mRNA_P-littoralis_Contig1151.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1151.11.1
Unique NamemRNA_P-littoralis_Contig1151.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1151.11.1 vs. uniprot
Match: A0A534VCB2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534VCB2_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 3.640e-5
Identity = 44/131 (33.59%), Postives = 56/131 (42.75%), Query Frame = 1 
Query:   88 QGGNKLTCTAGDIEKADGVEAKLEVQDITTGCTGPDSTVTFTADLTYTVSGGATRYDIGLYVASDADADGD---VGNC---------------NIFSFGCQDTLPDDGDLCGD---RDGFNLEQGLEITVR 417
            Q G  L CTA DI+ A     +       T C     T +F AD   T +  +TRYDIGLY A+D D +GD    G C               N+ + G  D +  DGD C D     G+    G  +TVR
Sbjct:   41 QAGRSLVCTANDIQVAFADNVRDTSGTSLTQCIS-GQTFSFVADFHVTTTA-STRYDIGLYFATDGDPNGDGARSGVCSANIITPLHTDPASPNLVTLGSADAVNADGDTCRDVTTNAGWGKPNGKVVTVR 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1151.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A534VCB2_9DELT3.640e-533.59Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1151contigP-littoralis_Contig1151:44066..45679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons4
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.3886552-CDS-P-littoralis_Contig1151:44065..442161680789474.3886552-CDS-P-littoralis_Contig1151:44065..44216Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 44066..44216 -
1680789474.4006104-CDS-P-littoralis_Contig1151:44546..446211680789474.4006104-CDS-P-littoralis_Contig1151:44546..44621Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 44547..44621 -
1680789474.4116147-CDS-P-littoralis_Contig1151:45298..453601680789474.4116147-CDS-P-littoralis_Contig1151:45298..45360Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 45299..45360 -
1680789474.4251978-CDS-P-littoralis_Contig1151:45550..456791680789474.4251978-CDS-P-littoralis_Contig1151:45550..45679Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 45551..45679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1151.11.1prot_P-littoralis_Contig1151.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1151 44066..45679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1151.11.1

>prot_P-littoralis_Contig1151.11.1 ID=prot_P-littoralis_Contig1151.11.1|Name=mRNA_P-littoralis_Contig1151.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
YGLQEAHGAITCPEIFQTPGLCLSDNNELQGGNKLTCTAGDIEKADGVEA
KLEVQDITTGCTGPDSTVTFTADLTYTVSGGATRYDIGLYVASDADADGD
VGNCNIFSFGCQDTLPDDGDLCGDRDGFNLEQGLEITVR
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mRNA from alignment at P-littoralis_Contig1151:44066..45679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1151.11.1 ID=mRNA_P-littoralis_Contig1151.11.1|Name=mRNA_P-littoralis_Contig1151.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1614bp|location=Sequence derived from alignment at P-littoralis_Contig1151:44066..45679- (Pylaiella littoralis U1_48)
TATGGACTGCAAGAGGCGCATGGTGCCATTACGTGCCCCGAAATCTTCCA
GACCCCTGGGCTGTGCCTCAGCGACAACAATGAATTGCAAGGAGGAAACA
AGCTAACGTGCACTGCGGGTGACATCGAGGTGAGGTCGGCATTTCATTGG
ACTACACAACGCCCTTTTCCGACTGTTTATATGCAGATGGTTGCTTAGTT
CACCGCTTTTCTGTTTCCGGACAAACCGCATCAACATGGAGCCGTTTCCC
CTTCTTATTCCGTGTCCACGCGTTCCGCACTCGCCTCTCCGTTTGTCACC
TCTATCCGTTTGTCCTCAGAAAGCGGATGGAGTTGAGGCAAAGCTCGAGG
TCCAAGATATCACAACTGGCTGCACCGGACCGTGAGTCCCCCACAATGTT
CGACGCCATCCTATTTTCACGGATCAGATTGTTATTCATATATTTCTGGT
TCAGGCGAGAGAATGAATAACTTGTCTGAACGCTTGTCAAAAGCCGCAGA
GACAGTCTTCGACGTTGGAAAACCTACACGACGAATAAAAAATCAAACGC
TGTGTACCTACCCAAACTTCAGCCTCGACCGCAGTTGCCGCAACACTGAC
ATGTACGATACATTGGATGCGTATCTGTCTTGCCGAAGTCCTTGCTGTAT
GGCAACGTGTGTTTGCCGGCCGCGCTCGCGCGTGTTTGTTACGGGCAATA
AACAGGGTTGTATTGGTCGGGCCTTTTACTCGGGGGGGAGGGGCTGTGTT
CAGATTACCTTGTGGATCAACCCCGCACAGGATTTGACCTTGCATGTCTA
AAATATCAACAGCGTCGAGAGAGCAAGTATGACATGAAGCTCGGCTTCGC
ACGGTCATGATCAAATTTAAGGAACTGGCCCGATTTCACGAAGCGAGTAG
AACCCAATACTTCGAAGTATTTGGTTTGGCAATTTGCTCTTGTTCATTTT
TTGGCGTCCAATAACAGCCAGTTTCTTGCGCAATCTCTCTGATTAAGCTG
AGGTGGTATTGCCTTTCCCCCTGTCCGTTTTGCATTCAACGCGCGCCCAT
ACTGTCAGGGACTCCACTGTCACCTTCACGGCCGACCTCACCTACACTGT
CAGTGGAGGTGCTACGAGATATGACATCGGCTTGTAAGTTTCGATGGGGC
TTGTCTACGTGCCTTAGTCTTTCTTTCGAGACTAACAGCAGGCAAGGCGT
TGGCGTTGGCGGTTTGATCGGAGAGCCACTCACTTGAGGATTCTCATTGA
AGACGGGCGCTAAGAGCGTATATGTCGCGGAGGCCAATCTCAACAATACA
CGTCCTCTTTTTTGTCAAAACACAAACAGCGACGTACTTGTTTCGCTCTG
AAGCTGTCACCATCGAAGGAATGTCATGTGAACGTCCTCTTGCATGTACG
CGATGCTGCCCACAGCAAATGAGACTCAGCGCTTCGCAACCAACTACCGT
GCCCGCCCGCCAGGTACGTTGCTTCAGACGCCGACGCGGACGGGGACGTC
GGCAATTGCAACATCTTCAGTTTCGGGTGCCAAGACACCCTTCCTGACGA
CGGCGATCTTTGCGGTGATCGGGATGGTTTCAACCTTGAGCAGGGTCTGG
AGATCACGGTGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1151:44066..45679-

>mRNA_P-littoralis_Contig1151.11.1 ID=mRNA_P-littoralis_Contig1151.11.1|Name=mRNA_P-littoralis_Contig1151.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig1151:44066..45679- (Pylaiella littoralis U1_48)
TATGGACTGCAAGAGGCGCATGGTGCCATTACGTGCCCCGAAATCTTCCA
GACCCCTGGGCTGTGCCTCAGCGACAACAATGAATTGCAAGGAGGAAACA
AGCTAACGTGCACTGCGGGTGACATCGAGAAAGCGGATGGAGTTGAGGCA
AAGCTCGAGGTCCAAGATATCACAACTGGCTGCACCGGACCGGACTCCAC
TGTCACCTTCACGGCCGACCTCACCTACACTGTCAGTGGAGGTGCTACGA
GATATGACATCGGCTTGTACGTTGCTTCAGACGCCGACGCGGACGGGGAC
GTCGGCAATTGCAACATCTTCAGTTTCGGGTGCCAAGACACCCTTCCTGA
CGACGGCGATCTTTGCGGTGATCGGGATGGTTTCAACCTTGAGCAGGGTC
TGGAGATCACGGTGCGT
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