mRNA_P-littoralis_Contig115.91.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.91.3
Unique NamemRNA_P-littoralis_Contig115.91.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.91.3 vs. uniprot
Match: D7FPM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM8_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.350e-76
Identity = 136/202 (67.33%), Postives = 154/202 (76.24%), Query Frame = 2 
Query:   92 PSSIIVSDTAPLPGGPCRLRRPSPCYTPSTPRHQVGGRIGRTLPYSSFPSCSVTRVVAATXXXXXXXTRAMSSYEWKNMSKQAQKANKEFSDLTKMEIRKAGEDEIDKVQKAVKAMEPFNDVFEVRREGLELFVELGPEVGTYWIKFDLSIHQICLMSPRSGPHRYIYDKESGLWIGEADEHDFRGMLTGDIIQSACGIPDF 697
            PS +  SD  PL G   R R P  C TP  P  +    + R++  +S             XXXXX   RAMSSYEWKNMS QAQKANKEF +L++ EIRKAGE+E+DKV+KA+KAMEPFNDVFEVRREGLE+F ELGPEVGTYWIKFDLSI+QICLMSPRSGPHRYI+DK SG WIGEAD+HDF+GMLT DIIQSACGIPDF
Sbjct:   35 PSLLAPSDDGPLLGPGGRRRPPPFCRTPRAP-DRPWPEVRRSVSSASXXXXXXXXXXXXXXXXXXAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEADKHDFQGMLTRDIIQSACGIPDF 235
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BLAST of mRNA_P-littoralis_Contig115.91.3 vs. uniprot
Match: A0A1X2HKQ5_SYNRA (Ferroxidase n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HKQ5_SYNRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.310e-5
Identity = 29/75 (38.67%), Postives = 39/75 (52.00%), Query Frame = 2 
Query:  452 DVFEVRREGLELFVELGPEVGTYWIKFDLSIHQICLMSPRSGPHRYIYDKESGLWIGEADEHDFRGMLTGDIIQS 676
            D F+V      + ++LG   GTY I       QI L SP+SGP RY YDKES  W    D H   G+L  ++ ++
Sbjct:   31 DGFDVEYSQGVMTLKLGAH-GTYVINKQPPNQQIWLSSPKSGPKRYDYDKESNKWFYHRDNHTLDGLLNEELSEA 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.91.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPM8_ECTSI1.350e-7667.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1X2HKQ5_SYNRA8.310e-538.67Ferroxidase n=1 Tax=Syncephalastrum racemosum TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:321497..323824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPM8
PFAMsFrataxin_Cyay
Model size1615
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.44e-82
EggNOG OGs2C6YH@1|root,2S319@2759|Eukaryota
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789471.2299092-UTR-P-littoralis_Contig115:321496..3224111680789471.2299092-UTR-P-littoralis_Contig115:321496..322411Pylaiella littoralis U1_48UTRP-littoralis_Contig115 321497..322411 -
1680789471.269592-UTR-P-littoralis_Contig115:323808..3238241680789471.269592-UTR-P-littoralis_Contig115:323808..323824Pylaiella littoralis U1_48UTRP-littoralis_Contig115 323809..323824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789471.2404218-CDS-P-littoralis_Contig115:322411..3225021680789471.2404218-CDS-P-littoralis_Contig115:322411..322502Pylaiella littoralis U1_48CDSP-littoralis_Contig115 322412..322502 -
1680789471.2511418-CDS-P-littoralis_Contig115:322920..3230661680789471.2511418-CDS-P-littoralis_Contig115:322920..323066Pylaiella littoralis U1_48CDSP-littoralis_Contig115 322921..323066 -
1680789471.2607944-CDS-P-littoralis_Contig115:323361..3238081680789471.2607944-CDS-P-littoralis_Contig115:323361..323808Pylaiella littoralis U1_48CDSP-littoralis_Contig115 323362..323808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.91.3prot_P-littoralis_Contig115.91.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 322412..323808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.91.3

>prot_P-littoralis_Contig115.91.3 ID=prot_P-littoralis_Contig115.91.3|Name=mRNA_P-littoralis_Contig115.91.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MCPCGSDLWRRRLSSYSSLPTSGTSPSSIIVSDTAPLPGGPCRLRRPSPC
YTPSTPRHQVGGRIGRTLPYSSFPSCSVTRVVAATTTTTTTSTRAMSSYE
WKNMSKQAQKANKEFSDLTKMEIRKAGEDEIDKVQKAVKAMEPFNDVFEV
RREGLELFVELGPEVGTYWIKFDLSIHQICLMSPRSGPHRYIYDKESGLW
IGEADEHDFRGMLTGDIIQSACGIPDF*
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mRNA from alignment at P-littoralis_Contig115:321497..323824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.91.3 ID=mRNA_P-littoralis_Contig115.91.3|Name=mRNA_P-littoralis_Contig115.91.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2328bp|location=Sequence derived from alignment at P-littoralis_Contig115:321497..323824- (Pylaiella littoralis U1_48)
AAGACTTGTGGTGCGCATGTGTCCCTGCGGTTCGGACTTGTGGCGAAGAC
GGCTTTCGTCATACTCATCGCTACCGACATCCGGTACGTCTCCGAGCTCC
ATTATTGTTTCGGATACAGCGCCGCTTCCTGGTGGTCCTTGCCGGCTGCG
GCGGCCGTCACCTTGCTACACTCCGAGTACACCCCGGCATCAGGTTGGTG
GGCGAATCGGGCGCACTCTACCGTACTCTTCCTTCCCCTCTTGCTCCGTG
ACCAGGGTAGTAGCAGCGACGACGACGACGACGACGACGTCGACGAGAGC
AATGTCGTCCTACGAGTGGAAGAATATGAGCAAGCAGGCGCAGAAAGCCA
ACAAAGAGTTCAGCGACCTCACGAAAATGGAGATTCGCAAGGCCGGGGAG
GATGAAATAGACAAGGTGCAGAAGGCTGTGAAGGCCATGGAGCCGTTCAA
CGACGTTTTTGAGGTGCGCGGTGGGACGCAAGTATGCGGCGTACGTGTCT
TGACGGTGAACATGGGTCTCGATGCAGTTTCCTCTGCGTGTGCCACAGCG
AGTATGGTGTTGACCTTGACTTTCCCGTTGTTTGCGTGGAAATGGAGAAG
GGAGTGGCTGTGACCTATTTTGACCGTCGAGTCTTGTTTGTGACTTTGGA
CTCGTCCCCCATTTCCCTGGACCCACGGGGCGATAGCGTCAGATAGTTTA
CGGATGATCTTGAGTTTGATCACCCAAGTATCTTGTCTTTTTTGTTGCCA
ATTACAAGGTGCGGCGGGAGGGGCTGGAGTTGTTTGTGGAGCTCGGCCCC
GAAGTCGGGACGTACTGGATAAAATTCGACCTCAGCATTCACCAGATCTG
TCTCATGTCGCCGAGGTCAGGGCCCCACCGCTACATCTACGACAAAGAAT
CAGGGTGAGTTGGAGCGAGGGAGCAGCTTTTTTTGGTAGAAAATTTGTCC
AGGCTGTTGTTGCATGTCGGGGCCCGACCTTGAGGTGACTTTTGAACCGT
TAGTGAGCTTGTGTTGGCAAACAGAAAACGAAGCTGCGCATCGCTGGGAA
AGATTCGACAAGAATCTGCGGGTGCTGTGATCAATCGGCACTTCCACATC
CGACTCATATGTTGCACTCCCTTGAAGACTGCGGTAAGTTGTGTACGTTG
TATTTTTTTATACATATCAAGGGGTGATGACATGACACGCATGATTTAGG
GTGCCTCTCTTCCCCTTTATATAATGAGTGTAGATACGTGTTTAGGTGCT
CGCCTTTTTACTTCTCCGCCCAAATTTTGTTGCCCCTCATCGTTCCGAAC
TCGCAAACTGGAACCGTGCCAGACTGTGGATCGGGGAGGCTGACGAGCAT
GACTTTCGGGGGATGCTTACGGGGGACATAATACAGTCCGCATGTGGCAT
TCCCGACTTCTGAAAGCCGACACGAGCATGCCACGTGATCATACGCCATG
CTGTCTCCACAACACAGCAATATTTTCATTTACTTTTCGGGGCGAGGGGG
TGGGTGTATGATGATGAGGTATATATGCATTTTGTTGTCTCTTTTTAACT
TACCGAATTTTGCAAATCTTGCTTCCCTCTATCCCTTTGGAAAACGTGCT
ATTAACCTTTCAGACGGTGGATCGGAGAGGCGGACAAGCACGATTTTCAG
GGGATGCTAACACGAGATATAATTCAATCCGCGTGTGGTATTCCTGGCTT
CTAACGCGACATGCTACCCTGTGAAAGAGTGTCGTGATACGTCACTAGAC
GGCAAGGTTTTGGGTGGGCTTGGGGTACCTTGCGAAGGACGACAGTCATA
GCAACGGGCGGTGTGCACAGCGCAGAGAAGTTTTTGTGTGCGTGTCGATC
GTTTTGCCCTCGGCTCGATTGTTTATTTATTTGTTTGACGCGTTGCATGT
GCTAGTACATGTAGAGTACTGCGGGGATCTCTGTTCGCTGGGTGTCACCG
CGTGAGGTTGAGCGTCAGGCGGGTGGTGAATTGCGCACCTTCAGATCATA
ATATGGTTACGCCTGGAGTGTTTGATGGGTGATGTTGCAGGCTTTAGTGC
GGCGACTATTCGTGGAATCAACTTTCGCCTTCGAAAGTTTACGCGAGGTT
GGCTGTGCTCGCTTTTAGTGTGGCAGGAATATACTTCCAAAAGCATACCA
GGCGGTACGAAATAAGATATTATCGGCAACTTTTTTCGTGGAGGATACCA
CCGCTGGTGTGTATCGGAGAAAATATGACACAAGTGATGGCTTTTTCGGG
CTTGGCGTGTGCGTAATGGGGACCAATACACATGGGAGCCGCTATTCAAT
CCGTGGTAATCAAGACTTGGATTAAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:321497..323824-

>mRNA_P-littoralis_Contig115.91.3 ID=mRNA_P-littoralis_Contig115.91.3|Name=mRNA_P-littoralis_Contig115.91.3|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig115:321497..323824- (Pylaiella littoralis U1_48)
ATGTGTCCCTGCGGTTCGGACTTGTGGCGAAGACGGCTTTCGTCATACTC
ATCGCTACCGACATCCGGTACGTCTCCGAGCTCCATTATTGTTTCGGATA
CAGCGCCGCTTCCTGGTGGTCCTTGCCGGCTGCGGCGGCCGTCACCTTGC
TACACTCCGAGTACACCCCGGCATCAGGTTGGTGGGCGAATCGGGCGCAC
TCTACCGTACTCTTCCTTCCCCTCTTGCTCCGTGACCAGGGTAGTAGCAG
CGACGACGACGACGACGACGACGTCGACGAGAGCAATGTCGTCCTACGAG
TGGAAGAATATGAGCAAGCAGGCGCAGAAAGCCAACAAAGAGTTCAGCGA
CCTCACGAAAATGGAGATTCGCAAGGCCGGGGAGGATGAAATAGACAAGG
TGCAGAAGGCTGTGAAGGCCATGGAGCCGTTCAACGACGTTTTTGAGGTG
CGGCGGGAGGGGCTGGAGTTGTTTGTGGAGCTCGGCCCCGAAGTCGGGAC
GTACTGGATAAAATTCGACCTCAGCATTCACCAGATCTGTCTCATGTCGC
CGAGGTCAGGGCCCCACCGCTACATCTACGACAAAGAATCAGGACTGTGG
ATCGGGGAGGCTGACGAGCATGACTTTCGGGGGATGCTTACGGGGGACAT
AATACAGTCCGCATGTGGCATTCCCGACTTCTGA
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