mRNA_P-littoralis_Contig1151.8.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: A0A6H5K213_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K213_9PHAE) HSP 1 Score: 166 bits (420), Expect = 2.050e-45 Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 2
Query: 380 SCDSPPLNLIDGIAASRWGWYIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQYTRTDVAAGSYYVIVHVGFACSPCG 772
SC SPPLN I+G+ A+RWGWY+E FDST Q FTFDMYAGAG N+L+ G AG++VV V DGSS D P YCFDD+HVHVG LPT+ K + +VAPGQY+++ + G +Y+IVHVG C+PCG
Sbjct: 8 SCLSPPLNGIEGVTANRWGWYLESTFDSTDQSFTFDMYAGAGQNDLSSGALAGNVVVNVIQDGSS-DYTVHPADGYCFDDVHVHVGNELPTKTKKSVTTPTVAPGQYSQSTLGVGDFYIIVHVGETCTPCG 137
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: UPI00041CBC08 (hypothetical protein n=1 Tax=Salinimicrobium xinjiangense TaxID=438596 RepID=UPI00041CBC08) HSP 1 Score: 67.4 bits (163), Expect = 3.800e-8 Identity = 41/131 (31.30%), Postives = 59/131 (45.04%), Query Frame = 2
Query: 413 GIAASRWGW--YIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQYTRTD-------------VAAGSYYVIVHVGFAC 760
G+ A+RWGW + E FD + ++AGAG NNL +G Y G +++T+ G P FDDIHV+VG T+ +APG + TD ++ VH+G AC
Sbjct: 401 GLTATRWGWTEHFENEFDGADGEKVYQIWAGAGQNNLDKGYYVGQVILTIT--GGQVSLNIVPFTGNQFDDIHVYVGASAQTE---------IAPGVFDNTDGDGLTYVEGDDFAEVGNDFWFTVHIGDAC 520
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: A0A2T4X4B1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4X4B1_9BACT) HSP 1 Score: 62.8 bits (151), Expect = 4.430e-7 Identity = 51/179 (28.49%), Postives = 83/179 (46.37%), Query Frame = 2
Query: 344 GCASVIGQGEDAS-CDSPPLNLIDGIAASRWGWYIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGS-SEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQYTRTDV--------------AAGSYYVIVHV---GFACSPCGISA*ELKSSYSSRILVR 823
GC + E S CD L ++RWGWYI P+ + T T+++YAGAG ++ +GE G++ V DG+ S + AF +G Y F + H++VG+ + + +VAPGQY ++ +G Y+I H F C + A L S ++ ++
Sbjct: 28 GCETAFAYYEKGSFCDDNDLK------SNRWGWYIGPLSEGTND--TYEIYAGAGKCDINKGELVGTLDVNYGEDGNLSVNYNAF-DG-YGFFETHLYVGE--EKYPRKRNGEYTVAPGQYGNSNSFPDGSSSDSFEFEDLSGGIYIIAHAVVCDFEEEKCEVDAGSLIPD-SEKVCIK 193
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: UPI00162754E2 (hypothetical protein n=1 Tax=Fulvivirga kasyanovii TaxID=396812 RepID=UPI00162754E2) HSP 1 Score: 61.2 bits (147), Expect = 1.980e-6 Identity = 35/125 (28.00%), Postives = 61/125 (48.80%), Query Frame = 2
Query: 338 AYGCASVIGQGEDASCDSPPLNLIDGIAASRWGWYIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQYTRTD 712
A+G V G +++ P + +RWGW D T +TFD++AGAG NN A G + G++ + + ++ ++ Y ++H++ G F+PT ++APGQY T+
Sbjct: 204 AFGTGFVFTTGNNSN---PEWYSTLALTKNRWGWAGNFTADGT---YTFDVWAGAGLNNTANGTWVGTLTIMKSG---NDVTVSYNMSGYSMQEVHIYAGDFMPT---------TIAPGQYGYTE 310
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: UPI001D0CD32F (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella sp. E313 TaxID=2816852 RepID=UPI001D0CD32F) HSP 1 Score: 61.2 bits (147), Expect = 4.070e-6 Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 2
Query: 425 SRWGWYIEPVFDSTQQV--FTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVG---QFLPTQGKGKKASISVAPGQYTRTD 712
SRWGW FD+ Q + + D+YAGA G N+A G+ AG++ + N SS EG + H++VG Q PT G S +VAPGQYT D
Sbjct: 481 SRWGWTNSIYFDAEQGLTSYAMDIYAGASGCNIANGDDAGTVNIEYNEYDSSITFNYNLEG-FALSQAHIYVGPCEQPYPTNG----GSETVAPGQYTFVD 576
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: UPI000427F7D8 (hypothetical protein n=1 Tax=Geothrix fermentans TaxID=44676 RepID=UPI000427F7D8) HSP 1 Score: 56.6 bits (135), Expect = 5.890e-5 Identity = 44/136 (32.35%), Postives = 60/136 (44.12%), Query Frame = 2
Query: 323 EPCDTAY--GCASVIGQGEDASCDSPPLNLIDGIAASRWGWYIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQYTRTDVAAG 724
E C TAY GC + + P LNL +RWGW I+ + T+ TFD++AGAG NN A G G++ V + + G Y + H+ G PT ++APGQY TD G
Sbjct: 194 ECCATAYAKGCYVWTTDRKSNPENLPSLNL----TRNRWGWAIKLLTPGTR---TFDLWAGAGLNNTANGVKVGTVTVAWDGTNVTVTYTITVSG-YHLKEAHLFAGDDAPT---------TIAPGQYGNTDYLFG 312
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: A0A1M7D0L9_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium saccharophilum TaxID=29534 RepID=A0A1M7D0L9_9FLAO) HSP 1 Score: 56.2 bits (134), Expect = 7.460e-5 Identity = 42/146 (28.77%), Postives = 71/146 (48.63%), Query Frame = 2
Query: 374 DASCDSPPL---NLIDGIAAS-RWGW--YIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQY--------TRTDV------AAGSYYVIVHVG 751
+ +CD+ + N +G+ S +WGW + V + + +T+++YAGAG N++++G AG++ V V S A G F + HV++ +PT + APGQY T +D GS+++IVH G
Sbjct: 194 ETTCDTAYMFGNNTFNGLGLSEKWGWVTFYSNVVNGS---YTYNLYAGAGQNDISKGYLAGTVTVNVQGSNISITINATHPGT-VFTETHVYLSDAIPT---------TAAPGQYGNQHSLNNTTSDTYNLTYSGDGSFWLIVHAG 326
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Match: J1KVN6_9FLAO (Uncharacterized protein n=5 Tax=Flavobacterium TaxID=237 RepID=J1KVN6_9FLAO) HSP 1 Score: 55.8 bits (133), Expect = 9.930e-5 Identity = 43/153 (28.10%), Postives = 65/153 (42.48%), Query Frame = 2
Query: 380 SCDSPPL--------------NLIDGIAAS-RWGWYIEPVFDSTQQVFTFDMYAGAGGNNLAQGEYAGSIVVTVNSDGSSEDPEAFPEGDYCFDDIHVHVGQFLPTQGKGKKASISVAPGQY--------TRTDV------AAGSYYVIVHVG 751
+CD+PP N + + S +WGW + + T +T+++YAGAG NN+ G AG++ V + A G F + HV++ PT + APGQY T TD GS+++IVH G
Sbjct: 185 TCDTPPPPPVTTCDTAYMFGNNTFNSLQLSEKWGW-VTSYSNVTNGTYTYNLYAGAGQNNINNGYLAGTVTVVIQGSNVQVTLNATHSGT-VFTESHVYLSDSPPT---------TAAPGQYGNQHTLNNTTTDTYNLTYSGDGSFWLIVHAG 326 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1151.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1151.8.2 >prot_P-littoralis_Contig1151.8.2 ID=prot_P-littoralis_Contig1151.8.2|Name=mRNA_P-littoralis_Contig1151.8.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp MDDFSGCDAGFSLIDPAVECVDAACTNAICCDQDTCDDMDDFSGCDAGFSback to top mRNA from alignment at P-littoralis_Contig1151:35664..40521- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1151.8.2 ID=mRNA_P-littoralis_Contig1151.8.2|Name=mRNA_P-littoralis_Contig1151.8.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4858bp|location=Sequence derived from alignment at P-littoralis_Contig1151:35664..40521- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1151:35664..40521- >mRNA_P-littoralis_Contig1151.8.2 ID=mRNA_P-littoralis_Contig1151.8.2|Name=mRNA_P-littoralis_Contig1151.8.2|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig1151:35664..40521- (Pylaiella littoralis U1_48)back to top |