prot_P-littoralis_Contig115.39.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig115.39.1
Unique Nameprot_P-littoralis_Contig115.39.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length428
Homology
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BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Match: A0A6H5JC47_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC47_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 4.140e-118
Identity = 182/216 (84.26%), Postives = 195/216 (90.28%), Query Frame = 0 
Query:  211 ERLRDQLKKADPPSRDHLRRKSTQQQQPVQRAAITVHDVMETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDRKGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHSLTPNAKLQIGGGGERMKPWWYERAGGVEYGWWYECSIVARADIAVGAEVTIEYANPPEEAVRPQPPKRASKRSRRR 426
            ++LRDQLKKA PP+RDHLRR STQQQ PVQR A+TVHDVME  LFSHDALKE+ S IH KGLGTKVAF EGDT+LTV+LPDV+VPAGY++KGGGYTCMG+IMH DGLGALVIDPSKTMRGTIPACRAFMEI LLRLLNHS  PNAKL I GGG RMKPWWYERAGGVEYGWWYECSIVA ADI VGAEVTIEYA+PP+ A RPQPPKRASKRSRRR
Sbjct:  294 DKLRDQLKKASPPARDHLRR-STQQQPPVQRPALTVHDVMEKDLFSHDALKEINSLIHCKGLGTKVAFAEGDTLLTVVLPDVDVPAGYEKKGGGYTCMGYIMHADGLGALVIDPSKTMRGTIPACRAFMEISLLRLLNHSFAPNAKLVIHGGGGRMKPWWYERAGGVEYGWWYECSIVACADIEVGAEVTIEYADPPKGAKRPQPPKRASKRSRRR 508
[Close]
BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.180e-28
Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 0 
Query:  244 ITVHDVMETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDRKGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHSLTPNAKLQIGGGGERMKPWWYERAGGVEYGWWYECSIVARADIAVGAEVTIEYANPPEE 409
            IT  D      ++H+ +    S I G GL +K A   G  +   LLPD  V + +      Y+C  HIMH DG  AL IDP + MRG + AC A  +I LLRLLNHS +PN +L +G   +   P W+E  GG EYG WY CSI A  +I  G E+TI+YA  P E
Sbjct:  749 ITAADARGYYAWAHEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAF--ANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVG---DAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAE 909
[Close]
BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.110e-17
Identity = 69/186 (37.10%), Postives = 92/186 (49.46%), Query Frame = 0 
Query:  229 RRKSTQQQQPVQRAAI---TVHD-VMETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDRKGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHSLTPNAKLQIGGGGERMKPWWYE--RAG-GVEYGWWYECSIVARADIAVGAEVTIEYANPP 407
            R K+ +  QP + AA+   ++HD V    L  H  ++E  S I G G   K    +G T+ T +LP  E    +  +   Y C  H+MH D  G + IDP    RG +  C   M   ++RLLNHS +PNA+L  GG      P WYE  RAG       WY CS+V R  +  G E+TI YA  P
Sbjct:   92 REKAQEPDQPKEMAALHFRSMHDEVPFVWLKEHFEVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQ--YDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGA---APPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFP 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JC47_9PHAE4.140e-11884.26SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFA9_9PHAE1.180e-2843.37SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JBG8_9PHAE1.110e-1737.10SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 117..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 407..427
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..238
IPR046341SET domain superfamilyGENE3D2.170.270.10SET domaincoord: 151..414
e-value: 6.9E-9
score: 37.7
IPR046341SET domain superfamilySUPERFAMILY82199SET domaincoord: 257..405
IPR001214SET domainPFAMPF00856SETcoord: 155..403
e-value: 2.8E-5
score: 24.6
IPR001214SET domainPROSITEPS50280SETcoord: 258..404
score: 8.534115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:106629..109147 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.39.1mRNA_P-littoralis_Contig115.39.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig115 106612..109371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig115.39.1 ID=prot_P-littoralis_Contig115.39.1|Name=mRNA_P-littoralis_Contig115.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=428bp
MVWKDVLRVDGVLAWYLGLEESMIVERNELYLRDLLWKRVGLDADLIDFP
AAVRWPSPLWSSCLSALQLESPEGSYSSSRGAQSWQLQQGFLEQQVKEAH
RRDCAACRQRTKERKQARQQEKERVTQTKEREQARQQEKERVTQDEERVV
RAEKERKEDSEKLERERERAAAEKLEAERRVQQAEIKAAARAKAETQKLE
RRLARVQADRERLRDQLKKADPPSRDHLRRKSTQQQQPVQRAAITVHDVM
ETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDR
KGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHS
LTPNAKLQIGGGGERMKPWWYERAGGVEYGWWYECSIVARADIAVGAEVT
IEYANPPEEAVRPQPPKRASKRSRRRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR046341SET_dom_sf
IPR001214SET_dom