mRNA_P-littoralis_Contig115.128.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.128.1
Unique NamemRNA_P-littoralis_Contig115.128.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.128.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.960e-101
Identity = 166/218 (76.15%), Postives = 169/218 (77.52%), Query Frame = 2 
Query:    5 MDIDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDIL 634
            MD+DTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH TA VHA VARWWSS ADSNEDRAFTGN TSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig115.128.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 5.630e-56
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:    5 MDIDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MD+DTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig115.128.1 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.490e-15
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSDILE 637
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
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BLAST of mRNA_P-littoralis_Contig115.128.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.830e-7
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:  626 DILEMRFAHTRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNS 763
            DILE RFAH R+G G HK PTA QA +A   GDT R+ HG RRRNS
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNS 621
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE1.960e-10176.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE5.630e-5694.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K994_9PHAE7.490e-1559.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE7.830e-765.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:530638..532022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size764
Hectar predicted targeting categoryother localisation
Exons4
Cds size759
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.5887895-UTR-P-littoralis_Contig115:530637..5306411680789473.5887895-UTR-P-littoralis_Contig115:530637..530641Pylaiella littoralis U1_48UTRP-littoralis_Contig115 530638..530641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.6047103-CDS-P-littoralis_Contig115:530641..5308181680789473.6047103-CDS-P-littoralis_Contig115:530641..530818Pylaiella littoralis U1_48CDSP-littoralis_Contig115 530642..530818 +
1680789473.613346-CDS-P-littoralis_Contig115:531013..5312561680789473.613346-CDS-P-littoralis_Contig115:531013..531256Pylaiella littoralis U1_48CDSP-littoralis_Contig115 531014..531256 +
1680789473.6252742-CDS-P-littoralis_Contig115:531415..5316161680789473.6252742-CDS-P-littoralis_Contig115:531415..531616Pylaiella littoralis U1_48CDSP-littoralis_Contig115 531416..531616 +
1680789473.6344137-CDS-P-littoralis_Contig115:531884..5320221680789473.6344137-CDS-P-littoralis_Contig115:531884..532022Pylaiella littoralis U1_48CDSP-littoralis_Contig115 531885..532022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.128.1prot_P-littoralis_Contig115.128.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 530642..532022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.128.1

>prot_P-littoralis_Contig115.128.1 ID=prot_P-littoralis_Contig115.128.1|Name=mRNA_P-littoralis_Contig115.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MDIDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDA
QQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
KGGTPVSDILEMRFAHTRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERR
RNS
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mRNA from alignment at P-littoralis_Contig115:530638..532022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.128.1 ID=mRNA_P-littoralis_Contig115.128.1|Name=mRNA_P-littoralis_Contig115.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1385bp|location=Sequence derived from alignment at P-littoralis_Contig115:530638..532022+ (Pylaiella littoralis U1_48)
AGGTATGGATATAGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCT
TGGGGACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACCTCACGAAGGTGCGCCAATCGACTTATT
TGTTTTGTGCAGTACTGAGGGCGTACGAGGTTGACGGCACTCTGTTTGGT
TTCATATGCGCCGTTTGAAGTCGATGGTCGTCCTCTTTTATTTTCGCAAC
AGCGGCCCCAAGATAACGGGCATATACGAAGATGATCGTTGGCTACTGTC
TAAATATGCATGTTTATTCTTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGTA
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGCA
CCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAAT
CTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTTGTCGTATA
CGCGCTATTCAATGGACGTGTTTATCCAAGTACCCGTCTCTTGCAACCTT
GCTGCCCCTCCCATGTGCCGGCGTTATTTACACAGTGACTCTCGTGGTAT
GTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACT
ACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCG
AGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCT
ACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCA
AGACTAGCAAGGGTGGAACGCCCGTCTCGGTGAGCCTATCCTGGTGATGT
GCGCGGTTGAATTTTGTCTGTGTTGTAGAGATTGCAGATGAGTGGGCTAG
CTGGCGTGATAGGGCGCGCCCGTGCTGGTCAATAATCTGCAAGTGAACTC
GGGGCTTGTGTGTGCGTATTTGTAAAGTATATATTTTTGTTGGCTGGCGC
GACGCTATCGTCGTGTGGTGCTGGTGTCAATTAACTCCTTTATGTCCGTA
CGTTCGACTCCCTCGACGCGCGTGACTGCCCCTTGCATCTCACCCAGGAC
ATTCTCGAAATGAGGTTCGCGCACACAAGGGCTGGAATGGGGTGTCACAA
GGCTCCTACGGCGTCTCAGGCGGCTCAAGCTGGAATGCACGGAGATACTT
GTCGGCTGTCCCACGGTGAACGGCGTCGCAATTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:530638..532022+

>mRNA_P-littoralis_Contig115.128.1 ID=mRNA_P-littoralis_Contig115.128.1|Name=mRNA_P-littoralis_Contig115.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig115:530638..532022+ (Pylaiella littoralis U1_48)
ATGGATATAGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCTTGGG
GACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACCTCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAGGGTGGAACGCCCGTCTCGGACATTCTCGAAATGAGGTTCGCGCACAC
AAGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTC
AAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGT
CGCAATTCG
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