mRNA_P-littoralis_Contig115.19.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.19.3
Unique NamemRNA_P-littoralis_Contig115.19.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.19.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:89878..91079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size585
Hectar predicted targeting categoryother localisation
Exons4
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789469.0452945-CDS-P-littoralis_Contig115:89877..899611680789469.0452945-CDS-P-littoralis_Contig115:89877..89961Pylaiella littoralis U1_48CDSP-littoralis_Contig115 89878..89961 +
1680789469.0541987-CDS-P-littoralis_Contig115:90153..904081680789469.0541987-CDS-P-littoralis_Contig115:90153..90408Pylaiella littoralis U1_48CDSP-littoralis_Contig115 90154..90408 +
1680789469.0625398-CDS-P-littoralis_Contig115:90645..908341680789469.0625398-CDS-P-littoralis_Contig115:90645..90834Pylaiella littoralis U1_48CDSP-littoralis_Contig115 90646..90834 +
1680789469.076489-CDS-P-littoralis_Contig115:91022..910791680789469.076489-CDS-P-littoralis_Contig115:91022..91079Pylaiella littoralis U1_48CDSP-littoralis_Contig115 91023..91079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.19.3prot_P-littoralis_Contig115.19.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 89878..91079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.19.3

>prot_P-littoralis_Contig115.19.3 ID=prot_P-littoralis_Contig115.19.3|Name=mRNA_P-littoralis_Contig115.19.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
GGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFGFLCWDEPNS
LTSMLPVCLWLKHHKRSGKVKTGTSAQAFVWVREWLATSEYAGIVGFDTT
PYSIGHIFVRLLKHKNYFCLDVAGMQKKAKVYSIQSCEWGDTYIDLFKSL
PLQWSAMRLPDTSMVFSRDDQGAIVKVTVEKPDLGGRGSVKSITL
back to top

mRNA from alignment at P-littoralis_Contig115:89878..91079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.19.3 ID=mRNA_P-littoralis_Contig115.19.3|Name=mRNA_P-littoralis_Contig115.19.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1202bp|location=Sequence derived from alignment at P-littoralis_Contig115:89878..91079+ (Pylaiella littoralis U1_48)
GGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGC
ATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACC
ATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATG
TTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCG
CGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCGTA
CCTCTGTGTCGTCGTTTGTGATATAGGTGTGGACGCCCGCGTCCATCGCC
ACCTTAGAGTTTGGCTTCCTCTGTTGGGATGAACCCAACAGCCTGACGAG
CATGTTGCCTGTGTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGG
TCAAGACAGGAACCTCCGCCCAAGCGTTCGTATGGGTGCGTGAATGGCTA
GCCACCTCGGAGTATGCCGGAATAGTGGGATTCGACACGACGCCCTACTC
GATTGGACACATATTCGTCCGCCTTCTGAAGGTACGGGATAATTGTGTCG
TAGACGGTTGGCCCGAGTGGGTCTACGTGCATCTGATTTTTTATTTGGAA
AGACAGCTGTGATCACAAGTGTATCGCACCCTAAACCGAAGCTTCGCGAC
TGTTGGATCGATCTTTGAGTACGAGAGCTTTCCATTTGATGTCTTATATT
TCTACCTGCGCACCCCTCCGCCCGTTCCCCTGTGTTCTCCTCGGCTACCG
TTGTACTTCACCCGAAAGCACAAGAACTACTTCTGTCTGGACGTGGCTGG
TATGCAGAAGAAAGCGAAGGTGTATTCCATCCAGTCGTGCGAGTGGGGCG
ATACGTACATCGACCTCTTCAAGTCGTTGCCCTTGCAATGGTCCGCGATG
AGGCTACCGGATACGTCGATGGTCTTCTCCAGAGATGACCAAGGAGCAAT
CGTGAAGGTCAGGGTCGCCTCAATCTTGCGTGTCAGTGGTCGACGATTGT
GTTTGTCCCCGTCGGCGCCTAATATTGAAGTGCCGAAGTATGTAGAGGAT
AATATACTGTATGCTTGAATCGATTTTCGGGCAGGGGCCCGTATTGATTA
TTGTTTTGCGCTTTCCGGTGTTTCCGATGCTGCGGTATGGTCCAGGTCAC
CGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAATCCATAACGT
TG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig115:89878..91079+

>mRNA_P-littoralis_Contig115.19.3 ID=mRNA_P-littoralis_Contig115.19.3|Name=mRNA_P-littoralis_Contig115.19.3|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig115:89878..91079+ (Pylaiella littoralis U1_48)
GGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGC
ATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTGTGGACGCCCGCGT
CCATCGCCACCTTAGAGTTTGGCTTCCTCTGTTGGGATGAACCCAACAGC
CTGACGAGCATGTTGCCTGTGTGCCTCTGGCTCAAGCACCACAAGCGGTC
AGGCAAGGTCAAGACAGGAACCTCCGCCCAAGCGTTCGTATGGGTGCGTG
AATGGCTAGCCACCTCGGAGTATGCCGGAATAGTGGGATTCGACACGACG
CCCTACTCGATTGGACACATATTCGTCCGCCTTCTGAAGCACAAGAACTA
CTTCTGTCTGGACGTGGCTGGTATGCAGAAGAAAGCGAAGGTGTATTCCA
TCCAGTCGTGCGAGTGGGGCGATACGTACATCGACCTCTTCAAGTCGTTG
CCCTTGCAATGGTCCGCGATGAGGCTACCGGATACGTCGATGGTCTTCTC
CAGAGATGACCAAGGAGCAATCGTGAAGGTCACCGTCGAGAAGCCGGACC
TAGGCGGTCGCGGGTCAGTCAAATCCATAACGTTG
back to top