mRNA_P-littoralis_Contig115.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.63.1
Unique NamemRNA_P-littoralis_Contig115.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.63.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 2.830e-64
Identity = 106/176 (60.23%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:   19 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARV 546
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W  RLQ WI+ P VLE GFK    + ALHYL CIIN V +ELYNF VEERK A AIK+ YPS +YLI++ R +V
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADWPGRLQAWIDHPDVLERGFKMYPTKKALHYLSCIINQVAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQV 267
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BLAST of mRNA_P-littoralis_Contig115.63.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.290e-50
Identity = 96/180 (53.33%), Postives = 112/180 (62.22%), Query Frame = 1 
Query:   10 RGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIK-LEYPSQKYLIAKPRARV 546
            RG  +   +   V  +  N+ + I  GLRGDTD  +  V ERGD LFN R  WLGPLW +VKGL PT  LI   W G+VDG+AAL+HRKADT  A AFTL RFAGW  RL  WIN P VLE GFK   EE ALHYL CIINHVEE      V ER      +    PS++Y I++PR +V
Sbjct:    6 RGFGDISDDDPSVQNVRVNVRSQIARGLRGDTDDVIKKVRERGDDLFNRRKSWLGPLWEKVKGLAPTARLISEAWNGHVDGVAALKHRKADTMAAAAFTLARFAGWEGRLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSERYQISRPRGQV 185
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BLAST of mRNA_P-littoralis_Contig115.63.1 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.460e-50
Identity = 88/147 (59.86%), Postives = 101/147 (68.71%), Query Frame = 1 
Query:    7 MRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEE 444
            ++GA +D P    +  L   + + I  GLRGD D     V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW  RL+ WI+ P VLEAG +  +EE ALHYL CIINHVEE
Sbjct:   10 IQGAKDDDPF---LQNLRVYVRSQIASGLRGDLDGVKKKVWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGWEGRLRAWISQPEVLEAGLQDYQEERALHYLSCIINHVEE 153
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BLAST of mRNA_P-littoralis_Contig115.63.1 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.530e-40
Identity = 77/134 (57.46%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:   46 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEE 444
            V  L   + + I  GLRG  D     V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW  RL+ WI+ P VLEAG +  +EE  LHYL CIINHVEE
Sbjct:  175 VQNLWVYVRSQIASGLRGGLDGVKRKVWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGWEGRLRAWISQPEVLEAGLRDYQEEKELHYLSCIINHVEE 308
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE2.830e-6460.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE1.290e-5053.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA5_9PHAE1.460e-5059.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE4.530e-4057.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:161013..162106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons3
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.9911668-CDS-P-littoralis_Contig115:161012..1611141680789469.9911668-CDS-P-littoralis_Contig115:161012..161114Pylaiella littoralis U1_48CDSP-littoralis_Contig115 161013..161114 -
1680789470.002268-CDS-P-littoralis_Contig115:161452..1618631680789470.002268-CDS-P-littoralis_Contig115:161452..161863Pylaiella littoralis U1_48CDSP-littoralis_Contig115 161453..161863 -
1680789470.0142345-CDS-P-littoralis_Contig115:162073..1621001680789470.0142345-CDS-P-littoralis_Contig115:162073..162100Pylaiella littoralis U1_48CDSP-littoralis_Contig115 162074..162100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789470.0259607-UTR-P-littoralis_Contig115:162100..1621061680789470.0259607-UTR-P-littoralis_Contig115:162100..162106Pylaiella littoralis U1_48UTRP-littoralis_Contig115 162101..162106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.63.1prot_P-littoralis_Contig115.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 161013..162100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.63.1

>prot_P-littoralis_Contig115.63.1 ID=prot_P-littoralis_Contig115.63.1|Name=mRNA_P-littoralis_Contig115.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNG
RLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFT
LTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYN
FFVEERKNAIAIKLEYPSQKYLIAKPRARV
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mRNA from alignment at P-littoralis_Contig115:161013..162106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.63.1 ID=mRNA_P-littoralis_Contig115.63.1|Name=mRNA_P-littoralis_Contig115.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1094bp|location=Sequence derived from alignment at P-littoralis_Contig115:161013..162106- (Pylaiella littoralis U1_48)
CAATACATGCGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCA
TATTGTTGCCTGCTCGCCCATTTCAGACATCATGCAGCCAATGTTTCCTT
TTGGTGTGACCTCGCATAGTTAGACTGGCACTTGTTGTTTCACTTGTGTT
TCATAACCATCGCAACGAGAGCCTGTTTGGGATATATTTTCAATCGCTTT
TATCTTTTGTTTGTCCGCGGCCGTGTGGTTGGCGATGAAGCAGAATGCTG
GCAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGT
CTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGA
CGCCCTCTTCAACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGG
TCAAAGGTCTTCCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGGGC
TATGTGGACGGACTCGCCGCCCTGGAACACCGTAAGGCTGATACTAAGAC
GGCGACAGCGTTCACCTTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCC
AAACCTGGATAAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCG
CGGGAGGAGATTGCATTGCACTACCTATGCTGCATCATCAATCACGTGGA
GGAGGTGGGTTGATGCGGTGGTCAATAGGAAGCGAGGAAGACATACCAGA
CGAAATTTGCCCAAGGATTACAATCTCCTTTCCGCAGCCGTAGTCGACTA
AGACATAAACTCCATCCTCCCTCGGTACGTTACAGCGCTGTGTATTTTGT
ATCGTCGGGGTACGCTATCTTTCTGATTCCTCATGTGTTGGAGCAATCAT
CGCTCCGAGCGCTTAGTTTTGGAGACAACCATTCTGATTTTCTCTTCTAT
AGCTTGGACTCGACGGCCACGTAGCTGAGGCACCCTCCCCGTGCCCGCGC
TCCTCTCCTCGAACCGCTCCCCGTCCCCCCCTGTTGCTGCAGGAGTTGTA
CAACTTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAAGCTCGAGT
ACCCGAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:161013..162106-

>mRNA_P-littoralis_Contig115.63.1 ID=mRNA_P-littoralis_Contig115.63.1|Name=mRNA_P-littoralis_Contig115.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig115:161013..162106- (Pylaiella littoralis U1_48)
ATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCT
GGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAG
ATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGG
CGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACTCG
CCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCACC
TTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCCAAACCTGGATAAACGA
CCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGCAT
TGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGAGTTGTACAAC
TTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAAGCTCGAGTACCC
GAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAGTC
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