contig1152:38541..38547Pylaiella littoralis U1_48UTRP-littoralis_Contig1152 38542..38547 -
1680789474.6333826-UTR-P-littoralis_Contig1152:38751..387761680789474.6333826-UTR-P-littoralis_Contig1152:38751..38776Pylaiella littoralis U1_48UTRP-littoralis_Contig1152 38752..38776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.6062968-CDS-P-littoralis_Contig1152:38114..381551680789474.6062968-CDS-P-littoralis_Contig1152:38114..38155Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 38115..38155 -
1680789474.6152403-CDS-P-littoralis_Contig1152:38324..385411680789474.6152403-CDS-P-littoralis_Contig1152:38324..38541Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 38325..38541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1152.9.1prot_P-littoralis_Contig1152.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1152 38115..38541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1152.9.1

>prot_P-littoralis_Contig1152.9.1 ID=prot_P-littoralis_Contig1152.9.1|Name=mRNA_P-littoralis_Contig1152.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MQGSRYVALVPTSKVRHSYPSPSSMTCLSDAQQRRNPRRPERSSLPPRRS
PTHQHRWRHPTGGDTPLLRQPIAQRGPYSSAHLSG*
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mRNA from alignment at P-littoralis_Contig1152:38078..38776-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1152.9.1 ID=mRNA_P-littoralis_Contig1152.9.1|Name=mRNA_P-littoralis_Contig1152.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig1152:38078..38776- (Pylaiella littoralis U1_48)
AACGGCCACGCGGTTTGCCTCCGAGGTAAATACATATCGGCTATACAAAT
ACGTCCATTCAACCCTGTGTGCATCATGTTGTTAGTTCTTTTCGAGCCGT
TTGGCGGCCTGTGTGAAGCGAGGTTCATTACGACGGGCATAGTCGCACAT
CCCTATTTTTTTTGTGTCGCTATTTGACACCTGTCTGTCCGACTGTTTGT
TTTTCTGTCGGTCTGTCTGTCGGTCTCAGCGCATAATGCAAGGATCCCGC
TATGTCGCCCTGGTACCGACGTCAAAGGTGCGGCACAGCTACCCTTCCCC
ATCGTCGATGACATGTTTGAGCGACGCGCAGCAGCGAAGGAACCCGCGAA
GGCCAGAGAGGTCGTCGCTGCCGCCGAGAAGATCGCCGACGCATCAGCAC
CGGTGGAGGCATCCTACAGGCGGCGACACTCCGCTCCTTCGACAACCCAT
CGGTGAGAACGATCATTCGTTTCGCTCTAGCAGCAGCGTATCGGTACGAA
TGAGCTTCTGTTTTTTCCGCTTGTGCCCAAGCACAACAGCAGCACGATGG
AATCGCATCACGTCGGCGTCGGGTTGCCCAACACCTTCTCCGTGCTTCCA
CGTGTATTTTCCTCTTTATAGCGCAACGGGGCCCATATAGCTCGGCGCAT
CTCTCAGGGTGACCCGCTCAAATGTCATATTCAACACGGTGGAAAAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1152:38078..38776-

>mRNA_P-littoralis_Contig1152.9.1 ID=mRNA_P-littoralis_Contig1152.9.1|Name=mRNA_P-littoralis_Contig1152.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1152:38078..38776- (Pylaiella littoralis U1_48)
ATGCAAGGATCCCGCTATGTCGCCCTGGTACCGACGTCAAAGGTGCGGCA
CAGCTACCCTTCCCCATCGTCGATGACATGTTTGAGCGACGCGCAGCAGC
GAAGGAACCCGCGAAGGCCAGAGAGGTCGTCGCTGCCGCCGAGAAGATCG
CCGACGCATCAGCACCGGTGGAGGCATCCTACAGGCGGCGACACTCCGCT
CCTTCGACAACCCATCGCGCAACGGGGCCCATATAGCTCGGCGCATCTCT
CAGGGTGA
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