mRNA_P-littoralis_Contig1151.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1151.6.1
Unique NamemRNA_P-littoralis_Contig1151.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1151.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1151contigP-littoralis_Contig1151:29955..30589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size509
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.0502083-UTR-P-littoralis_Contig1151:29954..300481680789474.0502083-UTR-P-littoralis_Contig1151:29954..30048Pylaiella littoralis U1_48UTRP-littoralis_Contig1151 29955..30048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.061635-CDS-P-littoralis_Contig1151:30048..301631680789474.061635-CDS-P-littoralis_Contig1151:30048..30163Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 30049..30163 -
1680789474.0748622-CDS-P-littoralis_Contig1151:30290..305891680789474.0748622-CDS-P-littoralis_Contig1151:30290..30589Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 30291..30589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1151.6.1prot_P-littoralis_Contig1151.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1151 30049..30589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1151.6.1

>prot_P-littoralis_Contig1151.6.1 ID=prot_P-littoralis_Contig1151.6.1|Name=mRNA_P-littoralis_Contig1151.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
NVCPAGPIARARACRKTRNKNALASIASHRTRILLTSTIGSSGAWCTESS
AKLGGSGTYVFFVRTPLCLFNYFLQQADWTLLPVHETLFPSYIILKDTHR
QIRPYSLSALNYCENTGTGDWPLLLVRETLFPSYIIL*
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mRNA from alignment at P-littoralis_Contig1151:29955..30589-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1151.6.1 ID=mRNA_P-littoralis_Contig1151.6.1|Name=mRNA_P-littoralis_Contig1151.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=635bp|location=Sequence derived from alignment at P-littoralis_Contig1151:29955..30589- (Pylaiella littoralis U1_48)
AACGTGTGTCCCGCGGGACCTATAGCGCGGGCGCGGGCATGTAGGAAAAC
AAGAAACAAAAACGCCCTGGCCTCAATCGCTTCCCACCGGACGCGTATTT
TGTTAACGTCAACCATCGGCAGCAGCGGCGCGTGGTGCACTGAATCCAGC
GCCAAACTTGGCGGCAGTGGAACTTATGTTTTTTTTGTACGAACACCTCT
TTGTTTGTTTAATTATTTTCTCCAACAAGCAGATTGGACCCTACTCCCTG
TCCACGAAACCCTATTCCCTTCCTATATTATTTTAAAAGACACGCATAGG
CAGATTCGCCCCTACTCCCTGTCTGCTCTGAACTATTGTGAAAATACAGG
CACAGGGGATTGACCGCCTCTACTCTTGTCCGCGAAACCCTATTCCCTTC
CAATATTATTTAAAAGACACGCAAAGGCAGATTCGCCCCTACTCCTTGTC
TGCTCTGAACTATTGTGAAAATACAGGCACAGGGGATTGGCCTCTACTCC
TTGTCCGCGAAACCCTATTCCCTTCCTATATTATTTTATAAATGCACACA
GCGGATTGGCCCATACTCCTTGTCCACTAACCCTAACTCCTTCCTATATT
ATTTAAAGAATGCACGCACAAGCGGATTGCCCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1151:29955..30589-

>mRNA_P-littoralis_Contig1151.6.1 ID=mRNA_P-littoralis_Contig1151.6.1|Name=mRNA_P-littoralis_Contig1151.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig1151:29955..30589- (Pylaiella littoralis U1_48)
AACGTGTGTCCCGCGGGACCTATAGCGCGGGCGCGGGCATGTAGGAAAAC
AAGAAACAAAAACGCCCTGGCCTCAATCGCTTCCCACCGGACGCGTATTT
TGTTAACGTCAACCATCGGCAGCAGCGGCGCGTGGTGCACTGAATCCAGC
GCCAAACTTGGCGGCAGTGGAACTTATGTTTTTTTTGTACGAACACCTCT
TTGTTTGTTTAATTATTTTCTCCAACAAGCAGATTGGACCCTACTCCCTG
TCCACGAAACCCTATTCCCTTCCTATATTATTTTAAAAGACACGCATAGG
CAGATTCGCCCCTACTCCTTGTCTGCTCTGAACTATTGTGAAAATACAGG
CACAGGGGATTGGCCTCTACTCCTTGTCCGCGAAACCCTATTCCCTTCCT
ATATTATTTTATAA
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