mRNA_P-littoralis_Contig115.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.24.1
Unique NamemRNA_P-littoralis_Contig115.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.930e-20
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:    5 RARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRPRAAPVVEGSASQESTPASAGQTIEVVNPY 208
            R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:  118 RGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.060e-18
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:    5 RARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRPRAAPVVEGSASQESTPASAGQTIEVVNPY 208
            R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:   53 RGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 8.590e-18
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:    5 RARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRPRAAPVVEGSASQESTPASAGQTIEVVNPY 208
            R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS  +P A PVV GSASQEST A AGQT  V NPY
Sbjct:  591 RGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5K731_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K731_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.900e-7
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:    5 RARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRPRAAPVV 139
            R RIMLP+++ ERSATMR  S +  +AV+FPRYIS  +P A PVV
Sbjct:   66 RGRIMLPVSDAERSATMRAPSRDPVSAVMFPRYISIDKPHADPVV 110
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.620e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:    5 RARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRP 121
            R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS  +P
Sbjct:   53 RGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:    5 RARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRP 121
            R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:  118 RGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156
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BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.120e-6
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:    2 YRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYGRPRAAPVVEGSASQESTP 169
            YRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  720 YRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KZP5_9PHAE8.930e-2066.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE2.060e-1863.24Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE8.590e-1866.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K731_9PHAE1.900e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE5.620e-764.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE1.330e-664.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE2.120e-648.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:91890..92106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size217
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.162602-UTR-P-littoralis_Contig115:91889..919051680789469.162602-UTR-P-littoralis_Contig115:91889..91905Pylaiella littoralis U1_48UTRP-littoralis_Contig115 91890..91905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.1731384-CDS-P-littoralis_Contig115:91905..921061680789469.1731384-CDS-P-littoralis_Contig115:91905..92106Pylaiella littoralis U1_48CDSP-littoralis_Contig115 91906..92106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.24.1prot_P-littoralis_Contig115.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 91906..92106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.24.1

>prot_P-littoralis_Contig115.24.1 ID=prot_P-littoralis_Contig115.24.1|Name=mRNA_P-littoralis_Contig115.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MLPITEGERSATMRPSSWNTPAAVLFPRYISYGRPRAAPVVEGSASQEST
PASAGQTIEVVNPYTR*
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mRNA from alignment at P-littoralis_Contig115:91890..92106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.24.1 ID=mRNA_P-littoralis_Contig115.24.1|Name=mRNA_P-littoralis_Contig115.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=217bp|location=Sequence derived from alignment at P-littoralis_Contig115:91890..92106+ (Pylaiella littoralis U1_48)
ATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTA
CCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCCGTTCTGTTCCCGCGG
TACATCAGCTACGGCAGACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGC
ATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCA
ACCCATACACTCGTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:91890..92106+

>mRNA_P-littoralis_Contig115.24.1 ID=mRNA_P-littoralis_Contig115.24.1|Name=mRNA_P-littoralis_Contig115.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig115:91890..92106+ (Pylaiella littoralis U1_48)
ATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTC
CTGGAACACTCCCGCAGCCGTTCTGTTCCCGCGGTACATCAGCTACGGCA
GACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACG
CCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCAACCCATACACTCGTTA
A
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