mRNA_P-littoralis_Contig1152.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1152.7.1
Unique NamemRNA_P-littoralis_Contig1152.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1152.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1152contigP-littoralis_Contig1152:33798..35228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size425
Hectar predicted targeting categoryother localisation
Exons3
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.4755104-UTR-P-littoralis_Contig1152:33797..338051680789474.4755104-UTR-P-littoralis_Contig1152:33797..33805Pylaiella littoralis U1_48UTRP-littoralis_Contig1152 33798..33805 -
1680789474.5153134-UTR-P-littoralis_Contig1152:35198..352281680789474.5153134-UTR-P-littoralis_Contig1152:35198..35228Pylaiella littoralis U1_48UTRP-littoralis_Contig1152 35199..35228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.4852993-CDS-P-littoralis_Contig1152:33805..338781680789474.4852993-CDS-P-littoralis_Contig1152:33805..33878Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 33806..33878 -
1680789474.493481-CDS-P-littoralis_Contig1152:34631..348081680789474.493481-CDS-P-littoralis_Contig1152:34631..34808Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 34632..34808 -
1680789474.506832-CDS-P-littoralis_Contig1152:35061..351981680789474.506832-CDS-P-littoralis_Contig1152:35061..35198Pylaiella littoralis U1_48CDSP-littoralis_Contig1152 35062..35198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1152.7.1prot_P-littoralis_Contig1152.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1152 33806..35198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1152.7.1

>prot_P-littoralis_Contig1152.7.1 ID=prot_P-littoralis_Contig1152.7.1|Name=mRNA_P-littoralis_Contig1152.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MQVVSGVLKALREDGGLAKNPYAKKLVGHEVVGQTLEATWPSNHAGIREA
SAIISWCASSSARLGTTSGVLVRDVKMDIASASTGVTLPQAGGTKRVQRL
ALRTKVKVFTSKHESHSAKDSPGVDHDR*
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mRNA from alignment at P-littoralis_Contig1152:33798..35228-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1152.7.1 ID=mRNA_P-littoralis_Contig1152.7.1|Name=mRNA_P-littoralis_Contig1152.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1431bp|location=Sequence derived from alignment at P-littoralis_Contig1152:33798..35228- (Pylaiella littoralis U1_48)
CCCCAATATAGTAGGTGCTCGAGGAGGGAGATGCAGGTGGTCTCGGGTGT
TTTGAAGGCACTGCGGGAGGACGGCGGCCTTGCGAAGAACCCTTATGCGA
AGAAGCTGGTGGGACACGAGGTGGTTGGCCAGACCCTGGAGGCGACGTGG
CCCTCCAATCATGCGGGGTGCGTATGTGTCGGTGTTACCCTGACCTGTGT
CGAATTGAGTCTTGATCCCACCTTTACACGTCAGGTCGGCCCAGTTTTTG
CGCATTTATTTTTCCTCCTTCCGTCCACATGATAGGTTATTTCTACCATT
CGTAATGGATGTTATCTTAAAAATCTCAGCACGGCAAGCATGTCTAATCT
CCCTTTGTTCGTTGTTGCGTGTCACCACATTTCATTTTCCTGTTGTCGCA
AAAAAAAAAAACGGGCGCAGTATTCGTGAGGCGTCCGCCATTATCTCCTG
GTGTGCATCGTCCAGTGCACGCCTGGGGACAACGTCGGGCGTGTTGGTCA
GAGATGTAAAGATGGATATCGCCTCGGCCAGCACGGGCGTGACTCTGCCA
CAGGCCGGGGGCACCAAGAGAGTCCAGCGGTTGGCGTTAAGGACCAAGTG
CGTATTTTCGTTTGGGTGATGCCGAGAGTATTTTGTACGTATGTTGTATT
TTGTGTTTTTAATGTTTCGTGCTGGAGGGACCGGTTTGTGGAGTAAGTCT
TGTTCTGCAAAGACAACAAAAACAAACCGGATAATAACCTTTGTCTGTTG
TCTGTCTTCGAGCGTACACCACAGGACTTGCTGCAGACGCCTTTGTCGCC
GATTTAGTTATCAAACCTGTCAACTTATACCGAAGAAGTTTGCATTAATA
TTCGAGACATCGCTCCGTTCTTCGATCGGCCACATTTCAACGTACGATAC
GAGTATAAAGAGTGGATGTGTGTGGCGCGCGCGCCGAGGATCTCAATATG
GAAACCTTGTCAGCGATTCGGCTTCATCCACAAACAGTGAGTTTTTCGTT
GACGTCGTATGTTTAATCGTGTAACCGAGAGATCATTTTAATCTTGTGGG
GTCGTCAACGTGAAGCCTCGCTTTGTTTACCTTCCTCCTTGGCCCATGTA
ACACCATCCCCATGCATCATAACGACACAACAAAAAGATGGCTCAGGAGT
ACTGCCTACGTAAACTTCTATGCCCGCCGTTGGGACAGCCGACATTCAGC
TCCTCTACCGAACGCGGAGAGTGCGCCAAGAAAAATCGGGATTTACAGAC
ACTTTCATTTTCCAGCCTATAATAGCGCGTGTGCGTGAGGATGTAACATC
GTGTGTTCCAAAACTTTCTTTGTTGTTGCCTTTTTTTTTTGTATGGCCAG
AGTCAAAGTATTCACCAGCAAGCACGAATCTCATTCCGCCAAGGACAGCC
CTGGGGTCGACCACGATCGATAGGCAGGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1152:33798..35228-

>mRNA_P-littoralis_Contig1152.7.1 ID=mRNA_P-littoralis_Contig1152.7.1|Name=mRNA_P-littoralis_Contig1152.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig1152:33798..35228- (Pylaiella littoralis U1_48)
ATGCAGGTGGTCTCGGGTGTTTTGAAGGCACTGCGGGAGGACGGCGGCCT
TGCGAAGAACCCTTATGCGAAGAAGCTGGTGGGACACGAGGTGGTTGGCC
AGACCCTGGAGGCGACGTGGCCCTCCAATCATGCGGGTATTCGTGAGGCG
TCCGCCATTATCTCCTGGTGTGCATCGTCCAGTGCACGCCTGGGGACAAC
GTCGGGCGTGTTGGTCAGAGATGTAAAGATGGATATCGCCTCGGCCAGCA
CGGGCGTGACTCTGCCACAGGCCGGGGGCACCAAGAGAGTCCAGCGGTTG
GCGTTAAGGACCAAAGTCAAAGTATTCACCAGCAAGCACGAATCTCATTC
CGCCAAGGACAGCCCTGGGGTCGACCACGATCGATAG
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