mRNA_P-littoralis_Contig1150.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1150.5.1
Unique NamemRNA_P-littoralis_Contig1150.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1150.5.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.420e-25
Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 2 
Query:    5 RSTTMRLNIKGMLRQRHAADEEMVRRAEEA-----RANAAAGRGGAFSDDEGEIINAACDEDDAEGSNVMPPTRNAHNVLAYVNNATDNCIRAGFSKSNDARLPAGALLSGRSAEQAATDAN 355
            RST+MR+NIKGMLRQRHAADEE   RA        R       GGA  D +G+I  A  D+ D  G NVMPP RNAH V AYVNNA D C+ AGFS++++ RLP  ALLSGRS+ Q A DA+
Sbjct:  546 RSTSMRINIKGMLRQRHAADEE--NRASSVLQSLRRRRPLGACGGA--DIDGDIFGADVDDTDPAGPNVMPPARNAHRVSAYVNNAVDRCLDAGFSRTDNDRLPQAALLSGRSSHQIAADAS 663
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1150.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT57_9PHAE4.420e-2556.56ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1150contigP-littoralis_Contig1150:20586..20991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size407
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.861946-UTR-P-littoralis_Contig1150:20585..206011680789473.861946-UTR-P-littoralis_Contig1150:20585..20601Pylaiella littoralis U1_48UTRP-littoralis_Contig1150 20586..20601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.873209-CDS-P-littoralis_Contig1150:20601..209911680789473.873209-CDS-P-littoralis_Contig1150:20601..20991Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 20602..20991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1150.5.1prot_P-littoralis_Contig1150.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1150 20602..20991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1150.5.1

>prot_P-littoralis_Contig1150.5.1 ID=prot_P-littoralis_Contig1150.5.1|Name=mRNA_P-littoralis_Contig1150.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MRLNIKGMLRQRHAADEEMVRRAEEARANAAAGRGGAFSDDEGEIINAAC
DEDDAEGSNVMPPTRNAHNVLAYVNNATDNCIRAGFSKSNDARLPAGALL
SGRSAEQAATDANSVNIGVSAADAKSSLKT
back to top

mRNA from alignment at P-littoralis_Contig1150:20586..20991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1150.5.1 ID=mRNA_P-littoralis_Contig1150.5.1|Name=mRNA_P-littoralis_Contig1150.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=406bp|location=Sequence derived from alignment at P-littoralis_Contig1150:20586..20991+ (Pylaiella littoralis U1_48)
CGCACGGTCGACGACAATGCGTCTCAACATCAAAGGCATGCTTCGACAGA
GACATGCCGCGGACGAAGAGATGGTCCGACGCGCCGAGGAAGCTAGAGCG
AATGCTGCAGCCGGTCGCGGCGGTGCGTTTTCAGACGACGAAGGGGAGAT
CATAAACGCAGCTTGCGACGAAGATGACGCAGAGGGCTCCAACGTCATGC
CACCGACTCGCAACGCGCACAACGTCCTAGCGTACGTTAACAATGCCACA
GACAACTGCATCAGGGCCGGATTTAGCAAATCCAATGACGCCAGACTACC
GGCGGGAGCACTGCTGAGCGGCCGTTCTGCCGAACAAGCGGCCACAGACG
CCAACAGTGTCAACATCGGAGTCTCTGCTGCGGATGCCAAATCCTCGTTG
AAAACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1150:20586..20991+

>mRNA_P-littoralis_Contig1150.5.1 ID=mRNA_P-littoralis_Contig1150.5.1|Name=mRNA_P-littoralis_Contig1150.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1150:20586..20991+ (Pylaiella littoralis U1_48)
ATGCGTCTCAACATCAAAGGCATGCTTCGACAGAGACATGCCGCGGACGA
AGAGATGGTCCGACGCGCCGAGGAAGCTAGAGCGAATGCTGCAGCCGGTC
GCGGCGGTGCGTTTTCAGACGACGAAGGGGAGATCATAAACGCAGCTTGC
GACGAAGATGACGCAGAGGGCTCCAACGTCATGCCACCGACTCGCAACGC
GCACAACGTCCTAGCGTACGTTAACAATGCCACAGACAACTGCATCAGGG
CCGGATTTAGCAAATCCAATGACGCCAGACTACCGGCGGGAGCACTGCTG
AGCGGCCGTTCTGCCGAACAAGCGGCCACAGACGCCAACAGTGTCAACAT
CGGAGTCTCTGCTGCGGATGCCAAATCCTCGTTGAAAACC
back to top