mRNA_P-littoralis_Contig115.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.30.1
Unique NamemRNA_P-littoralis_Contig115.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.30.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.030e-23
Identity = 70/142 (49.30%), Postives = 83/142 (58.45%), Query Frame = 1 
Query:  181 TNLDLLATAACSXXXXXXXXXXXXXXXXXGVHDHEVP------DVSQEFAAAQVTGTQSDEAVAAPASVQAVVKAVTPVHEPEHEQPLPAREALVKGNGAVQAAGEANAGEVTPMSYALVLVAQEPGEAQRLQTSRRSHNLL 588
            +NL+LLAT                       HD  VP      D+SQE A  QVTGTQ DEA+AAPAS Q VV+ VTP  + E +QPLPA EALV G   VQAAGEA AG+V P     V +AQ+ GEA R+Q SR SH++L
Sbjct:  516 SNLNLLATVCLLEENGSCGGIESGGGGDGANHDETVPIGDCAPDLSQELAVTQVTGTQPDEALAAPASAQVVVETVTPGQDTERQQPLPASEALVAGGVEVQAAGEAGAGDVMPTLSGSVGLAQQTGEAPRVQKSRGSHDVL 657
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BLAST of mRNA_P-littoralis_Contig115.30.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.850e-23
Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:  283 EVPDVSQEFAAAQVTGTQSDEAVAAP-ASVQAVVKAVTPVHEPEHEQPLPAREALVKGNGAVQAAGEANAGEVTPMSYALVLVAQEPGEAQRLQTSRRSHNLL 588
            + PD+SQE AA QVTGTQ DEAVAA  AS QAVV+  TP  + EHEQPLPA EALV G+  VQAAGEA A +V   S   V VAQ+ GEA R+Q SR SH+LL
Sbjct:   35 DAPDLSQELAATQVTGTQPDEAVAAASASPQAVVETATPGQDTEHEQPLPASEALVAGDVGVQAAGEAGAADVMLTSSGSVGVAQQTGEAPRVQESRGSHDLL 137
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BLAST of mRNA_P-littoralis_Contig115.30.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.700e-22
Identity = 72/143 (50.35%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:  181 TNLDLLATAACSXXXXXXXXXXXXXXXXXGVHDHEVP------DVSQEFAAAQVTGTQSDEAVAAP-ASVQAVVKAVTPVHEPEHEQPLPAREALVKGNGAVQAAGEANAGEVTPMSYALVLVAQEPGEAQRLQTSRRSHNLL 588
            +NL LLAT                       HD  VP      D SQE A  QVTGTQ DEAVAA  AS QAVV+  TPV + E EQPLP REALV G   VQ  GEA AG+V   S   V VAQ+ GEA R+Q SR SH+LL
Sbjct:  564 SNLQLLATVCVRAENESYGGIESGGGGDGANHDETVPIEDGAPDFSQELAVTQVTGTQPDEAVAAASASAQAVVETATPVQDTEREQPLPPREALVAGGVEVQVVGEAGAGDVMRTSSGSVGVAQQTGEAPRVQESRGSHDLL 706
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BLAST of mRNA_P-littoralis_Contig115.30.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.510e-17
Identity = 65/142 (45.77%), Postives = 75/142 (52.82%), Query Frame = 1 
Query:  181 TNLDLLATAACSXXXXXXXXXXXXXXXXXGVHDHEVP------DVSQEFAAAQVTGTQSDEAVAAPASVQAVVKAVTPVHEPEHEQPLPAREALVKGNGAVQAAGEANAGEVTPMSYALVLVAQEPGEAQRLQTSRRSHNLL 588
            +NL+LLAT                        D  VP      D+SQE AA +VT TQ DE VAAPAS Q          + E EQP PA +ALV G  AVQAAGEA A +V P S     VA +PGEAQR+Q SR SH+LL
Sbjct:    5 SNLNLLATVCLLEGNGSCGGIESGGGGDGANRDETVPIEDGALDLSQELAATRVTSTQPDEPVAAPASAQ----------DTECEQPSPASDALVAGGVAVQAAGEAGADDVMPTSRGSAGVAIQPGEAQRVQNSRGSHDLL 136
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BLAST of mRNA_P-littoralis_Contig115.30.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 9.420e-17
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  286 VPDVSQEFAAAQVTGTQSDEAVAAPASVQAVVKAVTPVHEPEHEQPLPAREALVKG 453
            VPD+SQE AA QVTGTQ DEAVAAPAS QAVVKAVTPV E EHEQP+PAREALVKG
Sbjct: 2003 VPDLSQELAATQVTGTQPDEAVAAPASAQAVVKAVTPVTETEHEQPVPAREALVKG 2058
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KUR8_9PHAE1.030e-2349.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA48_9PHAE2.850e-2363.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7R7_9PHAE5.700e-2250.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFH6_ECTSI3.510e-1745.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI9.420e-1785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:96395..97263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTT9
PFAMsBeta_helix,Chlam_PMP
Model size633
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.54e-17
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.2609856-CDS-P-littoralis_Contig115:96396..967411680789469.2609856-CDS-P-littoralis_Contig115:96396..96741Pylaiella littoralis U1_48CDSP-littoralis_Contig115 96397..96741 -
1680789469.2723212-CDS-P-littoralis_Contig115:96966..970851680789469.2723212-CDS-P-littoralis_Contig115:96966..97085Pylaiella littoralis U1_48CDSP-littoralis_Contig115 96967..97085 -
1680789469.2814329-CDS-P-littoralis_Contig115:97097..972631680789469.2814329-CDS-P-littoralis_Contig115:97097..97263Pylaiella littoralis U1_48CDSP-littoralis_Contig115 97098..97263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.30.1prot_P-littoralis_Contig115.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 96397..97263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.30.1

>prot_P-littoralis_Contig115.30.1 ID=prot_P-littoralis_Contig115.30.1|Name=mRNA_P-littoralis_Contig115.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp
PESAVNPAAVEAGEVGRGERASVTDTFRAPAVAVPPATAPAPPPVTPQGV
GGEGAGQAKATNLDLLATAACSAGAMASEGGSAGGSGSGGVHDHEVPDVS
QEFAAAQVTGTQSDEAVAAPASVQAVVKAVTPVHEPEHEQPLPAREALVK
GNGAVQAAGEANAGEVTPMSYALVLVAQEPGEAQRLQTSRRSHNLLGHAP
PATPSPAAAD
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mRNA from alignment at P-littoralis_Contig115:96395..97263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.30.1 ID=mRNA_P-littoralis_Contig115.30.1|Name=mRNA_P-littoralis_Contig115.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=869bp|location=Sequence derived from alignment at P-littoralis_Contig115:96395..97263- (Pylaiella littoralis U1_48)
CCAGAGTCGGCGGTCAACCCCGCAGCGGTTGAAGCGGGCGAGGTGGGGCG
AGGGGAACGTGCGTCGGTGACAGACACTTTTCGGGCGCCAGCAGTAGCTG
TGCCACCAGCAACAGCACCCGCACCACCACCAGTGACACCACAAGGCGTT
GGCGGAGAAGGCGCCGGCGGAGGGAGAGGACAGGCAAAGGCGACAAATCT
AGACCTCCTTGCGACCGCCGCCTGTTCGGCCGGAGCGATGGCAAGCGAGG
GTGGGAGTGCTGGTGGAAGCGGGAGCGGAGGTGTTCATGACCACGAGGTG
GGTGTTGGTGATTCCAAAGCGCACGTGTCTGAAACTTGAGTTGTGGAGGG
ATCGAGAGAGGTGGCGGGCGATGGAGCCAATCATAAAAAAAGAAGGGGGG
TTGTTACACCCTCCCGTGTTAGACACCACGGCAGGCACCGCAGCCAGACA
TGTACCAGGAAAATTTTAACGCCGATTGAAAACTGATACCCGCTCCACCC
CTTTGACCACTCGTTTCAATAGGTTCCGGACGTTTCGCAAGAGTTCGCGG
CCGCACAGGTGACTGGCACTCAGTCAGACGAGGCAGTGGCGGCGCCTGCA
TCTGTGCAGGCCGTGGTCAAGGCTGTAACACCCGTACACGAGCCGGAGCA
TGAGCAGCCTCTTCCGGCGAGAGAGGCCTTGGTGAAAGGTAACGGGGCGG
TGCAGGCAGCTGGAGAGGCCAATGCAGGCGAAGTGACGCCGATGTCTTAC
GCTTTGGTTTTGGTAGCACAAGAGCCGGGTGAAGCACAGCGACTACAGAC
AAGCCGCCGCTCGCACAACTTGCTCGGGCATGCACCACCAGCAACGCCAT
CACCAGCAGCGGCGGACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:96395..97263-

>mRNA_P-littoralis_Contig115.30.1 ID=mRNA_P-littoralis_Contig115.30.1|Name=mRNA_P-littoralis_Contig115.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig115:96395..97263- (Pylaiella littoralis U1_48)
CCAGAGTCGGCGGTCAACCCCGCAGCGGTTGAAGCGGGCGAGGTGGGGCG
AGGGGAACGTGCGTCGGTGACAGACACTTTTCGGGCGCCAGCAGTAGCTG
TGCCACCAGCAACAGCACCCGCACCACCACCAGTGACACCACAAGGCGTT
GGCGGAGAAGGCGCCGGACAGGCAAAGGCGACAAATCTAGACCTCCTTGC
GACCGCCGCCTGTTCGGCCGGAGCGATGGCAAGCGAGGGTGGGAGTGCTG
GTGGAAGCGGGAGCGGAGGTGTTCATGACCACGAGGTTCCGGACGTTTCG
CAAGAGTTCGCGGCCGCACAGGTGACTGGCACTCAGTCAGACGAGGCAGT
GGCGGCGCCTGCATCTGTGCAGGCCGTGGTCAAGGCTGTAACACCCGTAC
ACGAGCCGGAGCATGAGCAGCCTCTTCCGGCGAGAGAGGCCTTGGTGAAA
GGTAACGGGGCGGTGCAGGCAGCTGGAGAGGCCAATGCAGGCGAAGTGAC
GCCGATGTCTTACGCTTTGGTTTTGGTAGCACAAGAGCCGGGTGAAGCAC
AGCGACTACAGACAAGCCGCCGCTCGCACAACTTGCTCGGGCATGCACCA
CCAGCAACGCCATCACCAGCAGCGGCGGAC
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