mRNA_P-littoralis_Contig115.22.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.700e-22 Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 88 LSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAG---VSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRC 396
LS+V+ VQ C GIS+Q V D + + GSA V+ SVVR A+R + GDDGL+ +RW A VRG+T G VSGVLGLV G DVLWSK+C +AS N G PRC
Sbjct: 22 LSKVACVQACLGISQQRVADDKALPEGSAGVFPSVVRAAERTLGGDDGLAPPERWEHARVRGVTTGRACVSGVLGLVEGSDVLWSKDCCGMASVNRGAGGSMVPRC 127
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.300e-14 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 67 KQDLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAG---VSGVLGLVGGRDV-----------LWSKNCAAVAS 357
+ DL +L+ V PC+G+S+QHV + M G+ADV+ S+VRQAQRN+E + L G+R W +A V GL +G VSGVLG VGG V W+K C VA+
Sbjct: 294 EDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVAT 406
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.780e-14 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 67 KQDLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAG---VSGVLGLVGGRDV-----------LWSKNCAAVAS 357
+ DL +L+ V PC+G+S+QHV + M G+ADV+ S+VRQAQRN+E + L G+R W +A V GL +G VSGVLG VGG V W+K C VA+
Sbjct: 199 EDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVAT 311
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 1.060e-13 Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 73 DLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGVSGVLGL--------------VGGRDVLWSKNCAAVAS 357
DL +L+ V PC+G+S+QHV + +M G+ADV+ S+VRQAQ N+E + L G+R W +A V GL +G SGV G+ VGG V W+K C VA+
Sbjct: 174 DLTELLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVAT 284
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.360e-7 Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 118 RGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAG---DRWGDACVRGLTAG----VSGVLGLVGGRDVLWSKNCAAVAS 357
RG+ R H+ + +D+ + + +VVRQA R +E + DRW A VRG+ AG VSGV+GLVG DVLWS+ C A+
Sbjct: 5 RGVCRSHMFEDKDVPLETVAAFGTVVRQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFAT 91
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 2.410e-5 Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 73 DLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGL 234
DL +L+ V PC+G+S+QHV + M G+ADV+ S+VRQAQRN+E + L
Sbjct: 188 DLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTL 241 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig115.22.1 >prot_P-littoralis_Contig115.22.1 ID=prot_P-littoralis_Contig115.22.1|Name=mRNA_P-littoralis_Contig115.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp MNWMKDNALSTAEGHICKKQDLALMLSEVSGVQPCRGISRQHVVDAEDMQback to top mRNA from alignment at P-littoralis_Contig115:91083..91698+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig115.22.1 ID=mRNA_P-littoralis_Contig115.22.1|Name=mRNA_P-littoralis_Contig115.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=616bp|location=Sequence derived from alignment at P-littoralis_Contig115:91083..91698+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig115:91083..91698+ >mRNA_P-littoralis_Contig115.22.1 ID=mRNA_P-littoralis_Contig115.22.1|Name=mRNA_P-littoralis_Contig115.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig115:91083..91698+ (Pylaiella littoralis U1_48)back to top |