mRNA_P-littoralis_Contig115.36.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI) HSP 1 Score: 291 bits (744), Expect = 3.590e-95 Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 3
Query: 342 MRGDLGLCRQIEQNNLVRGAVEGGEAIRQALLQPVEYREDGESTRVKESSAREALAPLIGGEREVETPSGFVDMHSDAMIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFEEVGVEEPALDLDD 803
MRGDLGLCRQIEQNNLVRG+VEGGEAIRQALLQPVEYREDGESTRVKESSAREALA LIGGEREVETPSGF+D SDA+IE+KYHNRWK GLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFE+VGVEEPALDLDD
Sbjct: 1 MRGDLGLCRQIEQNNLVRGSVEGGEAIRQALLQPVEYREDGESTRVKESSAREALASLIGGEREVETPSGFIDKPSDAVIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFEKVGVEEPALDLDD 154
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 231 bits (590), Expect = 1.150e-70 Identity = 135/270 (50.00%), Postives = 183/270 (67.78%), Query Frame = 3
Query: 330 LFRAMRGDLGLCRQIEQNNLVRGAVEGGEAIRQALLQPVEYREDGESTRVKESSAREALAPLIGGEREVETPSGFVDMHSDA-MIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFEEVGVEEPALDLDDMMPAPLLVITGLVLKTSGLYASALPRKRR-KVVYQSKQHDEPLWFEHASVEEKRAYASMKVRTSIALGEIDILKYYKEQLASVGRFNELDKDEFAERISGVQWRFTTAVGG 1133
++R M GDL L R IE+NNL +V+GGE I++AL++P+++ E S RV+E S R+ALA ++GG+ E ETP GF+D+ SD +IE+K++ WKHGLGQVL+YQ HYP L +RLHLFA IG K+TD+Y E AKS C + AVKVTFEEV VE+P ++L A + G + G+ + R Y+S+ EP W++H S+ EKRAYASM+ + SIA E ILK K++L S+G FN LD+DEFA+ I V+ RFT AV G
Sbjct: 2 MYRVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPIDHTEKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFAQIGCKNTDQYLEKAKSTCDSFAVKVTFEEV-VEDP-VELRSNR-ARVDNQRGQWEEGWGVDNRVTDKPERLSRAYRSEHGSEPFWWKHLSIGEKRAYASMRGKISIAQEEHGILKVSKKELESIGNFNNLDRDEFADGIRNVRRRFTAAVDG 268
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.920e-60 Identity = 128/246 (52.03%), Postives = 160/246 (65.04%), Query Frame = 3
Query: 429 ALLQPVEYREDGESTRVKESSAREALAPLIGGEREVETPSGFVDMHSDA-MIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFEEVGVEEPALDLDDMMPAPLLVITGLVLKT------------SGLYASALPRKRRKVVYQSKQHDEPLWFEHASVEEKRAYASMKVRTSIALGEIDILKYYKEQLASVGRFNELDKDEFAERISGVQWRFTTAV 1127
AL + VEY+ E +VKESS R+ALA ++GGE E ETP GF+D+ SD +IE+KY+ +W+ LGQVLAYQ++YP LA+R+HLFA G KDT+KY E KSVC HAVKVTFEE VE +LDLD + + G +KT S A RKR V + DEP WFEHASV+ KRAYASM+VR IA GEIDILK KE+L S+G F ELD+ EFA+ I +Q R ++V
Sbjct: 190 ALNRRVEYKP--ELFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFAQTGKKDTEKYVESTKSVCDTHAVKVTFEECVVEVQSLDLDK---DDINTVFGDEIKTQHRDKRARVKNDSDQLAGWGVRKRLAV-----EVDEPSWFEHASVDLKRAYASMEVRKMIAFGEIDILKSCKEELESIGCFGELDRHEFADGIRRIQRRHASSV 425
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 202 bits (514), Expect = 5.140e-54 Identity = 129/299 (43.14%), Postives = 175/299 (58.53%), Query Frame = 3
Query: 336 RAMRGDLGLCRQIEQNNLVRGAVEGGEAIRQALLQPVEYREDGESTRVKESSAREALAPLIGGEREVETPSGFVDMHSDA-MIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHA--------------------VKVTFEEVGVEEPALDLDDMMPAPLLVITGLVLKTSGLYASALPRKRRKVV------YQS--------KQHDE-PLWFEHASVEEKRAYASMKVRTSIALGEIDILKYYKEQLASVGRFNELDKDEFAERISGVQWRFTTA 1124
R M GDL LCRQIEQN L VEGGEAI+QALL+PV+Y+E+ + RV+E R+ALA L+GG EVETPSG++D+ S+ +IE+KY+ +WK GLGQVLAYQSHYPRLARRLHLFAH GD+DTDKY E+AK++ + + K+ F+ + ++ I ++ L A R R V YQS K+H P WFE+A+ ++K AY + +V+ S+ + EI++ + K L SVG+F DK EFA+RI Q R + A
Sbjct: 235 RVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCELAKAIAFKSSRKKSTAASKTMDSPEKNDAYAKIGFQRILEKQQQEANRKFRKQSADTIARVLGGDVSLCAEIEQRCARLQVTEEGRAYQSFMTGEAPPKKHTSLPEWFEYATNDQKSAYVTAEVKKSVVVTEIEMHEVCKVGLESVGQFAGRDKIEFADRIRDTQRRASRA 533
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.150e-39 Identity = 75/129 (58.14%), Postives = 98/129 (75.97%), Query Frame = 3
Query: 336 RAMRGDLGLCRQIEQNNLVRGAVEGGEAIRQALLQPVEYREDGESTRVKESSAREALAPLIGGEREVETPSGFVDMHSDA-MIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEM 719
R M GDL L ++IEQNNL +VEGG AI+QAL++P+EY+ +ST VKE R+ALA L+GGE EVETP+G +D+ S +IE+KY+ +WKHGLGQVLAY +P LA+RLHLFAH G+ T KYF++
Sbjct: 3 RVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYFDL 131
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.980e-33 Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 3
Query: 336 RAMRGDLGLCRQIEQNNLVRGAVEGGEAIRQALLQPVEYREDGESTRVKESSAREALAPLIGGEREVETPSGFVDMHSDA-MIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAH 683
R M GDL LCRQIEQN L V+GGEAI+QALL+PV+ ED + RV+E R+ALA ++GG EVETPSG++D+ S+ +IE+KY+ WK GLGQVL YQSHYPRL+RRLHLFAH
Sbjct: 669 RVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: A0A6H5JDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 3.340e-16 Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 3
Query: 495 REALAPLIGGEREVETPSGFVDMHSDA-MIEMKYHNRWKHGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVC 734
R A + G+ EVETP G +D+ S +IEMKY+ +WKH LGQVL Y YPRLA+RLHLFAH G+ T F++AK+VC
Sbjct: 235 RRKSAETVDGQTEVETPVGIIDVLSKTEVIEMKYNKKWKHALGQVLDYHLFYPRLAKRLHLFAHGGEAGTSMDFDLAKAVC 315
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K) HSP 1 Score: 88.2 bits (217), Expect = 2.120e-15 Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 7 KPSVLQKALRSIKINGAVKIDELLGEASSIDVIRLSCPEASGEYAAQMFTRVLEKD------------DRVTSIESRIKDI*INGCGRTTPVAD--------F*HPGGGFVDVAK*GHDSVSPQIDGDCSV 339
K +VLQ ALRSI ING+V+ID+ LG+AS ID RL CP AS YAAQMFTRVLEK+ T I R+ I ING G TPV+D + P G + + +++ + GD S+
Sbjct: 129 KTAVLQNALRSININGSVRIDDGLGKASIIDTTRLVCPGASSAYAAQMFTRVLEKERDDGGNSFMQDAQHPTPIADRVDYIRINGHGNVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETICRVLGGDISL 259
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: Q6XLT7_9PHYC (FirrV-1-L1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT7_9PHYC) HSP 1 Score: 81.3 bits (199), Expect = 2.540e-13 Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 4 TKPSVLQKALRSIKINGAVKIDELLGEASSIDVIRLSCPEASGEYAAQMFTRVLEKDDRVTSI------------------ESRIKDI*INGCGRTTPVAD 252
TK S++Q+ LRS+ I G++++DE+ G AS+IDVIRL CPE +G YAA +++E+D + T + R+K I ING G TTPVAD
Sbjct: 9 TKTSLIQQTLRSLNIQGSIRVDEVTGLASAIDVIRLICPEKNGWYAANTLQKIIEQDSQETVVPETTVSSPDHSAMIKPPLSERVKYITINGRGNTTPVAD 109
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Match: Q6XLT8_9PHYC (FirrV-1-K1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT8_9PHYC) HSP 1 Score: 78.2 bits (191), Expect = 3.110e-12 Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 4 TKPSVLQKALRSIKINGAVKIDELLGEASSIDVIRLSCPEASGEYAAQMFTRVLEKD---DRVTS----------------IESRIKDI*INGCGRTTPVAD 252
TK S++Q+ LRS+ I G++++DE+ G AS+IDVIRL CP+ + +YA+ + R++++D ++VT+ R+K I ING G TTPVAD
Sbjct: 9 TKSSLIQQTLRSLNIQGSIRVDEVTGLASAIDVIRLICPDQNEKYASHILKRIIDQDADKEKVTNTVTLSRSEHSATIKPPFSERVKSIKINGKGHTTPVAD 110 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig115.36.1 >prot_P-littoralis_Contig115.36.1 ID=prot_P-littoralis_Contig115.36.1|Name=mRNA_P-littoralis_Contig115.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=264bp MRGDLGLCRQIEQNNLVRGAVEGGEAIRQALLQPVEYREDGESTRVKESSback to top mRNA from alignment at P-littoralis_Contig115:102756..103888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig115.36.1 ID=mRNA_P-littoralis_Contig115.36.1|Name=mRNA_P-littoralis_Contig115.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1133bp|location=Sequence derived from alignment at P-littoralis_Contig115:102756..103888+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig115:102756..103888+ >mRNA_P-littoralis_Contig115.36.1 ID=mRNA_P-littoralis_Contig115.36.1|Name=mRNA_P-littoralis_Contig115.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig115:102756..103888+ (Pylaiella littoralis U1_48)back to top |