mRNA_P-littoralis_Contig115.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.39.1
Unique NamemRNA_P-littoralis_Contig115.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Match: A0A6H5JC47_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC47_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 5.920e-117
Identity = 182/216 (84.26%), Postives = 195/216 (90.28%), Query Frame = 3 
Query:  648 ERLRDQLKKADPPSRDHLRRKSTQQQQPVQRAAITVHDVMETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDRKGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHSLTPNAKLQIGGGGERMKPWWYERAGGVEYGWWYECSIVARADIAVGAEVTIEYANPPEEAVRPQPPKRASKRSRRR 1295
            ++LRDQLKKA PP+RDHLRR STQQQ PVQR A+TVHDVME  LFSHDALKE+ S IH KGLGTKVAF EGDT+LTV+LPDV+VPAGY++KGGGYTCMG+IMH DGLGALVIDPSKTMRGTIPACRAFMEI LLRLLNHS  PNAKL I GGG RMKPWWYERAGGVEYGWWYECSIVA ADI VGAEVTIEYA+PP+ A RPQPPKRASKRSRRR
Sbjct:  294 DKLRDQLKKASPPARDHLRR-STQQQPPVQRPALTVHDVMEKDLFSHDALKEINSLIHCKGLGTKVAFAEGDTLLTVVLPDVDVPAGYEKKGGGYTCMGYIMHADGLGALVIDPSKTMRGTIPACRAFMEISLLRLLNHSFAPNAKLVIHGGGGRMKPWWYERAGGVEYGWWYECSIVACADIEVGAEVTIEYADPPKGAKRPQPPKRASKRSRRR 508
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BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.280e-28
Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 3 
Query:  747 ITVHDVMETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDRKGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHSLTPNAKLQIGGGGERMKPWWYERAGGVEYGWWYECSIVARADIAVGAEVTIEYANPPEE 1244
            IT  D      ++H+ +    S I G GL +K A   G  +   LLPD  V + +      Y+C  HIMH DG  AL IDP + MRG + AC A  +I LLRLLNHS +PN +L +G   +   P W+E  GG EYG WY CSI A  +I  G E+TI+YA  P E
Sbjct:  749 ITAADARGYYAWAHEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAF--ANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVG---DAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAE 909
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BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.870e-17
Identity = 69/186 (37.10%), Postives = 92/186 (49.46%), Query Frame = 3 
Query:  702 RRKSTQQQQPVQRAAI---TVHD-VMETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDRKGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHSLTPNAKLQIGGGGERMKPWWYE--RAG-GVEYGWWYECSIVARADIAVGAEVTIEYANPP 1238
            R K+ +  QP + AA+   ++HD V    L  H  ++E  S I G G   K    +G T+ T +LP  E    +  +   Y C  H+MH D  G + IDP    RG +  C   M   ++RLLNHS +PNA+L  GG      P WYE  RAG       WY CS+V R  +  G E+TI YA  P
Sbjct:   92 REKAQEPDQPKEMAALHFRSMHDEVPFVWLKEHFEVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQ--YDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGA---APPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFP 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JC47_9PHAE5.920e-11784.26SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFA9_9PHAE4.280e-2843.37SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JBG8_9PHAE1.870e-1737.10SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:106612..109371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1525
Hectar predicted targeting categoryother localisation
Exons6
Cds size1284
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.39.1prot_P-littoralis_Contig115.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 106629..109147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.4637086-UTR-P-littoralis_Contig115:106611..1066281680789469.4637086-UTR-P-littoralis_Contig115:106611..106628Pylaiella littoralis U1_48UTRP-littoralis_Contig115 106612..106628 +
1680789469.5595977-UTR-P-littoralis_Contig115:109147..1093711680789469.5595977-UTR-P-littoralis_Contig115:109147..109371Pylaiella littoralis U1_48UTRP-littoralis_Contig115 109148..109371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.4825764-CDS-P-littoralis_Contig115:106628..1069581680789469.4825764-CDS-P-littoralis_Contig115:106628..106958Pylaiella littoralis U1_48CDSP-littoralis_Contig115 106629..106958 +
1680789469.4936852-CDS-P-littoralis_Contig115:107224..1072751680789469.4936852-CDS-P-littoralis_Contig115:107224..107275Pylaiella littoralis U1_48CDSP-littoralis_Contig115 107225..107275 +
1680789469.5091984-CDS-P-littoralis_Contig115:107572..1076231680789469.5091984-CDS-P-littoralis_Contig115:107572..107623Pylaiella littoralis U1_48CDSP-littoralis_Contig115 107573..107623 +
1680789469.52087-CDS-P-littoralis_Contig115:107942..1080321680789469.52087-CDS-P-littoralis_Contig115:107942..108032Pylaiella littoralis U1_48CDSP-littoralis_Contig115 107943..108032 +
1680789469.5325453-CDS-P-littoralis_Contig115:108262..1084751680789469.5325453-CDS-P-littoralis_Contig115:108262..108475Pylaiella littoralis U1_48CDSP-littoralis_Contig115 108263..108475 +
1680789469.546769-CDS-P-littoralis_Contig115:108598..1091471680789469.546769-CDS-P-littoralis_Contig115:108598..109147Pylaiella littoralis U1_48CDSP-littoralis_Contig115 108599..109147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.39.1

>prot_P-littoralis_Contig115.39.1 ID=prot_P-littoralis_Contig115.39.1|Name=mRNA_P-littoralis_Contig115.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=428bp
MVWKDVLRVDGVLAWYLGLEESMIVERNELYLRDLLWKRVGLDADLIDFP
AAVRWPSPLWSSCLSALQLESPEGSYSSSRGAQSWQLQQGFLEQQVKEAH
RRDCAACRQRTKERKQARQQEKERVTQTKEREQARQQEKERVTQDEERVV
RAEKERKEDSEKLERERERAAAEKLEAERRVQQAEIKAAARAKAETQKLE
RRLARVQADRERLRDQLKKADPPSRDHLRRKSTQQQQPVQRAAITVHDVM
ETGLFSHDALKELASPIHGKGLGTKVAFVEGDTILTVLLPDVEVPAGYDR
KGGGYTCMGHIMHTDGLGALVIDPSKTMRGTIPACRAFMEIGLLRLLNHS
LTPNAKLQIGGGGERMKPWWYERAGGVEYGWWYECSIVARADIAVGAEVT
IEYANPPEEAVRPQPPKRASKRSRRRY*
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mRNA from alignment at P-littoralis_Contig115:106612..109371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.39.1 ID=mRNA_P-littoralis_Contig115.39.1|Name=mRNA_P-littoralis_Contig115.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2760bp|location=Sequence derived from alignment at P-littoralis_Contig115:106612..109371+ (Pylaiella littoralis U1_48)
GCAGTAGCCGGCCCACGATGGTGTGGAAAGACGTGTTGCGTGTCGATGGT
GTACTGGCATGGTACCTCGGTCTAGAGGAGAGCATGATAGTCGAAAGAAA
CGAGCTCTACCTGCGTGACCTACTTTGGAAGCGCGTGGGGCTTGACGCTG
ACCTCATCGATTTCCCTGCTGCGGTCAGGTGGCCGTCACCACTGTGGAGC
TCGTGCCTTTCTGCTCTCCAGTTAGAGTCACCGGAGGGCTCTTATTCCAG
CTCGCGTGGTGCACAATCATGGCAACTCCAACAGGGGTTTTTGGAACAAC
AAGTGAAGGAGGCCCACCGAAGAGACTGTGCGGCATGCAGACAGCGGGTG
AGTTGCGGCGAGATTCAGGAGTACGTACAGCTGTGCTTTCCTGAAAGCGC
TGTTGGGCATGTATGCTCGTGATGTTGGCTTATTTTTATATCCCTTGTGG
TAAACAGGTACTAGTACACAGGTGCTGTATCTGTCAGCATCTTTACCTCA
CTGCTGCATACACACATTATGTGAGCGTAGGTTGTCTATCCTCATGCTGC
GCGCACAGCACTGCAAAACGAGATGACATGTCCCCTTTGAATTATATTAT
GACCGCGACACAGACGAAGGAAAGGAAGCAGGCGCGGCAACAGGAGAAGG
AGAGAGTTACGCAGGTGACGTTGATGGGTAAATGGTAGAAACGGGGCGCC
TGTGTCTGTCATGTGTGCAGGTATTTAGTGCGTGTGCGTGTACGGTTCTA
TTTTAACATCGAGCCATCTTGCATGTTCCCGCCTCCTATTTTTCTCTCCC
TTGTGGTACACAGGTACTTGTACACAGGTGCTGTATCTGTCAGCATCTTT
GACTCACTGCTGTAAACACACATGATATGAGTAGGTTTGTCAATCCCCAC
GCTGCGCGCACAGCACTGTAAAACGAGAAGATGTTCCCTTTGAATTGTGA
CCGCGACACAGACGAAGGAAAGGGAGCAGGCGCGGCAACAGGAGAAGGAG
AGAGTTACGCAGGTGACGTTGATGGGTAAATGGTAGAAACGGGGCGCCTG
TGTCTGTCATGTGTGCAGGTATTTAGTGCGTGTGCGTGTACTGTTCTATT
TTAGCATCGAGCCCTGTTGTATGTTTCCGCTTCGTATGACAGCAGTAGTT
GTAGAACGCCGTCGCTACGCAGCTTTGTTTTAGTTCTGTGTTCGAATCGA
GAACATTGGCACCCGCGCTTTCCGCTAAACACAATAGAACCACTGCGGCT
TCGTTCTGTCTGAAGTTCTGCTCATTCCCGCGGCTGCCATTTGATCGCTA
CCGCATGCTGTACTTTCCGCATTTGTCACAGGATGAAGAGAGGGTTGTAC
GAGCAGAGAAGGAAAGAAAGGAGGACTCGGAGAAGCTTGAGCGCGAAAGG
GAGAGAGCAGCAGCAGAAAAGGCGAGAGAGACAAAGACGAGCTGCAGTGC
AAGCTTGCAACTGTGAGTTGCTGTTCTCACGATTGACATTTCCATTTTCT
GGTGGCGGGCGGCGGTTGATGCTGAGATCTCTCCCAAAAACACGTACTCA
GCAGGCTTACAGCAGTCAACACGCATCCACTCGCTGTTTTGATACATTTA
ACCTGCGCGTGTAAACGCCGAACACCGCCTTTGTGTCACGGGGATTTGCA
GCTCGAGGCCGAGAGACGAGTTCAGCAGGCGGAAATCAAGGCAGCGGCAC
GAGCGAAGGCAGAAACACAAAAGTTGGAGCGGCGATTGGCGAGAGTACAG
GCAGACAGAGAGAGGCTACGAGACCAGCTGAAGAAGGCCGACCCACCCTC
GCGTGACCACCTGCGGCGCAAGAGCACACAACAGCAACAGCCGGTACAGC
GGGCCGCTATAACGGTGAGTACATATAGTTTGTGCTTCGCAGGTTGTTGC
ACAAAATCAATGCCACCATACGGTTGCGCATGATCCAAACACAACGTGCT
ATCGTGTGCCGGCATGTTTCCCTCGCAAATCTCTCAGGTACACGACGTGA
TGGAAACAGGTCTCTTTTCGCACGACGCGCTCAAGGAACTCGCGAGCCCA
ATCCACGGCAAGGGTCTCGGCACTAAGGTCGCCTTTGTTGAAGGCGACAC
TATCTTGACGGTACTACTTCCAGATGTAGAGGTGCCTGCGGGGTATGATA
GGAAAGGTGGTGGCTATACTTGCATGGGTCATATCATGCACACGGATGGT
CTGGGAGCGCTCGTGATCGATCCGAGCAAAACCATGCGCGGTACGATCCC
CGCTTGTCGAGCGTTCATGGAAATCGGCTTGTTACGCCTTCTCAACCACT
CGCTCACGCCGAATGCCAAATTACAGATTGGAGGGGGTGGAGAACGAATG
AAGCCATGGTGGTACGAGAGGGCGGGAGGTGTGGAGTATGGATGGTGGTA
TGAATGCTCTATCGTAGCGCGTGCAGACATCGCGGTAGGAGCCGAGGTGA
CTATCGAATATGCTAACCCTCCCGAGGAGGCAGTGCGACCACAGCCACCG
AAAAGAGCAAGTAAGCGATCGAGACGCCGATATTAAGTGCCACCACACAA
TCAACCGTTGCTCGCTTCGGCTTGTGCCACTGCGCTTAGAGGGGGGCGTT
GGTCTGGTCTGAAATTATTGTATTAATCGCATCCGGGGGGCACCCTGTAA
AGGGGGAGGGAACAAGCCTACACTTGGCCTCGCTTGCTATCACGGAATAA
ATCAGGAACCTTCGCCACGGGGAGGCGCTTTCTGGACACAATCTGGGCTG
CACCCACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:106612..109371+

>mRNA_P-littoralis_Contig115.39.1 ID=mRNA_P-littoralis_Contig115.39.1|Name=mRNA_P-littoralis_Contig115.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1284bp|location=Sequence derived from alignment at P-littoralis_Contig115:106612..109371+ (Pylaiella littoralis U1_48)
ATGGTGTGGAAAGACGTGTTGCGTGTCGATGGTGTACTGGCATGGTACCT
CGGTCTAGAGGAGAGCATGATAGTCGAAAGAAACGAGCTCTACCTGCGTG
ACCTACTTTGGAAGCGCGTGGGGCTTGACGCTGACCTCATCGATTTCCCT
GCTGCGGTCAGGTGGCCGTCACCACTGTGGAGCTCGTGCCTTTCTGCTCT
CCAGTTAGAGTCACCGGAGGGCTCTTATTCCAGCTCGCGTGGTGCACAAT
CATGGCAACTCCAACAGGGGTTTTTGGAACAACAAGTGAAGGAGGCCCAC
CGAAGAGACTGTGCGGCATGCAGACAGCGGACGAAGGAAAGGAAGCAGGC
GCGGCAACAGGAGAAGGAGAGAGTTACGCAGACGAAGGAAAGGGAGCAGG
CGCGGCAACAGGAGAAGGAGAGAGTTACGCAGGATGAAGAGAGGGTTGTA
CGAGCAGAGAAGGAAAGAAAGGAGGACTCGGAGAAGCTTGAGCGCGAAAG
GGAGAGAGCAGCAGCAGAAAAGCTCGAGGCCGAGAGACGAGTTCAGCAGG
CGGAAATCAAGGCAGCGGCACGAGCGAAGGCAGAAACACAAAAGTTGGAG
CGGCGATTGGCGAGAGTACAGGCAGACAGAGAGAGGCTACGAGACCAGCT
GAAGAAGGCCGACCCACCCTCGCGTGACCACCTGCGGCGCAAGAGCACAC
AACAGCAACAGCCGGTACAGCGGGCCGCTATAACGGTACACGACGTGATG
GAAACAGGTCTCTTTTCGCACGACGCGCTCAAGGAACTCGCGAGCCCAAT
CCACGGCAAGGGTCTCGGCACTAAGGTCGCCTTTGTTGAAGGCGACACTA
TCTTGACGGTACTACTTCCAGATGTAGAGGTGCCTGCGGGGTATGATAGG
AAAGGTGGTGGCTATACTTGCATGGGTCATATCATGCACACGGATGGTCT
GGGAGCGCTCGTGATCGATCCGAGCAAAACCATGCGCGGTACGATCCCCG
CTTGTCGAGCGTTCATGGAAATCGGCTTGTTACGCCTTCTCAACCACTCG
CTCACGCCGAATGCCAAATTACAGATTGGAGGGGGTGGAGAACGAATGAA
GCCATGGTGGTACGAGAGGGCGGGAGGTGTGGAGTATGGATGGTGGTATG
AATGCTCTATCGTAGCGCGTGCAGACATCGCGGTAGGAGCCGAGGTGACT
ATCGAATATGCTAACCCTCCCGAGGAGGCAGTGCGACCACAGCCACCGAA
AAGAGCAAGTAAGCGATCGAGACGCCGATATTAA
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