mRNA_P-littoralis_Contig115.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.45.1
Unique NamemRNA_P-littoralis_Contig115.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.45.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.580e-32
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:  184 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 492
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADW 194
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BLAST of mRNA_P-littoralis_Contig115.45.1 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.520e-30
Identity = 64/114 (56.14%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:  154 EAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 492
            E   + ++GA +D P    +  L   + + I  GLRGD D     V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW
Sbjct:    4 EHIARCIQGAKDDDPF---LQNLRVYVRSQIASGLRGDLDGVKKKVWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGW 114
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BLAST of mRNA_P-littoralis_Contig115.45.1 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.740e-21
Identity = 53/95 (55.79%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  211 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 492
            V  L   + + I  GLRG  D     V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW
Sbjct:  175 VQNLWVYVRSQIASGLRGGLDGVKRKVWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGW 269
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BLAST of mRNA_P-littoralis_Contig115.45.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.530e-9
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = 3 
Query:  486 WLGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIK-LEYPSQKYLIAKPRARV 710
            W G RL  WIN P VLE GFK   EE ALHYL CIINHVEE      V ER      +    PS++Y I++PR +V
Sbjct:  111 WEG-RLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSERYQISRPRGQV 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE5.580e-3260.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA5_9PHAE2.520e-3056.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE2.740e-2155.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE4.530e-951.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:129427..130891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size710
Hectar predicted targeting categoryother localisation
Exons4
Cds size402
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.45.1prot_P-littoralis_Contig115.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 129958..130570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.6939495-UTR-P-littoralis_Contig115:129426..1295281680789469.6939495-UTR-P-littoralis_Contig115:129426..129528Pylaiella littoralis U1_48UTRP-littoralis_Contig115 129427..129528 -
1680789469.7124243-UTR-P-littoralis_Contig115:129865..1299571680789469.7124243-UTR-P-littoralis_Contig115:129865..129957Pylaiella littoralis U1_48UTRP-littoralis_Contig115 129866..129957 -
1680789469.749961-UTR-P-littoralis_Contig115:130570..1306051680789469.749961-UTR-P-littoralis_Contig115:130570..130605Pylaiella littoralis U1_48UTRP-littoralis_Contig115 130571..130605 -
1680789469.7636828-UTR-P-littoralis_Contig115:130812..1308911680789469.7636828-UTR-P-littoralis_Contig115:130812..130891Pylaiella littoralis U1_48UTRP-littoralis_Contig115 130813..130891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.7257833-CDS-P-littoralis_Contig115:129957..1302751680789469.7257833-CDS-P-littoralis_Contig115:129957..130275Pylaiella littoralis U1_48CDSP-littoralis_Contig115 129958..130275 -
1680789469.7361565-CDS-P-littoralis_Contig115:130486..1305701680789469.7361565-CDS-P-littoralis_Contig115:130486..130570Pylaiella littoralis U1_48CDSP-littoralis_Contig115 130487..130570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.45.1

>prot_P-littoralis_Contig115.45.1 ID=prot_P-littoralis_Contig115.45.1|Name=mRNA_P-littoralis_Contig115.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MSVQDSDDEEETDEAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRG
DTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVD
GLAALEHRKADTKTATAFTLTRFAGWGRDSKPG*
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mRNA from alignment at P-littoralis_Contig115:129427..130891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.45.1 ID=mRNA_P-littoralis_Contig115.45.1|Name=mRNA_P-littoralis_Contig115.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1465bp|location=Sequence derived from alignment at P-littoralis_Contig115:129427..130891- (Pylaiella littoralis U1_48)
GCGGCGGACGAGGAGGAGGAGGAGGAGGAGGACAGCGATGACGCAGAAAA
CCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTATGTTGAAGCCTGGGAGGT
TAGAGTCGAATGAGTACGGGTGACAAAAAAACGGCGTGTTCTTTTTTCCT
TCTTTCGTTATCTAGGAACCATCGCTTTTCTCTCTTTGCTTTCTCCCACG
TCCCCCCGCAAACCTGAACTCGCCTGACGAGTGTCTTTGAGTCTCACGCT
CTCCTCGTTGCGCTTGCGAATTCTGATTGGAGCAAGGTCGAGGAGAGGAG
TCTGAAGAAGATGACGATTGCATGAGCGTGCAGGATTCGGACGATGAGGA
AGAGACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATG
TTCCGGTGAGAATGGCAGTGCATATTGTTGCCTGCTCGCACATTTCAGAC
ATCATGCAGCCAATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGG
CACTTGTTGTTTCACTTGTGTTTCATCACCATCGCAACGAGAGCCTGTTT
GGGATGATATTTTCAATCGCTTTTATCTTTTGTTTGTCCGCGGCCGTGTG
GTTGACGATGAAGCAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACA
TTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTG
TCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTG
GCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACT
TGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACTCGCCGCCCTGGAA
CACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCACCTTGACCCGTTT
TGCTGGCTGGGGGAGAGACTCCAAACCTGGATAAACGACCCCAGTGTGTT
GGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGCATTGCACTACCTAT
GCTGCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGGTCAATAG
GAAGTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACAATCTCC
TTTCCGCAGCCGTAGTTGACTAAGACATAAACTCCATCCTCCCTCGGTAC
GTTACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTCTGATT
CCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGAGACAA
CCATTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTAGCTGA
GGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGAACCGCTCCCCGTCCCC
CCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCGGAAAAATG
CCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGATTGCAAAA
CCGCGCGCGAGAGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:129427..130891-

>mRNA_P-littoralis_Contig115.45.1 ID=mRNA_P-littoralis_Contig115.45.1|Name=mRNA_P-littoralis_Contig115.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig115:129427..130891- (Pylaiella littoralis U1_48)
ATGAGCGTGCAGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGT
CCAATACATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCA
ACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGG
GACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTT
CAACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTC
TTCCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGAC
GGACTCGCCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGC
GTTCACCTTGACCCGTTTTGCTGGCTGGGGGAGAGACTCCAAACCTGGAT
AA
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