mRNA_P-littoralis_Contig115.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.27.1
Unique NamemRNA_P-littoralis_Contig115.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.27.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.740e-13
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:   26 ENLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 214
            EN GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D+SLS L+GAG S+G  S
Sbjct:  159 ENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE2.740e-1360.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:92887..93126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size240
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.2000382-UTR-P-littoralis_Contig115:92886..929091680789469.2000382-UTR-P-littoralis_Contig115:92886..92909Pylaiella littoralis U1_48UTRP-littoralis_Contig115 92887..92909 -
1680789469.222754-UTR-P-littoralis_Contig115:93059..931261680789469.222754-UTR-P-littoralis_Contig115:93059..93126Pylaiella littoralis U1_48UTRP-littoralis_Contig115 93060..93126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.2127492-CDS-P-littoralis_Contig115:92909..930591680789469.2127492-CDS-P-littoralis_Contig115:92909..93059Pylaiella littoralis U1_48CDSP-littoralis_Contig115 92910..93059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.27.1prot_P-littoralis_Contig115.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 92910..93059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.27.1

>prot_P-littoralis_Contig115.27.1 ID=prot_P-littoralis_Contig115.27.1|Name=mRNA_P-littoralis_Contig115.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS*
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mRNA from alignment at P-littoralis_Contig115:92887..93126-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.27.1 ID=mRNA_P-littoralis_Contig115.27.1|Name=mRNA_P-littoralis_Contig115.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig115:92887..93126- (Pylaiella littoralis U1_48)
GGGTCGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCT
CGACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCG
GAAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACC
GATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTA
CCGGGGGTGATTCGTGAAGTAACTACCGAGGCAGGAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:92887..93126-

>mRNA_P-littoralis_Contig115.27.1 ID=mRNA_P-littoralis_Contig115.27.1|Name=mRNA_P-littoralis_Contig115.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig115:92887..93126- (Pylaiella littoralis U1_48)
ATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAGAATCTGTGGAGGA
GGGGAGGGAACACGACGATTTTCTATCCCGACCGATTGTAAGGGATTTGT
CGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGGGGGTGATTCGTGA
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