mRNA_P-littoralis_Contig115.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.22.1
Unique NamemRNA_P-littoralis_Contig115.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.700e-22
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   88 LSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAG---VSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRC 396
            LS+V+ VQ C GIS+Q V D + +  GSA V+ SVVR A+R + GDDGL+  +RW  A VRG+T G   VSGVLGLV G DVLWSK+C  +AS N    G   PRC
Sbjct:   22 LSKVACVQACLGISQQRVADDKALPEGSAGVFPSVVRAAERTLGGDDGLAPPERWEHARVRGVTTGRACVSGVLGLVEGSDVLWSKDCCGMASVNRGAGGSMVPRC 127          
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.300e-14
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   67 KQDLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAG---VSGVLGLVGGRDV-----------LWSKNCAAVAS 357
            + DL  +L+ V    PC+G+S+QHV +   M  G+ADV+ S+VRQAQRN+E +  L  G+R  W +A V GL +G   VSGVLG VGG  V            W+K C  VA+
Sbjct:  294 EDDLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVAT 406          
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.780e-14
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   67 KQDLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAG---VSGVLGLVGGRDV-----------LWSKNCAAVAS 357
            + DL  +L+ V    PC+G+S+QHV +   M  G+ADV+ S+VRQAQRN+E +  L  G+R  W +A V GL +G   VSGVLG VGG  V            W+K C  VA+
Sbjct:  199 EDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVAT 311          
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-13
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   73 DLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAGDR--WGDACVRGLTAGVSGVLGL--------------VGGRDVLWSKNCAAVAS 357
            DL  +L+ V    PC+G+S+QHV +  +M  G+ADV+ S+VRQAQ N+E +  L  G+R  W +A V GL +G SGV G+              VGG  V W+K C  VA+
Sbjct:  174 DLTELLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVAT 284          
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-7
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  118 RGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGLSAG---DRWGDACVRGLTAG----VSGVLGLVGGRDVLWSKNCAAVAS 357
            RG+ R H+ + +D+   +   + +VVRQA R +E    +      DRW  A VRG+ AG    VSGV+GLVG  DVLWS+ C   A+
Sbjct:    5 RGVCRSHMFEDKDVPLETVAAFGTVVRQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFAT 91          
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.410e-5
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   73 DLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADVWHSVVRQAQRNIEGDDGL 234
            DL  +L+ V    PC+G+S+QHV +   M  G+ADV+ S+VRQAQRN+E +  L
Sbjct:  188 DLTELLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTL 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRH8_9PHAE2.700e-2254.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.300e-1443.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.780e-1443.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI1.060e-1341.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCN5_9PHAE1.360e-741.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE2.410e-548.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:91083..91698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.1157904-UTR-P-littoralis_Contig115:91082..910941680789469.1157904-UTR-P-littoralis_Contig115:91082..91094Pylaiella littoralis U1_48UTRP-littoralis_Contig115 91083..91094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.128586-CDS-P-littoralis_Contig115:91094..911661680789469.128586-CDS-P-littoralis_Contig115:91094..91166Pylaiella littoralis U1_48CDSP-littoralis_Contig115 91095..91166 +
1680789469.1372108-CDS-P-littoralis_Contig115:91383..916981680789469.1372108-CDS-P-littoralis_Contig115:91383..91698Pylaiella littoralis U1_48CDSP-littoralis_Contig115 91384..91698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.22.1prot_P-littoralis_Contig115.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 91095..91698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.22.1

>prot_P-littoralis_Contig115.22.1 ID=prot_P-littoralis_Contig115.22.1|Name=mRNA_P-littoralis_Contig115.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MNWMKDNALSTAEGHICKKQDLALMLSEVSGVQPCRGISRQHVVDAEDMQ
GGSADVWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAGVSGVLGLVG
GRDVLWSKNCAAVASGNARTAGGAGPRCA
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mRNA from alignment at P-littoralis_Contig115:91083..91698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.22.1 ID=mRNA_P-littoralis_Contig115.22.1|Name=mRNA_P-littoralis_Contig115.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=616bp|location=Sequence derived from alignment at P-littoralis_Contig115:91083..91698+ (Pylaiella littoralis U1_48)
GGCATCGATGTGATGAACTGGATGAAAGACAATGCCCTGTCAACGGCTGA GGGACACATCTGCAAAAAGCAAGACCTGGCACTGGTGAGGAAAATATTAG CAGTTTTGTTGGCAACACAGGGTGCTCGAGTGTCGTCCATGCCGCGCTTT TTCCTGGGTAGGCTCTTCGTGGTATGCGCATACATAGCTCCCGACGTCTT GAGGGGTCTGGGTCCAATATTGTGGCTGGACGTGATCTGCGACTGAGATA TACGCCGCCCAACATGTTGCGTTTGGCGTTTGGTCTGTTTTGTTCTCGCA GATGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGTATCTCGAGGC AGCACGTTGTGGACGCCGAAGACATGCAGGGGGGTTCTGCGGATGTTTGG CACAGTGTAGTGCGCCAGGCTCAGCGCAATATCGAGGGCGATGACGGGTT ATCGGCGGGCGATCGCTGGGGTGACGCTTGCGTCAGGGGTTTGACGGCCG GTGTTTCTGGGGTCCTCGGCTTGGTCGGGGGGCGAGATGTGTTGTGGTCG AAGAACTGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGCTGGGGGAGC GGGGCCGAGGTGTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:91083..91698+

>mRNA_P-littoralis_Contig115.22.1 ID=mRNA_P-littoralis_Contig115.22.1|Name=mRNA_P-littoralis_Contig115.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig115:91083..91698+ (Pylaiella littoralis U1_48)
ATGAACTGGATGAAAGACAATGCCCTGTCAACGGCTGAGGGACACATCTG
CAAAAAGCAAGACCTGGCACTGATGCTTAGCGAAGTTTCTGGTGTCCAGC
CTTGTCGTGGTATCTCGAGGCAGCACGTTGTGGACGCCGAAGACATGCAG
GGGGGTTCTGCGGATGTTTGGCACAGTGTAGTGCGCCAGGCTCAGCGCAA
TATCGAGGGCGATGACGGGTTATCGGCGGGCGATCGCTGGGGTGACGCTT
GCGTCAGGGGTTTGACGGCCGGTGTTTCTGGGGTCCTCGGCTTGGTCGGG
GGGCGAGATGTGTTGTGGTCGAAGAACTGTGCTGCTGTGGCGAGTGGAAA
CGCTCGCACTGCTGGGGGAGCGGGGCCGAGGTGTGCG
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