mRNA_P-littoralis_Contig1150.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1150.6.1
Unique NamemRNA_P-littoralis_Contig1150.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1150.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1150contigP-littoralis_Contig1150:22155..28106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.79e-21
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size426
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.9054832-UTR-P-littoralis_Contig1150:22154..221781680789473.9054832-UTR-P-littoralis_Contig1150:22154..22178Pylaiella littoralis U1_48UTRP-littoralis_Contig1150 22155..22178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.9191813-CDS-P-littoralis_Contig1150:22178..222231680789473.9191813-CDS-P-littoralis_Contig1150:22178..22223Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 22179..22223 +
1680789473.9328127-CDS-P-littoralis_Contig1150:22321..224441680789473.9328127-CDS-P-littoralis_Contig1150:22321..22444Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 22322..22444 +
1680789473.940971-CDS-P-littoralis_Contig1150:22560..227351680789473.940971-CDS-P-littoralis_Contig1150:22560..22735Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 22561..22735 +
1680789473.953804-CDS-P-littoralis_Contig1150:28023..281061680789473.953804-CDS-P-littoralis_Contig1150:28023..28106Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 28024..28106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1150.6.1prot_P-littoralis_Contig1150.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1150 22179..28106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1150.6.1

>prot_P-littoralis_Contig1150.6.1 ID=prot_P-littoralis_Contig1150.6.1|Name=mRNA_P-littoralis_Contig1150.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
MKDCWMAQTITFRNKVTMALTLPTTRSLCEALGTVLYTTVATDVFTGSRF
KGQPIKAHDPANPWPNGLREGTKNLEESKTEHLPRVVCLGIGLPIVLSKP
TDQLVGLGICNNSDDIAGEALLCLAAGQLPAHGPVRVLRPRT
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mRNA from alignment at P-littoralis_Contig1150:22155..28106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1150.6.1 ID=mRNA_P-littoralis_Contig1150.6.1|Name=mRNA_P-littoralis_Contig1150.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5952bp|location=Sequence derived from alignment at P-littoralis_Contig1150:22155..28106+ (Pylaiella littoralis U1_48)
GACGGAACGCGAGACACACTCGGCATGAAGGACTGCTGGATGGCCCAGAC
GATTACCTTCAGAAACAAGGTGATGTCTGCGAATTGTCGCCTCTGCGATC
CCCGTCTAAACTGTATTCGTCTCGTTCATTTTTTTGTGAGCCTCAACGTT
CGACTCTTGCATCTCAGGTTACAATGGCGTTGACCTTGCCCACGACTCGG
TCTTTGTGCGAGGCGCTAGGAACTGTGCTGTACACTACCGTCGCCACGGA
CGTGTTCACCGGATCGAGATTCAAGGGACAGCCCATCAAGGTGCGGGTGA
TACAGCTTCCTACGGATAATACCGCGTTTGTATCCATCTTGCAGCAATTC
GCTTCGTCCACGCACCTCTACTTCAACGTGCCCGTCCTACACGTTCGTGC
TGGCAGGCTCACGACCCTGCTAATCCTTGGCCTAACGGCCTGAGGGAGGG
AACGAAGAACCTCGAGGAGTCCAAGACAGAGCATCTGCCTCGGGTCGTGT
GCCTTGGGATCGGTCTGCCCATCGTGTTATCCAAGCCAACTGACCAACTT
GTTGGCCTCGGCATTTGCAATAATTCCGACGGTGAGCTCGAGTCGAGTGG
TTGTGCTGCTATCTTCCTGTTTTAGGTGTGCATTGCCTACCCTTTACTGT
TGTCTCTGTTAAACTCTCGCATCTTCGCAGGAGTTATCGTTTCCGTCGAC
CTCGACCCACGCGAATCTGTCACTGACGAGGGTGGAGGTTACCGTGTGGT
GGAACTTCGCTTCCCTCCCGTCAGAGTCGTCATCTTCCTCCAAACAGCGT
ACGACGCCGGTGTTCAACTTCCGGGACTAGCTCGAGGAGAGATCGCAGTC
GGCGCTGAGACCAGATCGTACACAGTATCTGGCCTCCACGATCGGAAGTT
TTTCGTGAAAAGAATCCAGATTCCGCTCTTGCCTGGTCATCTCTCTTCGG
TTTATCGAGCTCAGGTGCGGTTCTTCTCTTTAGATTCCGTCGCGCGATGT
TCATCGCCATCCCGTCGCGTCATGTCCTCGTCCTTGTTTCAACCAAATCT
CGCATCACTGCGTGCGCTATCTATCTCCTCTGATACAGGGCGAGACGATC
GAGTATCTCCTACTCCACATGACGAGACCTGTTGATGGCTTCCTCGACAA
CTCCGCGGCTTACGTCGCTTTATCCCGCGCAACGTGTCTTGAGAGACTGT
TCCTTGTGGCGGCGATAACCCTGAGCGACATCCAGTGCAAACCGAAACCA
GATCTATCCGCTGCGTTGGCTTGGCTAGATAAACTAGATGCGGCTAGCCA
ATCTGCCTTCTTCAGGGATCCTTCGACTTTCAGCCCCGTCGTCGTCTCGT
CTCCGCACAGCGGGGTCGGCCTCGGCTTACCTGGTGTCCAGGGGGAGGGT
GACGACGAGAGCGACAGCGACGACGAACCCGTGCAGGACCTTCATTTCGC
TCCTAACAGCCACTCGAACTGCTTTCACAACGTCGCCATGGCGGCCATGC
TCGCGGCTTTCGACGGCCAGCCTCTGCCTGAGAGATCATCTTGCACTCCC
TCTGCGTCGGTCTTCTACGATGCCATCGGGGCCGTGCGCGACAGCATGTA
CTGTGGCACCGCCCTTCCGCCTTCCATTTTGGTAAGTACCGATGCCTGGG
TCATTTTCGCTATCCTAGACACCTTCGACCACCGCACCTTTGGCGCATTT
TTAATGGTCTCCTTTTCTGTGCGTACATGTTGAAGGCGACCCTGGCTGCG
GCTCGGAACACTGTCATGACGAACGCCGGATTGCCTGGTTCCGGTTGCGC
CATGGGAGACGCCGCTTCCGTGTTCGAGTCACTGTGCCAGCGCCAACGCG
ACTTCTTCCCGGTTTCGTCGTGGCCGGCAACGCTCGAGGGCAGACGTGCC
CTCGTCGCTTCCACGCGCAAGACCCTCGGCATGGACTGGAGGGGTCGTGT
GACTTGCCCGACAGACGATCACGCTCTGCGGGAGGTTTGCCCTCTTCAAT
CCGCCGCGATGCGTGACCCAACAGTGTTCACTATTCCCCACGGCCAGCCT
CGAACCCTGCAAGACGCGTTGGCCGACTGCTTCCTCGGCGGGAGTAGCAT
CGACTTCACCAATCCCTCCAACATCGCGTGCCCAGCGTGTCAAGTTCTAG
GGCCTCATACTACCTGGCAATACTTGCCTTGGACGGACGGCAATGCACCG
GATAGGTTGTTCTTCGCCTCGGCAAGGCTCGACTGGGATCTCGCCGTCGG
TGCGCCTCCAACACCATCACCCACTTTAAACTGTGGTGCTGCCTACACGC
TGGTTGCTGTAGTGTATCACGTCGCCGTCTACGGCGGTAGAGACGCGGTT
GAGGGCGAGGTGATTGATGACTACATCGTTCGCAACAATCACTACGTCAC
CCAGATGTTGCTGCGCGGGAAATGGGTTCTGTATGACTGCATGCTGGGTG
GCAAGACTTTTCCGTGCCCGACTTTTCAGCACGGTTGGCACCCGGGCAAA
GAGTCTATGTACGTGTACCTGAAGGATGAGTTGGTGGCTCCTGATCCTTC
TGTAGGCACCCCGTACCGTAGCATGGTGGCGATTAGGGCAGGAAGCGCAG
ACTCAGGCCACCATGACTCTGTCAGCAGAGCGTCAGGTGCTCCTATTGCG
TGTGGTGGTGCTATCGACGATTTCGTGCCGTTCCGTAACTCGGTGAGTAG
GTCACAGAGGTAATCTCGTGGTGTGTTGATTTTCCGGCACCGAATCAGAG
CATGCTTTTGAACATCGATCTTCCGTTCCGTCATTTCATGCAGTAAAAAC
CAGACCCGCGAGTACGTTTGCCTATTTGAGGCTTGTATTCCGCCATTGCC
CCCGTCTCTCGACTTGTGCCACACGTGTCGACTTAAACCGCAGCTAGCTG
TGCCATCTGCTGCCGCTCGCTTAATTCAAAAACATCACTTATCCACGCCT
GGTCTTTTCCTTCTGCTTCGGCCTTCAACCTCGACCGCCGCGTCCCTTCG
ATTCTTCGTCAACGACTACCACCGTTCTCAGCTCGCAATGCTGCGTCATA
TTCATCGTGTATGCTGCATTCTCTCTCCCTAGTCTATGCTGGTCTATATG
TAGCGCTCGAAGTCAAACTCGTCGTCCACGAATTTCTCCCACATTCGCAG
CTTGCAGACAAAGTGCGTCGGCGGTGCCATGTTTGCGGCATTCTTTGCAA
AGACCTTCTGTCCCGCCAGAATACGCTCCGAGCCCTGCGGGTCCCCGTCC
TTGTGCACGTCGCCATGGCACCTTTGTCCAACCTGTTCAATGCCGCGCGT
GGAATCGTCAGACAATAACTCTGTGTTCTGTACACGCTACGACCTTCGCC
CACGATGATCTCAGCCACGTGATTGCAAGAATTTTTCCGTGTGCGTCATG
GTTCTTTCTCCATGCTATGCCTTCGCCGCCGTCTCACCTCAATAGGGTCG
GCTACGCGAGACATGCTCTGGCGACCATTTCCGCCGACGTTCCCCAGGCA
GTCCGCGAGATCGACATGTGCATACAGTTCCCACATGCTCGGAGAGTGCC
GCCCTGCGGCAGTTTCCATTCAATCGTGTCAATATTTTTAAAATCTAGGC
TGTCTCCTAATCAGATCTTACTACTAGACTAGACTATCTAGTCTACATCA
AACAACTCCCTTGTGTCTAAATTCTTCGTGTTCTCGTTTCGGTTTGTCTC
CTCGAGCCTGCTCACCGTAGTAGCGACAGTATACGGCAGGTTCGCCAGAT
CGTATCGTCTTCTGGCATGCCGCACATTGCTGCACCTGTTGCGTCACCTT
CCCGGTCCATCCGCATTGGTCTACATGTAGACACATCGGTAACAGATCTG
CAGGGTCTTCGACGAGCGGAGCCATATACATGCTGTCGTCTTCGCATCTA
GGGCATGTTGTCGGATAGTGTCCTGCTTGGAGCATTTCGTGAACTGTGTG
CCCACCTCGTCTCCGGTACCCTCAGTTCTCTCTCACTAGCGTACGGACTT
TTTTGCACCGCGCATCCGTTGTGAGACGCCACTGCAAACGCGGTGTAATC
ATCACCAGTATTTATTCCGAACAGACCGCTGTATGTAACCCCCTGATTTT
TTTTTTGTTTTTTTATGTTGTTTGCGGTCGCATCTCATGTGTTTCGCCGC
GTTCTTTGGATATGTGTAACCGACCACGTCCCTCGATTTCCCGAGCCTGC
CCTCGCACTATCACTCTCTCCCCATCCCGGTTCCCAACATGCCCAAATCC
AAGAATACGTCAAGCAATGATGGTGCCGCGTCGGCCGCGGTTCCTGCTGC
TCCTGCTGCTTCTGCGGGAAAAGCAAAAGCGTTGTCTACCGCCGAAAAGA
TGGTCGCGCTGATGGCGCAGTCAATCGCGACCTCGAAGACGTCCAAGACG
TCTTACAAAAAGGACAAGCTCGACCCCGCCGACGCCACCGGGGAGGTGGA
CGCGACCATCTCGCAGTGTCTCTGGTGCTTCGTCGATCTGACGAAGACCG
GCAGAAAGCCGGTGAACGCCACCGGCGTCGTGTGAGTACCTCTTCTCCAG
CCTTGTCTTCGTTGTTCATGGTTGGTTGCGTTCGACGTGTCTTCTTCTTG
ATCCCCGCATTTTCATCTTGCGATTCCCGATTTTCCTCGGAAGCTTTGTG
TTGTACTACCTACGACGCGCTACCCCGTAATTGCGTGAGCGTCCTCTGTG
CCTATAGTCTATGCTGCGGTCTCATCATCGCTCTCTCATTCATCCGGTGT
GACCATCATCACCCCTGGCTGCTATTGCTAGACACAGCGGTTATTTTTTC
GCTAGTAGTGTTGATTCTTCGATCTGGAACTGTCATCCTGCACACACCTT
GTCTCAGAATAACACTTTTCTCTCTAAACCTCCATCCTTTATCCCGCCGT
ACAATCGATCATCACTGGCCTGCGGGAAGACGGGAAACCCGGCCTCACAT
GCTGACCCTTCTCTCCTCCTCAATGTCTTGCCCTTTTATCCCGAAACTCT
TCTCTATTACGGTCAGTTGCGACTGTGGCAATTGGACCAATTGTTCGATG
TCCGCCGCAAAAGCGGCGGAGAAAAACATGACAGGCATCGACTGCACAGT
GTGTGCCGGACAGGTGATCTCCTTCGGCCTGTGCTTTTCGTGCGCTTTTT
CATGCCTTTCGGTTAACTTCCCGCGCCCTCGATCCTCGTCGTTCTTCGTG
CTTTGCAGATTTATGATTCCGTATAGACTATATATATTGGTTAGACTAAT
GCCTCTAGGGTAGGTGTAGGGTTCTTGTTTTGAATATACATGCGACTTCC
AGCGTTGTTCCAGAACCAGGCCTGCTGACGGCAGCGAGTCTAACTCAATT
TTTCCAGTCATCGTCTGTGCGTGCGGCCAACTCGCGTTTTATCATACTCT
GTTCTTCGGCTCCTCCTGCGGAAGTATTTATGATTGCGTATAGACTATTC
TAGTCGGACATAATAATGTGATAAATTGGTTAGACTAATGCCTCTAGGGT
AGGTGTAAGGTTCTTGTTTTGAATGTACATGCGACTTCCAGCGTTGTTCC
AGACCAGGCCTGCTGACGGCAGCGAGTCCAACTCGATTTTTCCAGTCATC
GTCTGTGCGTGCGGCCGACTCGCGTTTTTCATACTCTGTTCTTCGGCTCC
TGCGGAAGTACGCCGCGATCTATGTAGTCTATACTCTTCCTCCCCTCACG
TCCTAGTATGCGACCACGTTCGTTCATGTCCCTCTTCCTTCTCGCACCGT
GCTTCCTCCACCCTCGGTCTTCTTCTTTCGTGTTCTCCAATCTCGTGCTC
ATTCCTTCGCATCCGTCTTGCTTCATCCGCTATCATTTCTCTTCTTCTAC
TCTCGTCCCTTTTCCACAGATATCGCCGGAGAGGCCTTACTATGTCTGGC
AGCAGGGCAACTACCTGCACACGGACCCGTCCGAGTGCTCAGGCCTCGAA
CT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1150:22155..28106+

>mRNA_P-littoralis_Contig1150.6.1 ID=mRNA_P-littoralis_Contig1150.6.1|Name=mRNA_P-littoralis_Contig1150.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig1150:22155..28106+ (Pylaiella littoralis U1_48)
ATGAAGGACTGCTGGATGGCCCAGACGATTACCTTCAGAAACAAGGTTAC
AATGGCGTTGACCTTGCCCACGACTCGGTCTTTGTGCGAGGCGCTAGGAA
CTGTGCTGTACACTACCGTCGCCACGGACGTGTTCACCGGATCGAGATTC
AAGGGACAGCCCATCAAGGCTCACGACCCTGCTAATCCTTGGCCTAACGG
CCTGAGGGAGGGAACGAAGAACCTCGAGGAGTCCAAGACAGAGCATCTGC
CTCGGGTCGTGTGCCTTGGGATCGGTCTGCCCATCGTGTTATCCAAGCCA
ACTGACCAACTTGTTGGCCTCGGCATTTGCAATAATTCCGACGATATCGC
CGGAGAGGCCTTACTATGTCTGGCAGCAGGGCAACTACCTGCACACGGAC
CCGTCCGAGTGCTCAGGCCTCGAACT
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