mRNA_P-littoralis_Contig115.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.44.1
Unique NamemRNA_P-littoralis_Contig115.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 1.200e-75
Identity = 110/167 (65.87%), Postives = 128/167 (76.65%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPDIDPTVFW 501
            ELYNF VEERK A AIK+ YPS +YLI++ R +VLYY+ GW+ASR WTHQRR NLSPDW R+V HNTYQSS+ A A +P++  F EVVDRKNDLK+GP LL  TM W E  +ALE   FHFLKDP+YLG +L   PAEI KVV E EYVK+ WRKCCPP +D  VFW
Sbjct:  234 ELYNFLVEERKRANAIKVLYPSTQYLISQSRGQVLYYVCGWMASRAWTHQRRRNLSPDWYRIVEHNTYQSSEMAKARDPMIGQFAEVVDRKNDLKHGPRLLYPTMQWVEFVFALETGDFHFLKDPMYLGAFLWDFPAEIFKVVGEEEYVKDMWRKCCPPGVDHAVFW 400          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5JX42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX42_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.690e-63
Identity = 100/168 (59.52%), Postives = 124/168 (73.81%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPD---IDPTV 495
            ELY  +V+ERK+++A++L YPS++Y I++PR +VL+ IAGW  S+  THQ RHNLS DWVRVV+HNT +SS+EA+    +LRDFV  VD KNDLKNGPG L  TMDW E  YA+E   FHFLK  I+L   LGGLPA+I KVV EAE VK+ W  CCPP    IDP+V
Sbjct:   13 ELYKVYVKERKDSVAVELSYPSERYQISRPRGQVLHDIAGWATSKALTHQARHNLSQDWVRVVQHNTRRSSREAMFTNVMLRDFVAGVDHKNDLKNGPGRLYPTMDWVEFVYAVERGIFHFLKKLIFLAAGLGGLPAQIFKVVREAEVVKDMWGNCCPPGPPAIDPSV 180          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.660e-59
Identity = 99/148 (66.89%), Postives = 114/148 (77.03%), Query Frame = 1
Query:   61 PSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPD---IDPTV 495
            PS++Y I++PR +VLYYIAGW AS+  THQ RHNLS DWVRVV+HNT +SS+EAI    +LRDFV  VD+KNDLKNGPGLL  TMDW E  YA+E   FHFLK+PI+L   LGGLPAEI KVVSEAE VKE W  CCPP    IDP+V
Sbjct:  172 PSERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFVAGVDQKNDLKNGPGLLYPTMDWVEFVYAVERGIFHFLKNPIFLAACLGGLPAEIFKVVSEAEVVKEMWGNCCPPGPPAIDPSV 319          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 5.080e-51
Identity = 91/168 (54.17%), Postives = 109/168 (64.88%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCP---PDIDPTV 495
            ELY  +V+ERK+++A++L YPS++Y I KPR                     HNLS DWVRVV+HNT +SS EAI  + +LRD V  VD KND+KNGPGLL  TM+W E  YA+E   FHFLK PI+L   LG LPAEI  VV EAE VKE W KCCP   P IDP+V
Sbjct:    3 ELYQVYVKERKDSVAVELSYPSERYQITKPRG--------------------HNLSQDWVRVVQHNTRRSSGEAICTDSMLRDSVAKVDSKNDMKNGPGLLYPTMEWVEFVYAVERGIFHFLKKPIFLAACLGDLPAEIFNVVREAEVVKEMWGKCCPSGPPAIDPSV 150          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.810e-49
Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPD---IDPTV 495
            ELY  +V++RK+++A++L YPS +Y I +PR +VLYY+AGW AS+ WTHQR HNLS      V  NT  +++               VD KND+KNG GLL  T++W E  YA+E   FHFLK PI+L   LG LPAEI+KVVSEAE VKE W  CCPP    IDP+V
Sbjct:    3 ELYKVYVKKRKDSVAVELSYPSVRYQITQPRGQVLYYVAGWAASKAWTHQRSHNLS------VSSNTTLAAK---------------VDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVKEMWGNCCPPGPPAIDPSV 149          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 8.810e-48
Identity = 79/167 (47.31%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNL-SPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPDIDPTVF 498
            ELY  FV+ER+ +  + L YP++ + I+  R +VLYYIAGWL S+ W+ +RRHN+   +W  +V+HN   SS  AI  +P+L+D V  VD +ND  NG GLL  T+ W+E  + +E   +HFL+DP +LGTYLG L AEIL+VV+E+  V+  W KCCP  + P  F
Sbjct:  109 ELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPPPF 275          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.180e-44
Identity = 81/167 (48.50%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSP-DWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPDIDPTVF 498
            ELY  FV ++K A  IKL YP +K  + KPRA+VLYYI+GWL S+VWTH RR  +   +WV  V  N   S+  A+  +  L   V  V R++D  NG GLL +T  +FE TYALE  YFH L  P  LG YLG LP E L+VV EA  V++ W +CCPP      F
Sbjct:  170 ELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVNF 336          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.440e-42
Identity = 78/167 (46.71%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSP-DWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGLLCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVKEKWRKCCPPDIDPTVF 498
            ELY  FV ++K A  IKL YP  K  + KPRA+VLYYI+GWL S+ W H RR  +   +WV  V  N   S   A+  +  L   V  V R+ND  NG GLL +T  +FE TYA E  YFH L  P  LG YL GLP ++L+VVSEA  +++ W +CCPP      F
Sbjct:  112 ELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVNF 278          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5KGF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.810e-27
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   16 FVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRK 273
            + +ERK+++A++L YPS+++ I KP  +VLYYIAGW AS+ WTH RRHNLS DWVRVV+HNT +S  EAI  + +LRDF     R+
Sbjct:   50 YAKERKDSVAVELSYPSERHQITKPCGQVLYYIAGWAASKAWTHHRRHNLSQDWVRVVQHNTRRSRGEAICTDSMLRDFAAKAIRR 135          
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Match: A0A6H5JQL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.460e-26
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 ELYNFF-VEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLR 246
            ELYN   V+ERK+++A++L YPS++Y I K R +VLYYIAGW AS+ WTH+RRHNLS DWVRVV+HNT +SS EAI  + +LR
Sbjct:  133 ELYNKVNVKERKDSVAVELSYPSERYQITKSRGQVLYYIAGWAASKAWTHKRRHNLSQDWVRVVQHNTRRSSGEAICTDSMLR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.200e-7565.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX42_9PHAE1.690e-6359.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE1.660e-5966.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE5.080e-5154.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY9_9PHAE1.810e-4951.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE8.810e-4847.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI9.180e-4448.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R0_ECTSI1.440e-4246.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGF3_9PHAE5.810e-2755.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQL1_9PHAE1.460e-2662.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:129026..129528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size505
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.657528-CDS-P-littoralis_Contig115:129027..1295281680789469.657528-CDS-P-littoralis_Contig115:129027..129528Pylaiella littoralis U1_48CDSP-littoralis_Contig115 129028..129528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.44.1prot_P-littoralis_Contig115.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 129028..129528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.44.1

>prot_P-littoralis_Contig115.44.1 ID=prot_P-littoralis_Contig115.44.1|Name=mRNA_P-littoralis_Contig115.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
ELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARVLYYIAGWLASRVWTHQ
RRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVVDRKNDLKNGPGL
LCSTMDWFELTYALEGAYFHFLKDPIYLGTYLGGLPAEILKVVSEAEYVK
EKWRKCCPPDIDPTVFW
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mRNA from alignment at P-littoralis_Contig115:129026..129528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.44.1 ID=mRNA_P-littoralis_Contig115.44.1|Name=mRNA_P-littoralis_Contig115.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=503bp|location=Sequence derived from alignment at P-littoralis_Contig115:129026..129528- (Pylaiella littoralis U1_48)
GAGTTGTACAACTTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAA GCTCGAGTACCCGAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAG TCCTGTACTACATTGCCGGGTGGTTGGCGAGCAGGGTTTGGACCCATCAG AGAAGACACAACCTTTCCCCAGATTGGGTGCGTGTCGTCCGCCACAACAC TTACCAGTCCAGTCAGGAGGCGATAGCTCATGAACCTGTGCTTAGAGATT TCGTAGAGGTAGTGGACCGGAAGAACGATCTGAAGAACGGTCCGGGACTT CTTTGCTCGACCATGGATTGGTTTGAGCTCACGTATGCTCTGGAGGGAGC CTACTTCCATTTTTTGAAAGACCCGATCTACCTTGGTACTTACCTTGGGG GCTTGCCAGCAGAGATTTTGAAAGTCGTGAGCGAGGCGGAGTACGTAAAG GAGAAGTGGCGAAAATGCTGTCCTCCCGACATCGACCCAACTGTATTCTG GGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:129026..129528-

>mRNA_P-littoralis_Contig115.44.1 ID=mRNA_P-littoralis_Contig115.44.1|Name=mRNA_P-littoralis_Contig115.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig115:129026..129528- (Pylaiella littoralis U1_48)
GAGTTGTACAACTTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAA
GCTCGAGTACCCGAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAG
TCCTGTACTACATTGCCGGGTGGTTGGCGAGCAGGGTTTGGACCCATCAG
AGAAGACACAACCTTTCCCCAGATTGGGTGCGTGTCGTCCGCCACAACAC
TTACCAGTCCAGTCAGGAGGCGATAGCTCATGAACCTGTGCTTAGAGATT
TCGTAGAGGTAGTGGACCGGAAGAACGATCTGAAGAACGGTCCGGGACTT
CTTTGCTCGACCATGGATTGGTTTGAGCTCACGTATGCTCTGGAGGGAGC
CTACTTCCATTTTTTGAAAGACCCGATCTACCTTGGTACTTACCTTGGGG
GCTTGCCAGCAGAGATTTTGAAAGTCGTGAGCGAGGCGGAGTACGTAAAG
GAGAAGTGGCGAAAATGCTGTCCTCCCGACATCGACCCAACTGTATTCTG
G
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