mRNA_P-littoralis_Contig115.89.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: D7FPM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM9_ECTSI) HSP 1 Score: 276 bits (705), Expect = 9.370e-86 Identity = 166/301 (55.15%), Postives = 200/301 (66.45%), Query Frame = 1
Query: 55 MLLPSLGLVSF-WALSFGHAFVFPLPPLQQQHHVINPNNALEHTSIIRHTTTASDTSRESLSSSLPVKAVAGEEGASTAGGRSIAKQRFLDNLKRKRAGGSVPSSVLDADLALLRTPRGGGGRAHGAAPSTTATAADSWRGKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNGEDRPTGGPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
M+L SL LV+ +L+ G AF+ LP +QQ V+ P+ + T+IIRH DT S+ S+ A G +TA K+ FL NL+RKRAG V SS L+ADL +L G + +TT SW+G WEICYAPHI+TL KVILT+F V Y F +DDGRMVSH+ +ESKVFGSGWFNADGRVV +P + G T +EA + VQVIFERFWWDR+GEDRPTG PPG++A VD FVQAAGKAMFFDGLSVFPV YLDDD CVFEF+AAGTVV SQR+
Sbjct: 1 MVLRSLFLVALPISLNLGSAFL--LPSVQQ---VVLPDTS---TAIIRH---QHDTGSRSMLSAAAPTAAGGSSSTATA------KKSFLRNLERKRAGEEVASSALNADLHVL-------GSTPTQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLP-----ASEGGT------NEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 266
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A835Z4A1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A1_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.800e-25 Identity = 82/227 (36.12%), Postives = 111/227 (48.90%), Query Frame = 1
Query: 280 STAGGRSIAKQRFLDNLKRKRAGGSVPSSVLDADLALLR---TPRGGGGRAHGAAPSTTATAADSWRGKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNGEDRPTGGPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQR 951
S AG R +AKQ F D L R+G V S + DA L TP AP AA +G+W +C+APHI G ++ TKF P EY F+ G S+ F S +FGSGW NADG V D+ + V++ F+R+W DR D A +D +QAAG+ +F LS FP++YLD+DLCVF+F T + ++R
Sbjct: 60 SDAGARRLAKQAFEDAL---RSG--VNSDIDDAIRVLCELNPTP----------APGLATQAA---KGRWVVCHAPHIAAGGILLQTKFVP-EYWFDGQ-GNTSSYVKFTSSIFGSGWLNADGIVY------------------SADDGQAVVIE--FKRYWMDRGTADPSLTPDVKRGASQMDSVIQAAGEGLFIKPLSYFPIKYLDEDLCVFDFPPLNTRIAARR 246
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A7S3ANS9_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANS9_9EUKA) HSP 1 Score: 109 bits (272), Expect = 5.490e-24 Identity = 71/213 (33.33%), Postives = 102/213 (47.89%), Query Frame = 1
Query: 319 LDNLKRKRAGGSVPSSVLDADLALLRTPRGGGGRAHGAAPSTTATAADSWRGKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNGEDRPTGGPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRVG 957
+D L R R G S P + L P + P+ A ++ G+W + +APHI+TL +++LT F +EY +A G MVS+ + S+V G GW T+GV + V +I++R WW GE PP A+ + VQA G+A F +GLSVFPVRYL DDLC+F F+A + + G
Sbjct: 7 VDELVRARVGRSDPRLGVAVTDLLAAHPN--------SVPAPVDLANNA--GRWRVVHAPHIDTLSRLLLTTF-DIEYCMDARGG-MVSNVRYSSRVAGDGWL--------------------CTSGVVASDLAAPKVSIIWDRIWWLPGGE---ADAPPRASEGILRPIVQALGRAGFIEGLSVFPVRYLQDDLCIFNFQAFTVTTIREEFG 184
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A6V1TFF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFF4_HETAK) HSP 1 Score: 106 bits (264), Expect = 4.940e-23 Identity = 60/182 (32.97%), Postives = 92/182 (50.55%), Query Frame = 1
Query: 439 STTATAADSWRGKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDV-VQVIFERFWWD-RNGEDRPTG--------GPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
+T D+++G W +C+APHI TL K+ LT+F P+EY + + S+ + + + G+GW NA G + + R D+ V++ F+ FWWD + E R PP AT D VQ GKA F + S+FP++YLD+ LC+FEF G +V+ +V
Sbjct: 19 ATRGLEDDTYKGVWSVCFAPHIYTLSKIFLTEFKPIEYHLLPGNS-IESYVRYSNPLIGAGWLNAAGSI----------------------DVRDDMSVKITFDNFWWDIQTSEPRSLETFLQDFRTSPPSAT----DVLVQNIGKAGFLESFSIFPLQYLDETLCIFEFPPLGVKIVASKV 173
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A0G4HTV7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HTV7_9ALVE) HSP 1 Score: 108 bits (269), Expect = 2.010e-22 Identity = 62/175 (35.43%), Postives = 91/175 (52.00%), Query Frame = 1
Query: 439 STTATAADSWRGKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNGEDRPTGGPPG---ATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
S + A + W G W++ +APHI L K++L K PVEY + ++ S+ ++S G GW A G +V P A ++ V V+F+ F W+ +DRPT PG VD VQ G+ FF+ LS+FPVR+LDD LC+F+FEA +V++R
Sbjct: 133 SMSEGARNKWDGVWQVAHAPHIRKLSKLLLCKLGPVEYSISQKGSQISSYCLYQSPFIGRGWLAAAGGLVREKPGG----------------AGEETVTVVFDSFRWEPL-KDRPTILRPGDGKKMKSLVDVVVQKLGELTFFENLSLFPVRFLDDRLCLFDFEAVSLPIVAKRA 290
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A7S2NPB5_9EUKA (Hypothetical protein n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2NPB5_9EUKA) HSP 1 Score: 100 bits (248), Expect = 7.030e-20 Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 1
Query: 460 DSWRGKWEICYAPHIETLGKVILTKFAPVEYVFN--ADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNGEDRPTGGPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
+S+ G+W++ YAPHI + ++ T+F P+EYV + R+ S+ ++ GW NA G + PV +S V+++F FW T P A AAG+ +FF+GLSVFPVRY D DL VFEF GT++V RV
Sbjct: 124 ESFVGRWKVIYAPHIRNMEGILFTRFDPIEYVLQPAGEAMRIESNVRYQLGP-AQGWLNASGTIQPVDTSS---------------------VRILFSHFWTSSARPSPTTRDAPDVVATLPAQLTNAAGRLLFFEGLSVFPVRYSDSDLAVFEFPPLGTLLVISRV 268
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A250X3A6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3A6_9CHLO) HSP 1 Score: 81.6 bits (200), Expect = 7.750e-14 Identity = 50/165 (30.30%), Postives = 78/165 (47.27%), Query Frame = 1
Query: 469 RGKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNG---EDRPTGGPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
+G W++ +APHI + V+ KF P+ Y D ++ S+ + + G GW NA G + G + D D V + F+RFW D E+ P G D DW + G+ FF L++FP+ YLD++LCVFEF + + Q++
Sbjct: 84 QGTWKVFHAPHISRISSVLGAKFDPILYKLEGD--KLSSYVKYSHPLVGMGWLNAAGSM-----------------GRKYD----DTVDIHFDRFWLDGPETLREEIPRDAYSGLK-DMDDW-MSKLGRGFFFPQLALFPIHYLDEELCVFEFPPLNSKIAVQKI 223
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A7S1YML6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YML6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.900e-9 Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 1
Query: 472 GKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDR-NGEDRPTGGPPGATADAVD-----WFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
G W++ YAPH+ T+ + + V+Y +D M SHA ++ +F G + S+SG T V E R D Q F+ F+ D +G+ P A+ + V + G MF + +SVFPV Y+DDDLCVF+FE GT +V++++
Sbjct: 136 GLWKVIYAPHMTTMANIGGGEL-DVQYDLK-NDFTMTSHARYDFP-----FFKQKGYL---------SVSG-TYGSVNELVCRVDFDQAWFKPFYIDEEDGKMTEEEDVPYASIEQVPDSIGKSIITNVGNLMFLESVSVFPVSYMDDDLCVFDFELLGTRIVARKI 285
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Match: A0A6U0ESK7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0ESK7_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.630e-9 Identity = 52/169 (30.77%), Postives = 77/169 (45.56%), Query Frame = 1
Query: 472 GKWEICYAPHIETLGKVILTKFAPVEYVFNADDGRMVSHAGFESKVFGSGWFNADGRVVPVPPTSPPSISGSTTTGVEEDEARQDVVQVIFERFWWDRNGEDR--------PTGGPPGATADAVDWFVQAAGKAMFFDGLSVFPVRYLDDDLCVFEFEAAGTVVVSQRV 954
G W++ YAPH+ T+ K+ +F VEY+ DD M SHA ++ +F + +S S T G D V +V F++ W + D P A + GK F + +SVFP+ YLDDDLCVF+FE GT + +++V
Sbjct: 142 GTWKVVYAPHMTTMAKLGGGEFQ-VEYILR-DDLTMDSHARYDFPLFKQRGY----------------LSVSGTYGSVNDL----VCRVDFDQSWVKQLPVDEDIIVEKDVPYQSITEVPDSASKQVITTIGKLFFLEQVSVFPISYLDDDLCVFDFELLGTRICARKV 288 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig115.89.1 >prot_P-littoralis_Contig115.89.1 ID=prot_P-littoralis_Contig115.89.1|Name=mRNA_P-littoralis_Contig115.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp MLLPSLGLVSFWALSFGHAFVFPLPPLQQQHHVINPNNALEHTSIIRHTTback to top mRNA from alignment at P-littoralis_Contig115:316423..319556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig115.89.1 ID=mRNA_P-littoralis_Contig115.89.1|Name=mRNA_P-littoralis_Contig115.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3134bp|location=Sequence derived from alignment at P-littoralis_Contig115:316423..319556+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig115:316423..319556+ >mRNA_P-littoralis_Contig115.89.1 ID=mRNA_P-littoralis_Contig115.89.1|Name=mRNA_P-littoralis_Contig115.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig115:316423..319556+ (Pylaiella littoralis U1_48)back to top |